Running with gitlab-runner 18.4.0~pre.195.g5de42c65 (5de42c65)  on green-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default XC_pLo7y6, system ID: s_e492edf4e5ae Resolving secrets section_start:1761711706:prepare_executor Preparing the "docker+machine" executor Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san Authenticating with credentials from job payload (GitLab Registry) Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... Using docker image sha256:e20371ff52f627007fa51165f5b5e7e4d82e00119641c56773d12d8f0c75fd26 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:094403e44796751decef6d03f5cc91904864e59bd82002a4895f3a007372c3e8 ... section_end:1761711742:prepare_executor section_start:1761711742:prepare_script Preparing environment Using effective pull policy of [always] for container sha256:5d8301dfedda3f47420c43713d1dbae83cd64a3714f93c79a81181500e640b57 Running on runner-xcplo7y6-project-3622566-concurrent-0 via runner-xcplo7y6-s-l-m-amd64-1761711589-1a5eba11... section_end:1761711753:prepare_script section_start:1761711753:get_sources Getting source from Git repository Gitaly correlation ID: 97a1596312c74d15b227619ea171b043 Fetching changes... Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ Created fresh repository. Checking out 681e0cb3 as detached HEAD (ref is master)... Skipping Git submodules setup $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' section_end:1761711759:get_sources section_start:1761711759:download_artifacts Downloading artifacts Downloading artifacts for build (11889318930)... Downloading artifacts from coordinator... ok  correlation_id=ec46f6a4a6f040c18f79071ba6328d70 host=storage.googleapis.com id=11889318930 responseStatus=200 OK token=6b_Z4tYYu Downloading artifacts for mirror-packages (11889318928)... Downloading artifacts from coordinator... ok  correlation_id=e5cff4e9e7134052a250dcf2603bb0f3 host=storage.googleapis.com id=11889318928 responseStatus=200 OK token=6b_Z4tYYu section_end:1761711762:download_artifacts section_start:1761711762:step_script Executing "step_script" stage of the job script Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san Using docker image sha256:e20371ff52f627007fa51165f5b5e7e4d82e00119641c56773d12d8f0c75fd26 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:094403e44796751decef6d03f5cc91904864e59bd82002a4895f3a007372c3e8 ... $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . $ mkdir -p ~/.R $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' also installing the dependencies ‘commonmark’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘evaluate’, ‘highr’, ‘xfun’, ‘litedown’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ * using R Under development (unstable) (2025-10-27 r88972) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (7) GNU Fortran (Debian 15.2.0-4) 15.2.0 * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘data.table/DESCRIPTION’ ... OK * this is package ‘data.table’ version ‘1.17.99’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for .dll and .exe files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘data.table’ can be installed ... OK * used C compiler: ‘Debian clang version 19.1.7 (7)’ * checking installed package size ... INFO installed size is 10.7Mb sub-directories of 1Mb or more: doc 1.0Mb libs 4.6Mb po 1.6Mb tests 2.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE File ‘data.table/libs/data_table.so’: Found non-API calls to R: ‘Rf_GetOption’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ Running ‘mergelist.R’ Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘S4.R’ Running ‘types.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * DONE Status: 1 NOTE See ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ for details. section_end:1761714079:step_script section_start:1761714079:after_script Running after_script Running after script... $ mkdir -p bus/$CI_JOB_NAME $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ section_end:1761714079:after_script section_start:1761714079:upload_artifacts_on_success Uploading artifacts for successful job Uploading artifacts... bus/test-lin-dev-clang-san: found 668 matching artifact files and directories Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=fc0f194f9372480b8b561b58fcdbe62b id=11889318958 responseStatus=201 Created token=6b_Z4tYYu section_end:1761714083:upload_artifacts_on_success section_start:1761714083:cleanup_file_variables Cleaning up project directory and file based variables section_end:1761714083:cleanup_file_variables Job succeeded