2026-09-16T04:20:26.515709Z 00O Running with gitlab-runner 19.4.0~pre.1956.g7b010e09 (7b010e09)
2026-09-16T04:20:26.515728Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_OYL2AlJRdP1x
2026-09-16T04:20:26.515731Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-09-16T04:20:26.515738Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true
2026-09-16T04:20:26.515765Z 00O Resolving secrets
2026-09-16T04:20:26.515993Z 00O section_start:1789532426:prepare_executor

2026-09-16T04:20:26.515997Z 00O+Preparing the "docker+machine" executor
2026-09-16T04:20:26.691977Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ...
2026-09-16T04:20:26.692030Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-16T04:20:26.692041Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-16T04:20:26.692856Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-16T04:20:26.692869Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 ...
2026-09-16T04:20:28.115782Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-16T04:20:29.802641Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-16T04:20:29.802656Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-16T04:20:29.803713Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-16T04:20:29.803736Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0
2026-09-16T04:20:29.804522Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-16T04:20:29.804534Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 ...
2026-09-16T04:21:09.164869Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ...
2026-09-16T04:21:09.164995Z 00O section_end:1789532469:prepare_executor

2026-09-16T04:21:09.165112Z 00O+section_start:1789532469:prepare_script

2026-09-16T04:21:09.165119Z 00O+Preparing environment
2026-09-16T04:21:09.165166Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-16T04:21:09.165180Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-16T04:21:09.166183Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-16T04:21:09.166196Z 00O Using effective pull policy of [always] for container sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef
2026-09-16T04:21:19.058747Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1789532350-366fb3c3...
2026-09-16T04:21:19.219722Z 00O section_end:1789532479:prepare_script

2026-09-16T04:21:19.220368Z 00O+section_start:1789532479:get_sources

2026-09-16T04:21:19.220377Z 00O+Getting source from Git repository
2026-09-16T04:21:19.599332Z 01O Gitaly correlation ID: 975157d1a7594c10a831d473b02b9aa1
2026-09-16T04:21:19.605435Z 01O Fetching changes...
2026-09-16T04:21:19.609600Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-09-16T04:21:19.612134Z 01O Created fresh repository.
2026-09-16T04:21:25.402040Z 01O Checking out a3eeb4c0 as detached HEAD (ref is master)...
2026-09-16T04:21:25.592944Z 01O 
2026-09-16T04:21:25.592953Z 01O Skipping Git submodules setup
2026-09-16T04:21:25.592966Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-09-16T04:21:25.807340Z 00O section_end:1789532485:get_sources

2026-09-16T04:21:25.808566Z 00O+section_start:1789532485:download_artifacts

2026-09-16T04:21:25.808575Z 00O+Downloading artifacts
2026-09-16T04:21:26.216320Z 01O Downloading artifacts for mirror-packages (16527545484)...
2026-09-16T04:21:26.470154Z 01E Direct download from storage.googleapis.com         correlation_id=755fc7b2ff4b4b2caa2614974b4f4f79 id=16527545484 status=302 token=73_79uozi
2026-09-16T04:21:27.034463Z 01E Downloading artifacts from coordinator... ok        correlation_id=755fc7b2ff4b4b2caa2614974b4f4f79 id=16527545484 status=302 token=73_79uozi
2026-09-16T04:21:27.489120Z 01O Downloading artifacts for build (16527545485)...
2026-09-16T04:21:27.735045Z 01E Direct download from storage.googleapis.com         correlation_id=b98e4bf96c4c4419a48578d40be96c38 id=16527545485 status=302 token=73_79uozi
2026-09-16T04:21:28.001320Z 01E Downloading artifacts from coordinator... ok        correlation_id=b98e4bf96c4c4419a48578d40be96c38 id=16527545485 status=302 token=73_79uozi
2026-09-16T04:21:28.632710Z 00O section_end:1789532488:download_artifacts

2026-09-16T04:21:28.633181Z 00O+section_start:1789532488:step_script

2026-09-16T04:21:28.633191Z 00O+Executing "step_script" stage of the job script
2026-09-16T04:21:28.633204Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0
2026-09-16T04:21:28.634279Z 00O Using docker image sha256:82ffa34a9a925bfecd1bf24bb3e78896fd356e1e68f45dd1566949d137bc89b4 for registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0 with digest registry.gitlab.com/rdatatable/dockerfiles/r-3.5.0@sha256:205afe10a22db0df2bf3357b0b05860f4e49b76beabd9b4eefdda77c8eefc48e ...
2026-09-16T04:21:28.995429Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-09-16T04:21:29.005801Z 01O $ mkdir -p ~/.R
2026-09-16T04:21:29.007601Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-09-16T04:21:29.212057Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’
2026-09-16T04:21:29.212066Z 01E 
2026-09-16T04:22:11.595784Z 01E Updating HTML index of packages in '.Library'
2026-09-16T04:22:11.595929Z 01E Making 'packages.html' ... done
2026-09-16T04:22:11.608311Z 01E Warning message:
2026-09-16T04:22:11.608314Z 01E packages ‘xts’, ‘knitr’ are not available (for R version 3.5.0) 
2026-09-16T04:22:11.617513Z 01O $ R CMD check --no-manual --no-build-vignettes --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-09-16T04:22:11.785505Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-09-16T04:22:11.785766Z 01O * using R version 3.5.0 (2018-04-23)
2026-09-16T04:22:11.786235Z 01O * using platform: x86_64-pc-linux-gnu (64-bit)
2026-09-16T04:22:11.786425Z 01O * using session charset: UTF-8
2026-09-16T04:22:12.374656Z 01O * using options ‘--no-manual --ignore-vignettes’
2026-09-16T04:22:12.374928Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-09-16T04:22:12.377627Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-09-16T04:22:12.377912Z 01O * package encoding: UTF-8
2026-09-16T04:22:12.378113Z 01O * checking package namespace information ... OK
2026-09-16T04:22:12.384301Z 01O * checking package dependencies ... NOTE
2026-09-16T04:22:16.587293Z 01O Package suggested but not available for checking: ‘xts’
2026-09-16T04:22:16.587298Z 01O 
2026-09-16T04:22:16.587299Z 01O Package which this enhances but not available for checking: ‘knitr’
2026-09-16T04:22:16.587311Z 01O * checking if this is a source package ... OK
2026-09-16T04:22:16.591129Z 01O * checking if there is a namespace ... OK
2026-09-16T04:22:16.596637Z 01O * checking for executable files ... OK
2026-09-16T04:22:17.420093Z 01O * checking for hidden files and directories ... OK
2026-09-16T04:22:17.423567Z 01O * checking for portable file names ... OK
2026-09-16T04:22:17.430624Z 01O * checking for sufficient/correct file permissions ... OK
2026-09-16T04:22:17.432653Z 01O * checking whether package ‘data.table’ can be installed ... OK
2026-09-16T04:22:39.472494Z 01O * checking installed package size ... NOTE
2026-09-16T04:22:39.475705Z 01O   installed size is  9.0Mb
2026-09-16T04:22:39.476478Z 01O   sub-directories of 1Mb or more:
2026-09-16T04:22:39.476941Z 01O     doc     1.1Mb
2026-09-16T04:22:39.476944Z 01O     libs    2.6Mb
2026-09-16T04:22:39.476946Z 01O     po      1.7Mb
2026-09-16T04:22:39.476946Z 01O     tests   2.2Mb
2026-09-16T04:22:39.477149Z 01O * checking package directory ... OK
2026-09-16T04:22:39.635629Z 01E Warning in c.person(person("Tyson", "Barrett", role = c("aut", "cre"), email = "t.barrett88@gmail.com",  :
2026-09-16T04:22:39.635637Z 01E   method is only applicable to ‘person’ objects
2026-09-16T04:22:39.477539Z 01O * checking DESCRIPTION meta-information ... OK
2026-09-16T04:22:39.669619Z 01O * checking top-level files ... OK
2026-09-16T04:22:39.670014Z 01O * checking for left-over files ... OK
2026-09-16T04:22:39.673195Z 01O * checking index information ... OK
2026-09-16T04:22:39.822542Z 01O * checking package subdirectories ... OK
2026-09-16T04:22:40.017395Z 01O * checking R files for non-ASCII characters ... OK
2026-09-16T04:22:40.070230Z 01O * checking R files for syntax errors ... OK
2026-09-16T04:22:40.176499Z 01O * checking whether the package can be loaded ... OK
2026-09-16T04:22:40.370241Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-09-16T04:22:40.524836Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-09-16T04:22:40.677916Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-09-16T04:22:40.830390Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-09-16T04:22:41.017734Z 01O * checking loading without being on the library search path ... OK
2026-09-16T04:22:41.211253Z 01O * checking dependencies in R code ... OK
2026-09-16T04:22:41.885260Z 01O * checking S3 generic/method consistency ... OK
2026-09-16T04:22:42.647933Z 01O * checking replacement functions ... OK
2026-09-16T04:22:42.830539Z 01O * checking foreign function calls ... OK
2026-09-16T04:22:43.499101Z 01O * checking R code for possible problems ... OK
2026-09-16T04:22:52.545410Z 01O * checking Rd files ... OK
2026-09-16T04:22:52.891533Z 01O * checking Rd metadata ... OK
2026-09-16T04:22:52.935245Z 01O * checking Rd cross-references ... OK
2026-09-16T04:22:53.170735Z 01O * checking for missing documentation entries ... OK
2026-09-16T04:22:53.381563Z 01O * checking for code/documentation mismatches ... OK
2026-09-16T04:22:54.338501Z 01O * checking Rd \usage sections ... OK
2026-09-16T04:22:55.538978Z 01O * checking Rd contents ... OK
2026-09-16T04:22:55.915783Z 01O * checking for unstated dependencies in examples ... OK
2026-09-16T04:22:56.418393Z 01O * checking line endings in shell scripts ... OK
2026-09-16T04:22:56.419033Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-09-16T04:22:56.426923Z 01O * checking line endings in Makefiles ... OK
2026-09-16T04:22:56.427376Z 01O * checking compilation flags in Makevars ... OK
2026-09-16T04:22:56.487242Z 01O * checking for GNU extensions in Makefiles ... OK
2026-09-16T04:22:56.488014Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-09-16T04:22:56.490637Z 01O * checking compiled code ... NOTE
2026-09-16T04:22:56.549439Z 01O File ‘data.table/libs/data.table.so’:
2026-09-16T04:22:56.549442Z 01O   Found non-API calls to R: ‘R_GetConnection’, ‘R_ReadConnection’
2026-09-16T04:22:56.549960Z 01O 
2026-09-16T04:22:56.549964Z 01O Compiled code should not call non-API entry points in R.
2026-09-16T04:22:56.549967Z 01O 
2026-09-16T04:22:56.549967Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
2026-09-16T04:22:56.550375Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-09-16T04:22:56.622821Z 01O * checking files in ‘vignettes’ ... SKIPPED
2026-09-16T04:22:56.623141Z 01O * checking examples ... OK
2026-09-16T04:23:00.069145Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-09-16T04:23:00.132861Z 01O * checking tests ...
2026-09-16T04:23:00.271928Z 01E   Running ‘autoprint.R’
2026-09-16T04:23:00.510155Z 01O 18,21d17
2026-09-16T04:23:00.510161Z 01O <        a
2026-09-16T04:23:00.510162Z 01O <    <int>
2026-09-16T04:23:00.510163Z 01O < 1:     1
2026-09-16T04:23:00.510164Z 01O < 2:     3
2026-09-16T04:23:00.510165Z 01O 28,31d23
2026-09-16T04:23:00.510166Z 01O <        a
2026-09-16T04:23:00.510167Z 01O <    <int>
2026-09-16T04:23:00.510168Z 01O < 1:     1
2026-09-16T04:23:00.510169Z 01O < 2:     3
2026-09-16T04:23:00.510170Z 01O 33,37d24
2026-09-16T04:23:00.510170Z 01O < Index: <a>
2026-09-16T04:23:00.510171Z 01O <        a
2026-09-16T04:23:00.510172Z 01O <    <int>
2026-09-16T04:23:00.510172Z 01O < 1:     1
2026-09-16T04:23:00.510173Z 01O < 2:     3
2026-09-16T04:23:00.510174Z 01O 39,43d25
2026-09-16T04:23:00.510174Z 01O < Index: <a>
2026-09-16T04:23:00.510175Z 01O <        a
2026-09-16T04:23:00.510175Z 01O <    <int>
2026-09-16T04:23:00.510176Z 01O < 1:     1
2026-09-16T04:23:00.510177Z 01O < 2:     3
2026-09-16T04:23:00.510177Z 01O 61,64d42
2026-09-16T04:23:00.510178Z 01O <        a
2026-09-16T04:23:00.510179Z 01O <    <int>
2026-09-16T04:23:00.510179Z 01O < 1:     1
2026-09-16T04:23:00.510180Z 01O < 2:     5
2026-09-16T04:23:00.510180Z 01O 66,69d43
2026-09-16T04:23:00.510181Z 01O <        a
2026-09-16T04:23:00.510181Z 01O <    <int>
2026-09-16T04:23:00.510182Z 01O < 1:     1
2026-09-16T04:23:00.510182Z 01O < 2:     6
2026-09-16T04:23:00.510183Z 01O 73,76d46
2026-09-16T04:23:00.510183Z 01O <        a
2026-09-16T04:23:00.510184Z 01O <    <int>
2026-09-16T04:23:00.510184Z 01O < 1:     1
2026-09-16T04:23:00.510197Z 01O < 2:     5
2026-09-16T04:23:00.510198Z 01O 143,145d112
2026-09-16T04:23:00.510198Z 01O <        a
2026-09-16T04:23:00.510198Z 01O <    <int>
2026-09-16T04:23:00.510199Z 01O < 1:     9
2026-09-16T04:23:00.510199Z 01O 151,154d117
2026-09-16T04:23:00.510199Z 01O <        a
2026-09-16T04:23:00.510200Z 01O <    <int>
2026-09-16T04:23:00.510200Z 01O < 1:    10
2026-09-16T04:23:00.510200Z 01O < 2:    10
2026-09-16T04:23:00.510201Z 01O 156,159d118
2026-09-16T04:23:00.510201Z 01O <        a
2026-09-16T04:23:00.510201Z 01O <    <int>
2026-09-16T04:23:00.510202Z 01O < 1:    10
2026-09-16T04:23:00.510202Z 01O < 2:    10
2026-09-16T04:23:00.510203Z 01O 161,164d119
2026-09-16T04:23:00.510203Z 01O <        a
2026-09-16T04:23:00.510203Z 01O <    <int>
2026-09-16T04:23:00.510204Z 01O < 1:    10
2026-09-16T04:23:00.510204Z 01O < 2:    10
2026-09-16T04:23:00.510204Z 01O 210,212d164
2026-09-16T04:23:00.510205Z 01O <        x     y
2026-09-16T04:23:00.510205Z 01O <    <num> <num>
2026-09-16T04:23:00.510205Z 01O < 1:     1     1
2026-09-16T04:23:00.504874Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...  Running ‘froll.R’
2026-09-16T04:32:27.157094Z 01E   Running ‘litedown.R’
2026-09-16T04:32:27.429448Z 01E   Running ‘main.R’
2026-09-16T04:33:08.049528Z 01E   Running ‘mergelist.R’
2026-09-16T04:33:09.381369Z 01E   Running ‘nafill.R’
2026-09-16T04:33:09.832902Z 01E   Running ‘optimize.R’
2026-09-16T04:33:11.068165Z 01E   Running ‘other.R’
2026-09-16T04:33:11.257681Z 01E   Running ‘programming.R’
2026-09-16T04:33:11.793824Z 01E   Running ‘S4.R’
2026-09-16T04:33:12.087650Z 01E   Running ‘self.R’
2026-09-16T04:33:12.300652Z 01E   Running ‘types.R’
2026-09-16T04:33:12.524461Z 01O  OK
2026-09-16T04:33:12.525362Z 01O * DONE
2026-09-16T04:33:12.525752Z 01E 
2026-09-16T04:33:12.525770Z 01O Status: 3 NOTEs
2026-09-16T04:33:12.526015Z 01E See
2026-09-16T04:33:12.526018Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-09-16T04:33:12.526022Z 01E for details.
2026-09-16T04:33:12.526023Z 01E 
2026-09-16T04:33:12.526274Z 01E 
2026-09-16T04:33:12.714726Z 00O section_end:1789533192:step_script

2026-09-16T04:33:12.715199Z 00O+section_start:1789533192:after_script

2026-09-16T04:33:12.715206Z 00O+Running after_script
2026-09-16T04:33:13.059694Z 01O Running after script...
2026-09-16T04:33:13.059735Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-09-16T04:33:13.060773Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-09-16T04:33:13.060793Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-09-16T04:33:13.060922Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-09-16T04:33:13.061004Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-09-16T04:33:13.223405Z 00O section_end:1789533193:after_script

2026-09-16T04:33:13.224224Z 00O+section_start:1789533193:upload_artifacts_on_success

2026-09-16T04:33:13.224231Z 00O+Uploading artifacts for successful job
2026-09-16T04:33:13.617734Z 01O Uploading artifacts...
2026-09-16T04:33:13.673656Z 01E bus/test-lin-ancient-cran: found 701 matching artifact files and directories 
2026-09-16T04:33:15.330800Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=2a298ec555974a268b77dfce36df64e7 id=16527545491 status=201 token=73_79uozi
2026-09-16T04:33:15.507684Z 00O section_end:1789533195:upload_artifacts_on_success

2026-09-16T04:33:15.508092Z 00O+section_start:1789533195:cleanup_file_variables

2026-09-16T04:33:15.508100Z 00O+Cleaning up project directory and file based variables
2026-09-16T04:33:16.046931Z 00O section_end:1789533196:cleanup_file_variables

2026-09-16T04:33:16.076547Z 00O Job succeeded