2026-07-31T04:21:49.274383Z 00O Running with gitlab-runner 19.2.0~pre.1355.g471b878c (471b878c) 2026-07-31T04:21:49.274394Z 00O  on green-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default XC_pLo7y6, system ID: s_e492edf4e5ae 2026-07-31T04:21:49.274400Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true 2026-07-31T04:21:49.274423Z 00O Resolving secrets 2026-07-31T04:21:49.274573Z 00O section_start:1785471709:prepare_executor  2026-07-31T04:21:49.274577Z 00O+Preparing the "docker+machine" executor 2026-07-31T04:21:49.402203Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-07-31T04:21:53.060879Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-07-31T04:21:53.061338Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-07-31T04:21:53.061344Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-07-31T04:22:32.131431Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-07-31T04:22:32.131514Z 00O section_end:1785471752:prepare_executor  2026-07-31T04:22:32.131602Z 00O+section_start:1785471752:prepare_script  2026-07-31T04:22:32.131606Z 00O+Preparing environment 2026-07-31T04:22:32.132354Z 00O Using effective pull policy of [always] for container sha256:974de0bfd61b8c7b0b50b53bfe1f54e358e6a6a4f1417386e7b31bce55c05eec 2026-07-31T04:22:42.121469Z 01O Running on runner-xcplo7y6-project-3622566-concurrent-0 via runner-xcplo7y6-s-l-m-amd64-1785471261-b23e710c... 2026-07-31T04:22:42.279721Z 00O section_end:1785471762:prepare_script  2026-07-31T04:22:42.280254Z 00O+section_start:1785471762:get_sources  2026-07-31T04:22:42.280260Z 00O+Getting source from Git repository 2026-07-31T04:22:42.612304Z 01O Gitaly correlation ID: 9d4f4fb996fa4111822ac390191e7290 2026-07-31T04:22:42.618241Z 01O Fetching changes... 2026-07-31T04:22:42.621262Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-07-31T04:22:42.623310Z 01O Created fresh repository. 2026-07-31T04:22:48.522287Z 01O Checking out 7bc8bc13 as detached HEAD (ref is master)... 2026-07-31T04:22:48.706597Z 01O 2026-07-31T04:22:48.706600Z 01O Skipping Git submodules setup 2026-07-31T04:22:48.706665Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-07-31T04:22:48.908466Z 00O section_end:1785471768:get_sources  2026-07-31T04:22:48.909166Z 00O+section_start:1785471768:download_artifacts  2026-07-31T04:22:48.909172Z 00O+Downloading artifacts 2026-07-31T04:22:49.253522Z 01O Downloading artifacts for mirror-packages (15637875528)... 2026-07-31T04:22:49.490314Z 01E Direct download from storage.googleapis.com  correlation_id=44a2b6c2bf8341568e54e753646d1829 id=15637875528 status=302 token=71_qe6sx- 2026-07-31T04:22:50.034443Z 01E Downloading artifacts from coordinator... ok  correlation_id=44a2b6c2bf8341568e54e753646d1829 id=15637875528 status=302 token=71_qe6sx- 2026-07-31T04:22:50.651649Z 01O Downloading artifacts for build (15637875529)... 2026-07-31T04:22:50.837838Z 01E Direct download from storage.googleapis.com  correlation_id=eaead198280847129df93edf3f408b76 id=15637875529 status=302 token=71_qe6sx- 2026-07-31T04:22:51.032898Z 01E Downloading artifacts from coordinator... ok  correlation_id=eaead198280847129df93edf3f408b76 id=15637875529 status=302 token=71_qe6sx- 2026-07-31T04:22:51.660348Z 00O section_end:1785471771:download_artifacts  2026-07-31T04:22:51.660752Z 00O+section_start:1785471771:step_script  2026-07-31T04:22:51.660759Z 00O+Executing "step_script" stage of the job script 2026-07-31T04:22:51.660771Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-07-31T04:22:51.661593Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-07-31T04:22:51.981479Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-07-31T04:22:51.990671Z 01O $ mkdir -p ~/.R 2026-07-31T04:22:51.991833Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-07-31T04:22:52.168659Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-07-31T04:22:52.168668Z 01E 2026-07-31T04:23:30.633538Z 01E Updating HTML index of packages in '.Library' 2026-07-31T04:23:30.634037Z 01E Making 'packages.html' ... done 2026-07-31T04:23:30.644073Z 01E Warning message: 2026-07-31T04:23:30.644073Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-07-31T04:23:30.650998Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-07-31T04:23:30.797455Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-07-31T04:23:30.797584Z 01O * using R version 3.5.0 (2018-04-23) 2026-07-31T04:23:30.797894Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-07-31T04:23:30.798094Z 01O * using session charset: UTF-8 2026-07-31T04:23:31.338861Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-07-31T04:23:31.339123Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-07-31T04:23:31.341587Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-07-31T04:23:31.341728Z 01O * package encoding: UTF-8 2026-07-31T04:23:31.341997Z 01O * checking package namespace information ... OK 2026-07-31T04:23:31.347637Z 01O * checking package dependencies ... NOTE 2026-07-31T04:23:35.323912Z 01O Package suggested but not available for checking: ‘xts’ 2026-07-31T04:23:35.323915Z 01O 2026-07-31T04:23:35.323916Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-07-31T04:23:35.323969Z 01O * checking if this is a source package ... OK 2026-07-31T04:23:35.327581Z 01O * checking if there is a namespace ... OK 2026-07-31T04:23:35.332430Z 01O * checking for executable files ... OK 2026-07-31T04:23:36.120839Z 01O * checking for hidden files and directories ... OK 2026-07-31T04:23:36.124140Z 01O * checking for portable file names ... OK 2026-07-31T04:23:36.130620Z 01O * checking for sufficient/correct file permissions ... OK 2026-07-31T04:23:36.132474Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-07-31T04:23:56.264581Z 01O * checking installed package size ... NOTE 2026-07-31T04:23:56.268147Z 01O installed size is 9.0Mb 2026-07-31T04:23:56.268864Z 01O sub-directories of 1Mb or more: 2026-07-31T04:23:56.269288Z 01O doc 1.1Mb 2026-07-31T04:23:56.269289Z 01O libs 2.6Mb 2026-07-31T04:23:56.269289Z 01O po 1.7Mb 2026-07-31T04:23:56.269290Z 01O tests 2.2Mb 2026-07-31T04:23:56.269517Z 01O * checking package directory ... OK 2026-07-31T04:23:56.269846Z 01O * checking DESCRIPTION meta-information ... OK 2026-07-31T04:23:56.441665Z 01O * checking top-level files ... OK 2026-07-31T04:23:56.442008Z 01O * checking for left-over files ... OK 2026-07-31T04:23:56.444769Z 01O * checking index information ... OK 2026-07-31T04:23:56.602035Z 01O * checking package subdirectories ... OK 2026-07-31T04:23:56.793724Z 01O * checking R files for non-ASCII characters ... OK 2026-07-31T04:23:56.841746Z 01O * checking R files for syntax errors ... OK 2026-07-31T04:23:56.939194Z 01O * checking whether the package can be loaded ... OK 2026-07-31T04:23:57.106890Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-07-31T04:23:57.239938Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-07-31T04:23:57.373315Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-07-31T04:23:57.509800Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-07-31T04:23:57.683207Z 01O * checking loading without being on the library search path ... OK 2026-07-31T04:23:57.847893Z 01O * checking dependencies in R code ... OK 2026-07-31T04:23:58.434411Z 01O * checking S3 generic/method consistency ... OK 2026-07-31T04:23:58.986062Z 01O * checking replacement functions ... OK 2026-07-31T04:23:59.143034Z 01O * checking foreign function calls ... OK 2026-07-31T04:23:59.736806Z 01O * checking R code for possible problems ... OK 2026-07-31T04:24:08.055015Z 01O * checking Rd files ... OK 2026-07-31T04:24:08.375047Z 01O * checking Rd metadata ... OK 2026-07-31T04:24:08.415515Z 01O * checking Rd cross-references ... OK 2026-07-31T04:24:08.614849Z 01O * checking for missing documentation entries ... OK 2026-07-31T04:24:08.809318Z 01O * checking for code/documentation mismatches ... OK 2026-07-31T04:24:09.644001Z 01O * checking Rd \usage sections ... OK 2026-07-31T04:24:10.595687Z 01O * checking Rd contents ... OK 2026-07-31T04:24:10.873021Z 01O * checking for unstated dependencies in examples ... OK 2026-07-31T04:24:11.296171Z 01O * checking line endings in shell scripts ... OK 2026-07-31T04:24:11.296751Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-07-31T04:24:11.304441Z 01O * checking line endings in Makefiles ... OK 2026-07-31T04:24:11.304934Z 01O * checking compilation flags in Makevars ... OK 2026-07-31T04:24:11.358878Z 01O * checking for GNU extensions in Makefiles ... OK 2026-07-31T04:24:11.359607Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-07-31T04:24:11.362336Z 01O * checking compiled code ... NOTE 2026-07-31T04:24:11.416990Z 01O File ‘data.table/libs/data.table.so’: 2026-07-31T04:24:11.416992Z 01O Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’ 2026-07-31T04:24:11.417445Z 01O 2026-07-31T04:24:11.417446Z 01O Compiled code should not call non-API entry points in R. 2026-07-31T04:24:11.417447Z 01O 2026-07-31T04:24:11.417447Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. 2026-07-31T04:24:11.417883Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-07-31T04:24:11.488128Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-07-31T04:24:11.488508Z 01O * checking examples ... OK 2026-07-31T04:24:14.669861Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-07-31T04:24:14.727244Z 01O * checking tests ... 2026-07-31T04:24:14.854856Z 01E Running ‘autoprint.R’ 2026-07-31T04:24:15.077223Z 01O 18,21d17 2026-07-31T04:24:15.077263Z 01O < a 2026-07-31T04:24:15.077263Z 01O < 2026-07-31T04:24:15.077264Z 01O < 1: 1 2026-07-31T04:24:15.077264Z 01O < 2: 3 2026-07-31T04:24:15.077265Z 01O 28,31d23 2026-07-31T04:24:15.077265Z 01O < a 2026-07-31T04:24:15.077266Z 01O < 2026-07-31T04:24:15.077266Z 01O < 1: 1 2026-07-31T04:24:15.077267Z 01O < 2: 3 2026-07-31T04:24:15.077267Z 01O 33,37d24 2026-07-31T04:24:15.077267Z 01O < Index: 2026-07-31T04:24:15.077268Z 01O < a 2026-07-31T04:24:15.077268Z 01O < 2026-07-31T04:24:15.077268Z 01O < 1: 1 2026-07-31T04:24:15.077269Z 01O < 2: 3 2026-07-31T04:24:15.077269Z 01O 39,43d25 2026-07-31T04:24:15.077269Z 01O < Index: 2026-07-31T04:24:15.077270Z 01O < a 2026-07-31T04:24:15.077270Z 01O < 2026-07-31T04:24:15.077270Z 01O < 1: 1 2026-07-31T04:24:15.077271Z 01O < 2: 3 2026-07-31T04:24:15.077271Z 01O 61,64d42 2026-07-31T04:24:15.077271Z 01O < a 2026-07-31T04:24:15.077271Z 01O < 2026-07-31T04:24:15.077272Z 01O < 1: 1 2026-07-31T04:24:15.077272Z 01O < 2: 5 2026-07-31T04:24:15.077272Z 01O 66,69d43 2026-07-31T04:24:15.077273Z 01O < a 2026-07-31T04:24:15.077273Z 01O < 2026-07-31T04:24:15.077273Z 01O < 1: 1 2026-07-31T04:24:15.077274Z 01O < 2: 6 2026-07-31T04:24:15.077274Z 01O 73,76d46 2026-07-31T04:24:15.077274Z 01O < a 2026-07-31T04:24:15.077275Z 01O < 2026-07-31T04:24:15.077275Z 01O < 1: 1 2026-07-31T04:24:15.077275Z 01O < 2: 5 2026-07-31T04:24:15.077276Z 01O 143,145d112 2026-07-31T04:24:15.077276Z 01O < a 2026-07-31T04:24:15.077276Z 01O < 2026-07-31T04:24:15.077277Z 01O < 1: 9 2026-07-31T04:24:15.077277Z 01O 151,154d117 2026-07-31T04:24:15.077277Z 01O < a 2026-07-31T04:24:15.077278Z 01O < 2026-07-31T04:24:15.077278Z 01O < 1: 10 2026-07-31T04:24:15.077278Z 01O < 2: 10 2026-07-31T04:24:15.077279Z 01O 156,159d118 2026-07-31T04:24:15.077279Z 01O < a 2026-07-31T04:24:15.077279Z 01O < 2026-07-31T04:24:15.077280Z 01O < 1: 10 2026-07-31T04:24:15.077280Z 01O < 2: 10 2026-07-31T04:24:15.077280Z 01O 161,164d119 2026-07-31T04:24:15.077281Z 01O < a 2026-07-31T04:24:15.077281Z 01O < 2026-07-31T04:24:15.077281Z 01O < 1: 10 2026-07-31T04:24:15.077282Z 01O < 2: 10 2026-07-31T04:24:15.077282Z 01O 210,212d164 2026-07-31T04:24:15.077282Z 01O < x y 2026-07-31T04:24:15.077283Z 01O < 2026-07-31T04:24:15.077283Z 01O < 1: 1 1 2026-07-31T04:24:15.072182Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-07-31T04:32:55.739274Z 01E Running ‘litedown.R’ 2026-07-31T04:32:56.004103Z 01E Running ‘main.R’ 2026-07-31T04:33:31.719681Z 01E Running ‘mergelist.R’ 2026-07-31T04:33:32.876780Z 01E Running ‘nafill.R’ 2026-07-31T04:33:33.281190Z 01E Running ‘optimize.R’ 2026-07-31T04:33:34.362589Z 01E Running ‘other.R’ 2026-07-31T04:33:34.540098Z 01E Running ‘programming.R’ 2026-07-31T04:33:35.001956Z 01E Running ‘S4.R’ 2026-07-31T04:33:35.267885Z 01E Running ‘types.R’ 2026-07-31T04:33:35.475923Z 01O OK 2026-07-31T04:33:35.476837Z 01O * DONE 2026-07-31T04:33:35.477543Z 01E 2026-07-31T04:33:35.477648Z 01O Status: 3 NOTEs 2026-07-31T04:33:35.477811Z 01E See 2026-07-31T04:33:35.477812Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-07-31T04:33:35.477813Z 01E for details. 2026-07-31T04:33:35.477813Z 01E 2026-07-31T04:33:35.478038Z 01E 2026-07-31T04:33:35.647472Z 00O section_end:1785472415:step_script  2026-07-31T04:33:35.647867Z 00O+section_start:1785472415:after_script  2026-07-31T04:33:35.647873Z 00O+Running after_script 2026-07-31T04:33:35.959829Z 01O Running after script... 2026-07-31T04:33:35.959852Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-07-31T04:33:35.961089Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-07-31T04:33:35.961198Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-07-31T04:33:35.961270Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-07-31T04:33:35.961393Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-07-31T04:33:36.113078Z 00O section_end:1785472416:after_script  2026-07-31T04:33:36.113753Z 00O+section_start:1785472416:upload_artifacts_on_success  2026-07-31T04:33:36.113759Z 00O+Uploading artifacts for successful job 2026-07-31T04:33:36.469590Z 01O Uploading artifacts... 2026-07-31T04:33:36.522804Z 01E bus/test-lin-ancient-cran: found 696 matching artifact files and directories 2026-07-31T04:33:38.899722Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=4b33f004993c455f836dac258d42bb21 id=15637875535 status=201 token=71_qe6sx- 2026-07-31T04:33:39.062589Z 00O section_end:1785472419:upload_artifacts_on_success  2026-07-31T04:33:39.062693Z 00O+section_start:1785472419:cleanup_file_variables  2026-07-31T04:33:39.062699Z 00O+Cleaning up project directory and file based variables 2026-07-31T04:33:39.534894Z 00O section_end:1785472419:cleanup_file_variables  2026-07-31T04:33:39.556203Z 00O Job succeeded