2026-02-15T04:25:59.475972Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314) 2026-02-15T04:25:59.475983Z 00O  on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586 2026-02-15T04:25:59.476002Z 00O Resolving secrets 2026-02-15T04:25:59.476108Z 00O section_start:1771129559:prepare_executor 2026-02-15T04:25:59.476109Z 00O+Preparing the "docker+machine" executor 2026-02-15T04:25:59.602862Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-02-15T04:26:03.765182Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-02-15T04:26:03.765762Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-02-15T04:26:03.765772Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-02-15T04:26:31.434817Z 00O Using docker image sha256:8c79d964faeee45e329d6365dabcd1983cd15a93ff3fb807cb69cec3a944d96f for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:5ed0b6888446d55b932458648141f8a7489cf217c0d545d248c18405dd4dd118 ... 2026-02-15T04:26:31.434895Z 00O section_end:1771129591:prepare_executor 2026-02-15T04:26:31.434897Z 00O+section_start:1771129591:prepare_script 2026-02-15T04:26:31.434968Z 00O+Preparing environment 2026-02-15T04:26:31.435692Z 00O Using effective pull policy of [always] for container sha256:c87f9ca763404f6648165425f16774a933ec337b539742eb65d514f6c887dcfb 2026-02-15T04:26:41.241548Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1771129405-d80e83cb... 2026-02-15T04:26:41.397244Z 00O section_end:1771129601:prepare_script 2026-02-15T04:26:41.397253Z 00O+section_start:1771129601:get_sources 2026-02-15T04:26:41.397753Z 00O+Getting source from Git repository 2026-02-15T04:26:41.752754Z 01O Gitaly correlation ID: d21a312de03241248a89a814f4cc38da 2026-02-15T04:26:41.758422Z 01O Fetching changes... 2026-02-15T04:26:41.761647Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-02-15T04:26:41.764017Z 01O Created fresh repository. 2026-02-15T04:26:47.305281Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)... 2026-02-15T04:26:47.493927Z 01O 2026-02-15T04:26:47.493933Z 01O Skipping Git submodules setup 2026-02-15T04:26:47.493934Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-02-15T04:26:47.723368Z 00O section_end:1771129607:get_sources 2026-02-15T04:26:47.723373Z 00O+section_start:1771129607:download_artifacts 2026-02-15T04:26:47.724072Z 00O+Downloading artifacts 2026-02-15T04:26:48.099320Z 01O Downloading artifacts for mirror-packages (13120362981)... 2026-02-15T04:26:49.035065Z 01E Downloading artifacts from coordinator... ok  correlation_id=d8592465d5d641f2beedf92acb415def host=storage.googleapis.com id=13120362981 responseStatus=200 OK token=6c_489jyv 2026-02-15T04:26:49.246513Z 01O Downloading artifacts for build (13120362982)... 2026-02-15T04:26:49.602583Z 01E Downloading artifacts from coordinator... ok  correlation_id=d1b61aea61124e7c99592e36a0640fcd host=storage.googleapis.com id=13120362982 responseStatus=200 OK token=6c_489jyv 2026-02-15T04:26:50.312361Z 00O section_end:1771129610:download_artifacts 2026-02-15T04:26:50.312369Z 00O+section_start:1771129610:step_script 2026-02-15T04:26:50.312782Z 00O+Executing "step_script" stage of the job script 2026-02-15T04:26:50.312805Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-02-15T04:26:50.313692Z 00O Using docker image sha256:8c79d964faeee45e329d6365dabcd1983cd15a93ff3fb807cb69cec3a944d96f for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:5ed0b6888446d55b932458648141f8a7489cf217c0d545d248c18405dd4dd118 ... 2026-02-15T04:26:50.659928Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-02-15T04:26:50.669513Z 01O $ mkdir -p ~/.R 2026-02-15T04:26:50.670884Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-02-15T04:26:50.859749Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-02-15T04:26:50.859759Z 01E 2026-02-15T04:27:27.126242Z 01E Updating HTML index of packages in '.Library' 2026-02-15T04:27:27.127026Z 01E Making 'packages.html' ... done 2026-02-15T04:27:27.141247Z 01E Warning message: 2026-02-15T04:27:27.141248Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-02-15T04:27:27.149103Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-02-15T04:27:27.308528Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-02-15T04:27:27.308694Z 01O * using R version 3.5.0 (2018-04-23) 2026-02-15T04:27:27.309016Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-02-15T04:27:27.309255Z 01O * using session charset: UTF-8 2026-02-15T04:27:27.884266Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-02-15T04:27:27.884581Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-02-15T04:27:27.887116Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-02-15T04:27:27.887339Z 01O * package encoding: UTF-8 2026-02-15T04:27:27.887630Z 01O * checking package namespace information ... OK 2026-02-15T04:27:27.893387Z 01O * checking package dependencies ... NOTE 2026-02-15T04:27:33.426051Z 01O Package suggested but not available for checking: ‘xts’ 2026-02-15T04:27:33.426055Z 01O 2026-02-15T04:27:33.426056Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-02-15T04:27:33.426063Z 01O * checking if this is a source package ... OK 2026-02-15T04:27:33.429648Z 01O * checking if there is a namespace ... OK 2026-02-15T04:27:33.439411Z 01O * checking for executable files ... OK 2026-02-15T04:27:34.428704Z 01O * checking for hidden files and directories ... OK 2026-02-15T04:27:34.432658Z 01O * checking for portable file names ... OK 2026-02-15T04:27:34.440529Z 01O * checking for sufficient/correct file permissions ... OK 2026-02-15T04:27:34.442834Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-02-15T04:27:52.605944Z 01O * checking installed package size ... NOTE 2026-02-15T04:27:52.613642Z 01O installed size is 8.6Mb 2026-02-15T04:27:52.614465Z 01O sub-directories of 1Mb or more: 2026-02-15T04:27:52.615021Z 01O doc 1.1Mb 2026-02-15T04:27:52.615022Z 01O libs 2.3Mb 2026-02-15T04:27:52.615023Z 01O po 1.7Mb 2026-02-15T04:27:52.615023Z 01O tests 2.2Mb 2026-02-15T04:27:52.615331Z 01O * checking package directory ... OK 2026-02-15T04:27:52.615862Z 01O * checking DESCRIPTION meta-information ... OK 2026-02-15T04:27:52.811209Z 01O * checking top-level files ... OK 2026-02-15T04:27:52.811718Z 01O * checking for left-over files ... OK 2026-02-15T04:27:52.814401Z 01O * checking index information ... OK 2026-02-15T04:27:52.975274Z 01O * checking package subdirectories ... OK 2026-02-15T04:27:53.173798Z 01O * checking R files for non-ASCII characters ... OK 2026-02-15T04:27:53.223183Z 01O * checking R files for syntax errors ... OK 2026-02-15T04:27:53.320320Z 01O * checking whether the package can be loaded ... OK 2026-02-15T04:27:53.492161Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-02-15T04:27:53.629072Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-02-15T04:27:53.772219Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-02-15T04:27:53.914776Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-02-15T04:27:54.085509Z 01O * checking loading without being on the library search path ... OK 2026-02-15T04:27:54.254018Z 01O * checking dependencies in R code ... OK 2026-02-15T04:27:54.872690Z 01O * checking S3 generic/method consistency ... OK 2026-02-15T04:27:55.480302Z 01O * checking replacement functions ... OK 2026-02-15T04:27:55.656932Z 01O * checking foreign function calls ... OK 2026-02-15T04:27:56.285210Z 01O * checking R code for possible problems ... OK 2026-02-15T04:28:04.630345Z 01O * checking Rd files ... OK 2026-02-15T04:28:04.968045Z 01O * checking Rd metadata ... OK 2026-02-15T04:28:05.013322Z 01O * checking Rd cross-references ... OK 2026-02-15T04:28:05.244831Z 01O * checking for missing documentation entries ... OK 2026-02-15T04:28:05.449584Z 01O * checking for code/documentation mismatches ... OK 2026-02-15T04:28:06.363243Z 01O * checking Rd \usage sections ... OK 2026-02-15T04:28:07.391025Z 01O * checking Rd contents ... OK 2026-02-15T04:28:07.710321Z 01O * checking for unstated dependencies in examples ... OK 2026-02-15T04:28:08.204975Z 01O * checking line endings in shell scripts ... OK 2026-02-15T04:28:08.205761Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-02-15T04:28:08.214550Z 01O * checking line endings in Makefiles ... OK 2026-02-15T04:28:08.215181Z 01O * checking compilation flags in Makevars ... OK 2026-02-15T04:28:08.275112Z 01O * checking for GNU extensions in Makefiles ... OK 2026-02-15T04:28:08.276163Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-02-15T04:28:08.279125Z 01O * checking compiled code ... OK 2026-02-15T04:28:08.341713Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-02-15T04:28:08.417753Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-02-15T04:28:08.418147Z 01O * checking examples ... OK 2026-02-15T04:28:11.653094Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-02-15T04:28:11.712901Z 01O * checking tests ... 2026-02-15T04:28:11.834064Z 01E Running ‘autoprint.R’ 2026-02-15T04:28:12.068581Z 01O 18,21d17 2026-02-15T04:28:12.068583Z 01O < a 2026-02-15T04:28:12.068583Z 01O < 2026-02-15T04:28:12.068584Z 01O < 1: 1 2026-02-15T04:28:12.068584Z 01O < 2: 3 2026-02-15T04:28:12.068585Z 01O 28,31d23 2026-02-15T04:28:12.068585Z 01O < a 2026-02-15T04:28:12.068586Z 01O < 2026-02-15T04:28:12.068586Z 01O < 1: 1 2026-02-15T04:28:12.068587Z 01O < 2: 3 2026-02-15T04:28:12.068587Z 01O 33,37d24 2026-02-15T04:28:12.068588Z 01O < Index: 2026-02-15T04:28:12.068588Z 01O < a 2026-02-15T04:28:12.068589Z 01O < 2026-02-15T04:28:12.068589Z 01O < 1: 1 2026-02-15T04:28:12.068589Z 01O < 2: 3 2026-02-15T04:28:12.068590Z 01O 39,43d25 2026-02-15T04:28:12.068590Z 01O < Index: 2026-02-15T04:28:12.068591Z 01O < a 2026-02-15T04:28:12.068591Z 01O < 2026-02-15T04:28:12.068591Z 01O < 1: 1 2026-02-15T04:28:12.068592Z 01O < 2: 3 2026-02-15T04:28:12.068592Z 01O 61,64d42 2026-02-15T04:28:12.068593Z 01O < a 2026-02-15T04:28:12.068593Z 01O < 2026-02-15T04:28:12.068594Z 01O < 1: 1 2026-02-15T04:28:12.068594Z 01O < 2: 5 2026-02-15T04:28:12.068594Z 01O 66,69d43 2026-02-15T04:28:12.068595Z 01O < a 2026-02-15T04:28:12.068595Z 01O < 2026-02-15T04:28:12.068596Z 01O < 1: 1 2026-02-15T04:28:12.068596Z 01O < 2: 6 2026-02-15T04:28:12.068596Z 01O 73,76d46 2026-02-15T04:28:12.068597Z 01O < a 2026-02-15T04:28:12.068597Z 01O < 2026-02-15T04:28:12.068598Z 01O < 1: 1 2026-02-15T04:28:12.068598Z 01O < 2: 5 2026-02-15T04:28:12.068598Z 01O 143,145d112 2026-02-15T04:28:12.068599Z 01O < a 2026-02-15T04:28:12.068599Z 01O < 2026-02-15T04:28:12.068600Z 01O < 1: 9 2026-02-15T04:28:12.068600Z 01O 151,154d117 2026-02-15T04:28:12.068600Z 01O < a 2026-02-15T04:28:12.068601Z 01O < 2026-02-15T04:28:12.068601Z 01O < 1: 10 2026-02-15T04:28:12.068602Z 01O < 2: 10 2026-02-15T04:28:12.068602Z 01O 156,159d118 2026-02-15T04:28:12.068602Z 01O < a 2026-02-15T04:28:12.068603Z 01O < 2026-02-15T04:28:12.068603Z 01O < 1: 10 2026-02-15T04:28:12.068604Z 01O < 2: 10 2026-02-15T04:28:12.068604Z 01O 161,164d119 2026-02-15T04:28:12.068604Z 01O < a 2026-02-15T04:28:12.068605Z 01O < 2026-02-15T04:28:12.068605Z 01O < 1: 10 2026-02-15T04:28:12.068606Z 01O < 2: 10 2026-02-15T04:28:12.068606Z 01O 210,212d164 2026-02-15T04:28:12.068640Z 01O < x y 2026-02-15T04:28:12.068641Z 01O < 2026-02-15T04:28:12.068641Z 01O < 1: 1 1 2026-02-15T04:28:12.062219Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-02-15T04:37:27.271842Z 01E Running ‘litedown.R’ 2026-02-15T04:37:27.559341Z 01E Running ‘main.R’ 2026-02-15T04:38:05.843157Z 01E Running ‘mergelist.R’ 2026-02-15T04:38:07.144732Z 01E Running ‘nafill.R’ 2026-02-15T04:38:07.572791Z 01E Running ‘optimize.R’ 2026-02-15T04:38:08.710512Z 01E Running ‘other.R’ 2026-02-15T04:38:08.895656Z 01E Running ‘programming.R’ 2026-02-15T04:38:09.384608Z 01E Running ‘S4.R’ 2026-02-15T04:38:09.651671Z 01E Running ‘types.R’ 2026-02-15T04:38:09.858999Z 01O ERROR 2026-02-15T04:38:09.860301Z 01O Running the tests in ‘tests/main.R’ failed. 2026-02-15T04:38:09.860398Z 01O Complete output: 2026-02-15T04:38:09.860661Z 01O > Sys.setenv(OMP_THREAD_LIMIT = Sys.getenv("OMP_THREAD_LIMIT", "2")) 2026-02-15T04:38:09.860662Z 01O > require(data.table) 2026-02-15T04:38:09.860662Z 01O Loading required package: data.table 2026-02-15T04:38:09.860663Z 01O > 2026-02-15T04:38:09.860663Z 01O > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw 2026-02-15T04:38:09.860664Z 01O getDTthreads(verbose=TRUE): 2026-02-15T04:38:09.860665Z 01O OpenMP version (_OPENMP) 201307 2026-02-15T04:38:09.860665Z 01O omp_get_num_procs() 4 2026-02-15T04:38:09.860666Z 01O R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) 2026-02-15T04:38:09.860667Z 01O R_DATATABLE_NUM_THREADS unset 2026-02-15T04:38:09.860667Z 01O R_DATATABLE_THROTTLE unset (default 1024) 2026-02-15T04:38:09.860668Z 01O omp_get_thread_limit() 2147483647 2026-02-15T04:38:09.860668Z 01O omp_get_max_threads() 4 2026-02-15T04:38:09.860669Z 01O OMP_THREAD_LIMIT 2 2026-02-15T04:38:09.860669Z 01O OMP_NUM_THREADS unset 2026-02-15T04:38:09.860670Z 01O RestoreAfterFork true 2026-02-15T04:38:09.860670Z 01O data.table is using 2 threads with throttle==1024. See ?setDTthreads. 2026-02-15T04:38:09.860671Z 01O test.data.table() running: /builds/Rdatatable/data.table/data.table.Rcheck/data.table/tests/tests.Rraw 2026-02-15T04:38:09.860671Z 01O 2026-02-15T04:38:09.860672Z 01O **** Full long double accuracy is not available. Tests using this will be skipped. 2026-02-15T04:38:09.860672Z 01O 2026-02-15T04:38:09.860673Z 01O Test 2365.2 ran without errors but failed check that x equals y: 2026-02-15T04:38:09.860673Z 01O > x = dcast(df_dcast, a ~ b, value.var = "v") 2026-02-15T04:38:09.860674Z 01O a 1 2 [Key=a Types=int,int,int Classes=fac,int,int] 2026-02-15T04:38:09.860674Z 01O 1: x 3 NA 2026-02-15T04:38:09.860675Z 01O 2: y NA 4 2026-02-15T04:38:09.860676Z 01O > y = dcast(dt_dcast, a ~ b, value.var = "v") 2026-02-15T04:38:09.860676Z 01O a 1 2 [Key=a Types=cha,int,int Classes=cha,int,int] 2026-02-15T04:38:09.860677Z 01O 1: x 3 NA 2026-02-15T04:38:09.860677Z 01O 2: y NA 4 2026-02-15T04:38:09.860678Z 01O Datasets have different column modes. First 3: a(numeric!=character) 2026-02-15T04:38:09.860678Z 01O 2026-02-15T04:38:09.860679Z 01O Sun Feb 15 04:38:05 2026 endian==little, sizeof(long double)==16, capabilities('long.double')==TRUE, longdouble.digits==NULL, sizeof(pointer)==8, TZ=='UTC', Sys.timezone()=='UTC', Sys.getlocale()=='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()=='OpenMP version (_OPENMP)==201307; omp_get_num_procs()==4; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2147483647; omp_get_max_threads()==4; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/builds/Rdatatable/data.table/data.table.Rcheck','/usr/local/lib/R/library', zlibVersion()==1.2.8 ZLIB_VERSION==1.2.8 2026-02-15T04:38:09.860716Z 01O Error in test.data.table() : 2026-02-15T04:38:09.860716Z 01O 1 error out of 12645. Search tests/tests.Rraw for test number 2365.2. Duration: 38.1s elapsed (40.7s cpu). 2026-02-15T04:38:09.860717Z 01O Calls: test.data.table -> stopf -> raise_condition -> signal 2026-02-15T04:38:09.860718Z 01O Execution halted 2026-02-15T04:38:09.861054Z 01O * DONE 2026-02-15T04:38:09.861855Z 01E 2026-02-15T04:38:09.861978Z 01O Status: 1 ERROR, 2 NOTEs 2026-02-15T04:38:09.862209Z 01E See 2026-02-15T04:38:09.862209Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-02-15T04:38:09.862210Z 01E for details. 2026-02-15T04:38:09.862211Z 01E 2026-02-15T04:38:10.044851Z 00O section_end:1771130290:step_script 2026-02-15T04:38:10.044859Z 00O+section_start:1771130290:after_script 2026-02-15T04:38:10.045267Z 00O+Running after_script 2026-02-15T04:38:10.389981Z 01O Running after script... 2026-02-15T04:38:10.390007Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-02-15T04:38:10.391073Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-02-15T04:38:10.391133Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-02-15T04:38:10.391257Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-02-15T04:38:10.391390Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-02-15T04:38:10.550104Z 00O section_end:1771130290:after_script 2026-02-15T04:38:10.550111Z 00O+section_start:1771130290:upload_artifacts_on_failure 2026-02-15T04:38:10.550894Z 00O+Uploading artifacts for failed job 2026-02-15T04:38:10.931287Z 01O Uploading artifacts... 2026-02-15T04:38:10.995876Z 01E bus/test-lin-ancient-cran: found 693 matching artifact files and directories 2026-02-15T04:38:13.320271Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=71476ecf252f43d1b266eb65495879e9 id=13120362993 responseStatus=201 Created token=6c_489jyv 2026-02-15T04:38:13.491573Z 00O section_end:1771130293:upload_artifacts_on_failure 2026-02-15T04:38:13.491580Z 00O+section_start:1771130293:cleanup_file_variables 2026-02-15T04:38:13.491661Z 00O+Cleaning up project directory and file based variables 2026-02-15T04:38:13.987893Z 00O section_end:1771130293:cleanup_file_variables 2026-02-15T04:38:13.987900Z 00O+ 2026-02-15T04:38:14.012139Z 00O ERROR: Job failed: exit code 1