2026-09-15T04:20:22.820542Z 00O Running with gitlab-runner 19.4.0~pre.1956.g7b010e09 (7b010e09) 2026-09-15T04:20:22.820570Z 00O  on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_ZEw2l13bj0Ae 2026-09-15T04:20:22.820574Z 00O  UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58 2026-09-15T04:20:22.820583Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true 2026-09-15T04:20:22.820609Z 00O Resolving secrets 2026-09-15T04:20:22.820775Z 00O section_start:1789446022:prepare_executor  2026-09-15T04:20:22.820778Z 00O+Preparing the "docker+machine" executor 2026-09-15T04:20:22.970251Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-09-15T04:20:22.970285Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 ) 2026-09-15T04:20:22.970294Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 2026-09-15T04:20:22.971006Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-09-15T04:20:22.971012Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 ... 2026-09-15T04:20:24.058779Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ... 2026-09-15T04:20:25.506135Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 ) 2026-09-15T04:20:25.506150Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 2026-09-15T04:20:25.507257Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ... 2026-09-15T04:20:25.507268Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-09-15T04:20:25.507989Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-09-15T04:20:25.508009Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-09-15T04:20:50.070390Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-09-15T04:20:50.070493Z 00O section_end:1789446050:prepare_executor  2026-09-15T04:20:50.070634Z 00O+section_start:1789446050:prepare_script  2026-09-15T04:20:50.070640Z 00O+Preparing environment 2026-09-15T04:20:50.070680Z 00O Using helper image: registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 ) 2026-09-15T04:20:50.070693Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 2026-09-15T04:20:50.071672Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ... 2026-09-15T04:20:50.071682Z 00O Using effective pull policy of [always] for container sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef 2026-09-15T04:21:01.331731Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1789445955-94d5e730... 2026-09-15T04:21:01.462865Z 00O section_end:1789446061:prepare_script  2026-09-15T04:21:01.463527Z 00O+section_start:1789446061:get_sources  2026-09-15T04:21:01.463534Z 00O+Getting source from Git repository 2026-09-15T04:21:01.707026Z 01O Gitaly correlation ID: c40e85f6e03e4ff0879f1d6aac40fe10 2026-09-15T04:21:01.709857Z 01O Fetching changes... 2026-09-15T04:21:01.712253Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-09-15T04:21:01.713748Z 01O Created fresh repository. 2026-09-15T04:21:05.674897Z 01O Checking out a3eeb4c0 as detached HEAD (ref is master)... 2026-09-15T04:21:05.807998Z 01O 2026-09-15T04:21:05.808007Z 01O Skipping Git submodules setup 2026-09-15T04:21:05.808009Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-09-15T04:21:06.018652Z 00O section_end:1789446066:get_sources  2026-09-15T04:21:06.019637Z 00O+section_start:1789446066:download_artifacts  2026-09-15T04:21:06.019646Z 00O+Downloading artifacts 2026-09-15T04:21:06.338131Z 01O Downloading artifacts for mirror-packages (16501040599)... 2026-09-15T04:21:06.520809Z 01E Direct download from storage.googleapis.com  correlation_id=92513a90ed6848598b00075fe6b4424b id=16501040599 status=302 token=73_gKsXsr 2026-09-15T04:21:07.294199Z 01E Downloading artifacts from coordinator... ok  correlation_id=92513a90ed6848598b00075fe6b4424b id=16501040599 status=302 token=73_gKsXsr 2026-09-15T04:21:07.733526Z 01O Downloading artifacts for build (16501040600)... 2026-09-15T04:21:07.907554Z 01E Direct download from storage.googleapis.com  correlation_id=44b58b58114d499b81abaddc5d0b1e44 id=16501040600 status=302 token=73_gKsXsr 2026-09-15T04:21:08.082745Z 01E Downloading artifacts from coordinator... ok  correlation_id=44b58b58114d499b81abaddc5d0b1e44 id=16501040600 status=302 token=73_gKsXsr 2026-09-15T04:21:08.692680Z 00O section_end:1789446068:download_artifacts  2026-09-15T04:21:08.693156Z 00O+section_start:1789446068:step_script  2026-09-15T04:21:08.693166Z 00O+Executing "step_script" stage of the job script 2026-09-15T04:21:08.693178Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-09-15T04:21:08.694235Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-09-15T04:21:08.921696Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-09-15T04:21:08.925891Z 01O $ mkdir -p ~/.R 2026-09-15T04:21:08.926395Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-09-15T04:21:09.037609Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-09-15T04:21:09.037618Z 01E 2026-09-15T04:21:34.212344Z 01E Updating HTML index of packages in '.Library' 2026-09-15T04:21:34.212446Z 01E Making 'packages.html' ... done 2026-09-15T04:21:34.218570Z 01E Warning message: 2026-09-15T04:21:34.218570Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-09-15T04:21:34.221561Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-09-15T04:21:34.315464Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-09-15T04:21:34.315514Z 01O * using R version 3.5.0 (2018-04-23) 2026-09-15T04:21:34.315523Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-09-15T04:21:34.315579Z 01O * using session charset: UTF-8 2026-09-15T04:21:34.655127Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-09-15T04:21:34.655163Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-09-15T04:21:34.656707Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-09-15T04:21:34.656816Z 01O * package encoding: UTF-8 2026-09-15T04:21:34.656918Z 01O * checking package namespace information ... OK 2026-09-15T04:21:34.660338Z 01O * checking package dependencies ... NOTE 2026-09-15T04:21:38.355048Z 01O Package suggested but not available for checking: ‘xts’ 2026-09-15T04:21:38.355051Z 01O 2026-09-15T04:21:38.355052Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-09-15T04:21:38.355053Z 01O * checking if this is a source package ... OK 2026-09-15T04:21:38.357050Z 01O * checking if there is a namespace ... OK 2026-09-15T04:21:38.360014Z 01O * checking for executable files ... OK 2026-09-15T04:21:38.873704Z 01O * checking for hidden files and directories ... OK 2026-09-15T04:21:38.875316Z 01O * checking for portable file names ... OK 2026-09-15T04:21:38.879059Z 01O * checking for sufficient/correct file permissions ... OK 2026-09-15T04:21:38.880021Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-09-15T04:21:52.178205Z 01O * checking installed package size ... NOTE 2026-09-15T04:21:52.179889Z 01O installed size is 9.0Mb 2026-09-15T04:21:52.180279Z 01O sub-directories of 1Mb or more: 2026-09-15T04:21:52.180654Z 01O doc 1.1Mb 2026-09-15T04:21:52.180661Z 01O libs 2.6Mb 2026-09-15T04:21:52.180662Z 01O po 1.7Mb 2026-09-15T04:21:52.180663Z 01O tests 2.2Mb 2026-09-15T04:21:52.180706Z 01O * checking package directory ... OK 2026-09-15T04:21:52.265418Z 01E Warning in c.person(person("Tyson", "Barrett", role = c("aut", "cre"), email = "t.barrett88@gmail.com", : 2026-09-15T04:21:52.265428Z 01E method is only applicable to ‘person’ objects 2026-09-15T04:21:52.180834Z 01O * checking DESCRIPTION meta-information ... OK 2026-09-15T04:21:52.286747Z 01O * checking top-level files ... OK 2026-09-15T04:21:52.286903Z 01O * checking for left-over files ... OK 2026-09-15T04:21:52.288448Z 01O * checking index information ... OK 2026-09-15T04:21:52.371779Z 01O * checking package subdirectories ... OK 2026-09-15T04:21:52.486186Z 01O * checking R files for non-ASCII characters ... OK 2026-09-15T04:21:52.515054Z 01O * checking R files for syntax errors ... OK 2026-09-15T04:21:52.570432Z 01O * checking whether the package can be loaded ... OK 2026-09-15T04:21:52.677632Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-09-15T04:21:52.766205Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-09-15T04:21:52.852896Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-09-15T04:21:52.939565Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-09-15T04:21:53.052307Z 01O * checking loading without being on the library search path ... OK 2026-09-15T04:21:53.160752Z 01O * checking dependencies in R code ... OK 2026-09-15T04:21:53.550616Z 01O * checking S3 generic/method consistency ... OK 2026-09-15T04:21:54.065503Z 01O * checking replacement functions ... OK 2026-09-15T04:21:54.180911Z 01O * checking foreign function calls ... OK 2026-09-15T04:21:54.586689Z 01O * checking R code for possible problems ... OK 2026-09-15T04:21:59.599956Z 01O * checking Rd files ... OK 2026-09-15T04:21:59.789223Z 01O * checking Rd metadata ... OK 2026-09-15T04:21:59.814371Z 01O * checking Rd cross-references ... OK 2026-09-15T04:21:59.954695Z 01O * checking for missing documentation entries ... OK 2026-09-15T04:22:00.079705Z 01O * checking for code/documentation mismatches ... OK 2026-09-15T04:22:00.711790Z 01O * checking Rd \usage sections ... OK 2026-09-15T04:22:01.503275Z 01O * checking Rd contents ... OK 2026-09-15T04:22:01.698864Z 01O * checking for unstated dependencies in examples ... OK 2026-09-15T04:22:01.992073Z 01O * checking line endings in shell scripts ... OK 2026-09-15T04:22:01.992408Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-09-15T04:22:01.996760Z 01O * checking line endings in Makefiles ... OK 2026-09-15T04:22:01.996933Z 01O * checking compilation flags in Makevars ... OK 2026-09-15T04:22:02.029154Z 01O * checking for GNU extensions in Makefiles ... OK 2026-09-15T04:22:02.029496Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-09-15T04:22:02.030961Z 01O * checking compiled code ... NOTE 2026-09-15T04:22:02.064295Z 01O File ‘data.table/libs/data.table.so’: 2026-09-15T04:22:02.064297Z 01O Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’ 2026-09-15T04:22:02.064587Z 01O 2026-09-15T04:22:02.064590Z 01O Compiled code should not call non-API entry points in R. 2026-09-15T04:22:02.064591Z 01O 2026-09-15T04:22:02.064592Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. 2026-09-15T04:22:02.064788Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-09-15T04:22:02.111299Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-09-15T04:22:02.111405Z 01O * checking examples ... OK 2026-09-15T04:22:04.707671Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-09-15T04:22:04.741532Z 01O * checking tests ... 2026-09-15T04:22:04.821955Z 01E Running ‘autoprint.R’ 2026-09-15T04:22:04.961127Z 01O 18,21d17 2026-09-15T04:22:04.961132Z 01O < a 2026-09-15T04:22:04.961133Z 01O < 2026-09-15T04:22:04.961133Z 01O < 1: 1 2026-09-15T04:22:04.961134Z 01O < 2: 3 2026-09-15T04:22:04.961135Z 01O 28,31d23 2026-09-15T04:22:04.961135Z 01O < a 2026-09-15T04:22:04.961136Z 01O < 2026-09-15T04:22:04.961136Z 01O < 1: 1 2026-09-15T04:22:04.961136Z 01O < 2: 3 2026-09-15T04:22:04.961137Z 01O 33,37d24 2026-09-15T04:22:04.961137Z 01O < Index: 2026-09-15T04:22:04.961138Z 01O < a 2026-09-15T04:22:04.961138Z 01O < 2026-09-15T04:22:04.961138Z 01O < 1: 1 2026-09-15T04:22:04.961138Z 01O < 2: 3 2026-09-15T04:22:04.961139Z 01O 39,43d25 2026-09-15T04:22:04.961139Z 01O < Index: 2026-09-15T04:22:04.961139Z 01O < a 2026-09-15T04:22:04.961140Z 01O < 2026-09-15T04:22:04.961140Z 01O < 1: 1 2026-09-15T04:22:04.961140Z 01O < 2: 3 2026-09-15T04:22:04.961140Z 01O 61,64d42 2026-09-15T04:22:04.961141Z 01O < a 2026-09-15T04:22:04.961141Z 01O < 2026-09-15T04:22:04.961141Z 01O < 1: 1 2026-09-15T04:22:04.961142Z 01O < 2: 5 2026-09-15T04:22:04.961142Z 01O 66,69d43 2026-09-15T04:22:04.961142Z 01O < a 2026-09-15T04:22:04.961142Z 01O < 2026-09-15T04:22:04.961143Z 01O < 1: 1 2026-09-15T04:22:04.961143Z 01O < 2: 6 2026-09-15T04:22:04.961143Z 01O 73,76d46 2026-09-15T04:22:04.961144Z 01O < a 2026-09-15T04:22:04.961144Z 01O < 2026-09-15T04:22:04.961144Z 01O < 1: 1 2026-09-15T04:22:04.961145Z 01O < 2: 5 2026-09-15T04:22:04.961145Z 01O 143,145d112 2026-09-15T04:22:04.961145Z 01O < a 2026-09-15T04:22:04.961145Z 01O < 2026-09-15T04:22:04.961146Z 01O < 1: 9 2026-09-15T04:22:04.961146Z 01O 151,154d117 2026-09-15T04:22:04.961146Z 01O < a 2026-09-15T04:22:04.961147Z 01O < 2026-09-15T04:22:04.961147Z 01O < 1: 10 2026-09-15T04:22:04.961147Z 01O < 2: 10 2026-09-15T04:22:04.961172Z 01O 156,159d118 2026-09-15T04:22:04.961172Z 01O < a 2026-09-15T04:22:04.961172Z 01O < 2026-09-15T04:22:04.961173Z 01O < 1: 10 2026-09-15T04:22:04.961173Z 01O < 2: 10 2026-09-15T04:22:04.961173Z 01O 161,164d119 2026-09-15T04:22:04.961174Z 01O < a 2026-09-15T04:22:04.961174Z 01O < 2026-09-15T04:22:04.961174Z 01O < 1: 10 2026-09-15T04:22:04.961175Z 01O < 2: 10 2026-09-15T04:22:04.961175Z 01O 210,212d164 2026-09-15T04:22:04.961175Z 01O < x y 2026-09-15T04:22:04.961176Z 01O < 2026-09-15T04:22:04.961176Z 01O < 1: 1 1 2026-09-15T04:22:04.958120Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-09-15T04:27:36.155310Z 01E Running ‘litedown.R’ 2026-09-15T04:27:36.326775Z 01E Running ‘main.R’ 2026-09-15T04:28:02.213115Z 01E Running ‘mergelist.R’ 2026-09-15T04:28:02.919649Z 01E Running ‘nafill.R’ 2026-09-15T04:28:03.166733Z 01E Running ‘optimize.R’ 2026-09-15T04:28:03.885043Z 01E Running ‘other.R’ 2026-09-15T04:28:04.017592Z 01E Running ‘programming.R’ 2026-09-15T04:28:04.405584Z 01E Running ‘S4.R’ 2026-09-15T04:28:04.599163Z 01E Running ‘self.R’ 2026-09-15T04:28:04.734566Z 01E Running ‘types.R’ 2026-09-15T04:28:04.892957Z 01O OK 2026-09-15T04:28:04.893243Z 01O * DONE 2026-09-15T04:28:04.893610Z 01E 2026-09-15T04:28:04.894052Z 01O Status: 3 NOTEs 2026-09-15T04:28:04.894097Z 01E See 2026-09-15T04:28:04.894098Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-09-15T04:28:04.894099Z 01E for details. 2026-09-15T04:28:04.894099Z 01E 2026-09-15T04:28:04.894100Z 01E 2026-09-15T04:28:05.147266Z 00O section_end:1789446485:step_script  2026-09-15T04:28:05.148434Z 00O+section_start:1789446485:after_script  2026-09-15T04:28:05.148443Z 00O+Running after_script 2026-09-15T04:28:05.534446Z 01O Running after script... 2026-09-15T04:28:05.534477Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-09-15T04:28:05.536349Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-09-15T04:28:05.536351Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-09-15T04:28:05.536352Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-09-15T04:28:05.536353Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-09-15T04:28:05.750024Z 00O section_end:1789446485:after_script  2026-09-15T04:28:05.750734Z 00O+section_start:1789446485:upload_artifacts_on_success  2026-09-15T04:28:05.750740Z 00O+Uploading artifacts for successful job 2026-09-15T04:28:06.207632Z 01O Uploading artifacts... 2026-09-15T04:28:06.251201Z 01E bus/test-lin-ancient-cran: found 701 matching artifact files and directories 2026-09-15T04:28:07.519057Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=4058e9f9042940b2bb2ef48f79511968 id=16501040606 status=201 token=73_gKsXsr 2026-09-15T04:28:07.676241Z 00O section_end:1789446487:upload_artifacts_on_success  2026-09-15T04:28:07.676712Z 00O+section_start:1789446487:cleanup_file_variables  2026-09-15T04:28:07.676719Z 00O+Cleaning up project directory and file based variables 2026-09-15T04:28:08.106637Z 00O section_end:1789446488:cleanup_file_variables  2026-09-15T04:28:08.125427Z 00O Job succeeded