2026-10-30T04:20:38.415549Z 00O Running with gitlab-runner 19.6.0~pre.2364.gcc7d9535 (cc7d9535) 2026-10-30T04:20:38.415564Z 00O  on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_9GNw7413xax7 2026-10-30T04:20:38.415566Z 00O  UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58 2026-10-30T04:20:38.415573Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true 2026-10-30T04:20:38.415597Z 00O Resolving secrets 2026-10-30T04:20:38.415726Z 00O section_start:1793334038:prepare_executor  2026-10-30T04:20:38.415729Z 00O+Preparing the "docker+machine" executor 2026-10-30T04:20:38.485715Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-10-30T04:20:38.485773Z 00O Using helper image: us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 ) 2026-10-30T04:20:38.485781Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 2026-10-30T04:20:38.486372Z 00O Pulling docker image us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 ... 2026-10-30T04:20:39.529322Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ... 2026-10-30T04:20:40.958574Z 00O Using helper image: us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 ) 2026-10-30T04:20:40.958585Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 2026-10-30T04:20:40.959368Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ... 2026-10-30T04:20:40.959376Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-10-30T04:20:40.959924Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-10-30T04:20:40.959929Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ... 2026-10-30T04:21:13.271415Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-10-30T04:21:13.271487Z 00O section_end:1793334073:prepare_executor  2026-10-30T04:21:13.271593Z 00O+section_start:1793334073:prepare_script  2026-10-30T04:21:13.271598Z 00O+Preparing environment 2026-10-30T04:21:13.271639Z 00O Using helper image: us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 (overridden, default would be registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 ) 2026-10-30T04:21:13.271650Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 2026-10-30T04:21:13.272510Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ... 2026-10-30T04:21:13.272518Z 00O Using effective pull policy of [always] for container sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 2026-10-30T04:21:20.665577Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1793333777-9cb97f80... 2026-10-30T04:21:20.667701Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f) 2026-10-30T04:21:20.794827Z 00O section_end:1793334080:prepare_script  2026-10-30T04:21:20.795178Z 00O+section_start:1793334080:get_sources  2026-10-30T04:21:20.795183Z 00O+Getting source from Git repository 2026-10-30T04:21:21.032274Z 01O Gitaly correlation ID: 267bbdc2b2ed4c7f8aa5292f5b58f063 2026-10-30T04:21:21.036274Z 01O Fetching changes... 2026-10-30T04:21:21.038165Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-10-30T04:21:21.040178Z 01O Created fresh repository. 2026-10-30T04:21:25.286626Z 01O Checking out 086c6466 as detached HEAD (ref is master)... 2026-10-30T04:21:25.413541Z 01O 2026-10-30T04:21:25.413545Z 01O Skipping Git submodules setup 2026-10-30T04:21:25.413547Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-10-30T04:21:25.573285Z 00O section_end:1793334085:get_sources  2026-10-30T04:21:25.573732Z 00O+section_start:1793334085:download_artifacts  2026-10-30T04:21:25.573748Z 00O+Downloading artifacts 2026-10-30T04:21:25.849306Z 01O Downloading artifacts for build (17597456896)... 2026-10-30T04:21:26.023280Z 01E Direct download from storage.googleapis.com  correlation_id=f52da2faf70443759041fa8343a82eab id=17597456896 status=302 token=74_dyDrue 2026-10-30T04:21:26.196816Z 01E Downloading artifacts from coordinator... ok  correlation_id=f52da2faf70443759041fa8343a82eab id=17597456896 status=302 token=74_dyDrue 2026-10-30T04:21:26.204318Z 01O Downloading artifacts for mirror-packages (17597456894)... 2026-10-30T04:21:26.422484Z 01E Direct download from storage.googleapis.com  correlation_id=bcbda14a73574f2fbf19c0a9f7b45b0f id=17597456894 status=302 token=74_dyDrue 2026-10-30T04:21:26.968393Z 01E Downloading artifacts from coordinator... ok  correlation_id=bcbda14a73574f2fbf19c0a9f7b45b0f id=17597456894 status=302 token=74_dyDrue 2026-10-30T04:21:28.046970Z 00O section_end:1793334088:download_artifacts  2026-10-30T04:21:28.047315Z 00O+section_start:1793334088:step_script  2026-10-30T04:21:28.047360Z 00O+Executing "step_script" stage of the job script 2026-10-30T04:21:28.047373Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 2026-10-30T04:21:28.048077Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ... 2026-10-30T04:21:28.287892Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-10-30T04:21:28.293044Z 01O $ mkdir -p ~/.R 2026-10-30T04:21:28.293830Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-10-30T04:21:28.423142Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’ 2026-10-30T04:21:28.423148Z 01E 2026-10-30T04:21:54.273030Z 01E Updating HTML index of packages in '.Library' 2026-10-30T04:21:54.273098Z 01E Making 'packages.html' ... done 2026-10-30T04:21:54.280576Z 01E Warning message: 2026-10-30T04:21:54.280576Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 2026-10-30T04:21:54.283941Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1) 2026-10-30T04:21:54.397487Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-10-30T04:21:54.397500Z 01O * using R version 3.5.0 (2018-04-23) 2026-10-30T04:21:54.397600Z 01O * using platform: x86_64-pc-linux-gnu (64-bit) 2026-10-30T04:21:54.397715Z 01O * using session charset: UTF-8 2026-10-30T04:21:54.743618Z 01O * using options ‘--no-manual --ignore-vignettes’ 2026-10-30T04:21:54.743709Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-10-30T04:21:54.745397Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-10-30T04:21:54.745474Z 01O * package encoding: UTF-8 2026-10-30T04:21:54.745610Z 01O * checking package namespace information ... OK 2026-10-30T04:21:54.749095Z 01O * checking package dependencies ... NOTE 2026-10-30T04:21:58.052435Z 01O Package suggested but not available for checking: ‘xts’ 2026-10-30T04:21:58.052438Z 01O 2026-10-30T04:21:58.052439Z 01O Package which this enhances but not available for checking: ‘knitr’ 2026-10-30T04:21:58.052440Z 01O * checking if this is a source package ... OK 2026-10-30T04:21:58.054701Z 01O * checking if there is a namespace ... OK 2026-10-30T04:21:58.058070Z 01O * checking for executable files ... OK 2026-10-30T04:21:58.702903Z 01O * checking for hidden files and directories ... OK 2026-10-30T04:21:58.704335Z 01O * checking for portable file names ... OK 2026-10-30T04:21:58.708784Z 01O * checking for sufficient/correct file permissions ... OK 2026-10-30T04:21:58.709982Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-10-30T04:22:13.052416Z 01O * checking installed package size ... NOTE 2026-10-30T04:22:13.054344Z 01O installed size is 9.0Mb 2026-10-30T04:22:13.054898Z 01O sub-directories of 1Mb or more: 2026-10-30T04:22:13.055314Z 01O doc 1.1Mb 2026-10-30T04:22:13.055316Z 01O libs 2.6Mb 2026-10-30T04:22:13.055316Z 01O po 1.7Mb 2026-10-30T04:22:13.055317Z 01O tests 2.2Mb 2026-10-30T04:22:13.055401Z 01O * checking package directory ... OK 2026-10-30T04:22:13.055594Z 01O * checking DESCRIPTION meta-information ... OK 2026-10-30T04:22:13.182334Z 01O * checking top-level files ... OK 2026-10-30T04:22:13.182538Z 01O * checking for left-over files ... OK 2026-10-30T04:22:13.184227Z 01O * checking index information ... OK 2026-10-30T04:22:13.282646Z 01O * checking package subdirectories ... OK 2026-10-30T04:22:13.408037Z 01O * checking R files for non-ASCII characters ... OK 2026-10-30T04:22:13.437996Z 01O * checking R files for syntax errors ... OK 2026-10-30T04:22:13.500209Z 01O * checking whether the package can be loaded ... OK 2026-10-30T04:22:13.616549Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-10-30T04:22:13.707244Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-10-30T04:22:13.798183Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-10-30T04:22:13.888057Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-10-30T04:22:14.003521Z 01O * checking loading without being on the library search path ... OK 2026-10-30T04:22:14.115679Z 01O * checking dependencies in R code ... OK 2026-10-30T04:22:14.510922Z 01O * checking S3 generic/method consistency ... OK 2026-10-30T04:22:15.002245Z 01O * checking replacement functions ... OK 2026-10-30T04:22:15.117847Z 01O * checking foreign function calls ... OK 2026-10-30T04:22:15.502602Z 01O * checking R code for possible problems ... OK 2026-10-30T04:22:20.605128Z 01O * checking Rd files ... OK 2026-10-30T04:22:20.818711Z 01O * checking Rd metadata ... OK 2026-10-30T04:22:20.846583Z 01O * checking Rd cross-references ... OK 2026-10-30T04:22:20.989494Z 01O * checking for missing documentation entries ... OK 2026-10-30T04:22:21.124636Z 01O * checking for code/documentation mismatches ... OK 2026-10-30T04:22:21.732300Z 01O * checking Rd \usage sections ... OK 2026-10-30T04:22:22.485345Z 01O * checking Rd contents ... OK 2026-10-30T04:22:22.688796Z 01O * checking for unstated dependencies in examples ... OK 2026-10-30T04:22:22.977352Z 01O * checking line endings in shell scripts ... OK 2026-10-30T04:22:22.977786Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-10-30T04:22:22.983512Z 01O * checking line endings in Makefiles ... OK 2026-10-30T04:22:22.983782Z 01O * checking compilation flags in Makevars ... OK 2026-10-30T04:22:23.017811Z 01O * checking for GNU extensions in Makefiles ... OK 2026-10-30T04:22:23.018255Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-10-30T04:22:23.019782Z 01O * checking compiled code ... NOTE 2026-10-30T04:22:23.056356Z 01O File ‘data.table/libs/data.table.so’: 2026-10-30T04:22:23.056358Z 01O Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’ 2026-10-30T04:22:23.056765Z 01O 2026-10-30T04:22:23.056766Z 01O Compiled code should not call non-API entry points in R. 2026-10-30T04:22:23.056766Z 01O 2026-10-30T04:22:23.056767Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. 2026-10-30T04:22:23.057013Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-10-30T04:22:23.115482Z 01O * checking files in ‘vignettes’ ... SKIPPED 2026-10-30T04:22:23.115661Z 01O * checking examples ... OK 2026-10-30T04:22:25.564468Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-10-30T04:22:25.604851Z 01O * checking tests ... 2026-10-30T04:22:25.697779Z 01E Running ‘autoprint.R’ 2026-10-30T04:22:25.857660Z 01O 18,21d17 2026-10-30T04:22:25.857661Z 01O < a 2026-10-30T04:22:25.857661Z 01O < 2026-10-30T04:22:25.857662Z 01O < 1: 1 2026-10-30T04:22:25.857662Z 01O < 2: 3 2026-10-30T04:22:25.857663Z 01O 28,31d23 2026-10-30T04:22:25.857663Z 01O < a 2026-10-30T04:22:25.857663Z 01O < 2026-10-30T04:22:25.857664Z 01O < 1: 1 2026-10-30T04:22:25.857664Z 01O < 2: 3 2026-10-30T04:22:25.857664Z 01O 33,37d24 2026-10-30T04:22:25.857665Z 01O < Index: 2026-10-30T04:22:25.857665Z 01O < a 2026-10-30T04:22:25.857665Z 01O < 2026-10-30T04:22:25.857665Z 01O < 1: 1 2026-10-30T04:22:25.857666Z 01O < 2: 3 2026-10-30T04:22:25.857666Z 01O 39,43d25 2026-10-30T04:22:25.857666Z 01O < Index: 2026-10-30T04:22:25.857666Z 01O < a 2026-10-30T04:22:25.857667Z 01O < 2026-10-30T04:22:25.857667Z 01O < 1: 1 2026-10-30T04:22:25.857667Z 01O < 2: 3 2026-10-30T04:22:25.857667Z 01O 61,64d42 2026-10-30T04:22:25.857668Z 01O < a 2026-10-30T04:22:25.857668Z 01O < 2026-10-30T04:22:25.857668Z 01O < 1: 1 2026-10-30T04:22:25.857668Z 01O < 2: 5 2026-10-30T04:22:25.857669Z 01O 66,69d43 2026-10-30T04:22:25.857669Z 01O < a 2026-10-30T04:22:25.857669Z 01O < 2026-10-30T04:22:25.857669Z 01O < 1: 1 2026-10-30T04:22:25.857670Z 01O < 2: 6 2026-10-30T04:22:25.857670Z 01O 73,76d46 2026-10-30T04:22:25.857670Z 01O < a 2026-10-30T04:22:25.857670Z 01O < 2026-10-30T04:22:25.857671Z 01O < 1: 1 2026-10-30T04:22:25.857671Z 01O < 2: 5 2026-10-30T04:22:25.857671Z 01O 143,145d112 2026-10-30T04:22:25.857671Z 01O < a 2026-10-30T04:22:25.857672Z 01O < 2026-10-30T04:22:25.857672Z 01O < 1: 9 2026-10-30T04:22:25.857672Z 01O 151,154d117 2026-10-30T04:22:25.857672Z 01O < a 2026-10-30T04:22:25.857673Z 01O < 2026-10-30T04:22:25.857673Z 01O < 1: 10 2026-10-30T04:22:25.857673Z 01O < 2: 10 2026-10-30T04:22:25.857673Z 01O 156,159d118 2026-10-30T04:22:25.857674Z 01O < a 2026-10-30T04:22:25.857674Z 01O < 2026-10-30T04:22:25.857674Z 01O < 1: 10 2026-10-30T04:22:25.857674Z 01O < 2: 10 2026-10-30T04:22:25.857704Z 01O 161,164d119 2026-10-30T04:22:25.857705Z 01O < a 2026-10-30T04:22:25.857705Z 01O < 2026-10-30T04:22:25.857705Z 01O < 1: 10 2026-10-30T04:22:25.857705Z 01O < 2: 10 2026-10-30T04:22:25.857706Z 01O 210,212d164 2026-10-30T04:22:25.857706Z 01O < x y 2026-10-30T04:22:25.857706Z 01O < 2026-10-30T04:22:25.857706Z 01O < 1: 1 1 2026-10-30T04:22:25.854559Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... Running ‘froll.R’ 2026-10-30T04:27:57.620474Z 01E Running ‘litedown.R’ 2026-10-30T04:27:57.806406Z 01E Running ‘main.R’ 2026-10-30T04:28:21.941927Z 01E Running ‘mergelist.R’ 2026-10-30T04:28:22.768218Z 01E Running ‘nafill.R’ 2026-10-30T04:28:23.053033Z 01E Running ‘optimize.R’ 2026-10-30T04:28:25.262612Z 01E Running ‘other.R’ 2026-10-30T04:28:25.392082Z 01E Running ‘programming.R’ 2026-10-30T04:28:25.714760Z 01E Running ‘S4.R’ 2026-10-30T04:28:25.895053Z 01E Running ‘self.R’ 2026-10-30T04:28:26.027862Z 01E Running ‘types.R’ 2026-10-30T04:28:26.168868Z 01O OK 2026-10-30T04:28:26.169561Z 01O * DONE 2026-10-30T04:28:26.170095Z 01E 2026-10-30T04:28:26.170160Z 01O Status: 3 NOTEs 2026-10-30T04:28:26.170295Z 01E See 2026-10-30T04:28:26.170295Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-10-30T04:28:26.170296Z 01E for details. 2026-10-30T04:28:26.170296Z 01E 2026-10-30T04:28:26.170434Z 01E 2026-10-30T04:28:26.312515Z 00O section_end:1793334506:step_script  2026-10-30T04:28:26.312897Z 00O+section_start:1793334506:after_script  2026-10-30T04:28:26.312902Z 00O+Running after_script 2026-10-30T04:28:26.542180Z 01O Running after script... 2026-10-30T04:28:26.542200Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-10-30T04:28:26.542916Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-10-30T04:28:26.542918Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-10-30T04:28:26.542948Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-10-30T04:28:26.542990Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-10-30T04:28:26.667748Z 00O section_end:1793334506:after_script  2026-10-30T04:28:26.668384Z 00O+section_start:1793334506:upload_artifacts_on_success  2026-10-30T04:28:26.668389Z 00O+Uploading artifacts for successful job 2026-10-30T04:28:26.923589Z 01O Uploading artifacts... 2026-10-30T04:28:26.960562Z 01E bus/test-lin-ancient-cran: found 701 matching artifact files and directories 2026-10-30T04:28:28.115697Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=fd467ac43a3c4c6bb3bc42d2d36033fd id=17597456902 status=201 token=74_dyDrue 2026-10-30T04:28:28.248405Z 00O section_end:1793334508:upload_artifacts_on_success  2026-10-30T04:28:28.248841Z 00O+section_start:1793334508:cleanup_file_variables  2026-10-30T04:28:28.248846Z 00O+Cleaning up project directory and file based variables 2026-10-30T04:28:28.610702Z 00O section_end:1793334508:cleanup_file_variables  2026-10-30T04:28:28.625881Z 00O Job succeeded