2026-07-31T04:21:49.351708Z 00O Running with gitlab-runner 19.2.0~pre.1355.g471b878c (471b878c) 2026-07-31T04:21:49.351721Z 00O  on green-1.saas-linux-medium-amd64.runners-manager.gitlab.com/default _2KYLxN2j, system ID: s_e3d0e4a7da2c 2026-07-31T04:21:49.351726Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true 2026-07-31T04:21:49.351753Z 00O Resolving secrets 2026-07-31T04:21:49.351889Z 00O section_start:1785471709:prepare_executor  2026-07-31T04:21:49.351892Z 00O+Preparing the "docker+machine" executor 2026-07-31T04:21:49.481940Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... 2026-07-31T04:21:53.169869Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san 2026-07-31T04:21:53.170499Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-07-31T04:21:53.170508Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... 2026-07-31T04:22:11.460637Z 00O Using docker image sha256:d181cdd3cb74d0eb7cd2425feb6114cdb0cd30f18b4fbfa8781088fbc9fa85f6 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:38d509a73b7c3ed97dbaf608566c8c0403558e6284b80985a1d297d4fa7b1141 ... 2026-07-31T04:22:11.460727Z 00O section_end:1785471731:prepare_executor  2026-07-31T04:22:11.460820Z 00O+section_start:1785471731:prepare_script  2026-07-31T04:22:11.460824Z 00O+Preparing environment 2026-07-31T04:22:11.461649Z 00O Using effective pull policy of [always] for container sha256:bc416733f1d3d890fafebb0374079c4859888751c62bbafd225417d5d222f509 2026-07-31T04:22:17.709581Z 01O Running on runner-2kylxn2j-project-3622566-concurrent-0 via runner-2kylxn2j-s-l-m-amd64-1785471260-dd690660... 2026-07-31T04:22:17.870787Z 00O section_end:1785471737:prepare_script  2026-07-31T04:22:17.871309Z 00O+section_start:1785471737:get_sources  2026-07-31T04:22:17.871316Z 00O+Getting source from Git repository 2026-07-31T04:22:18.224949Z 01O Gitaly correlation ID: 4e19401f589543efbd0be27f6ac36f96 2026-07-31T04:22:18.232059Z 01O Fetching changes... 2026-07-31T04:22:18.235466Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-07-31T04:22:18.237776Z 01O Created fresh repository. 2026-07-31T04:22:23.836219Z 01O Checking out 7bc8bc13 as detached HEAD (ref is master)... 2026-07-31T04:22:24.020659Z 01O 2026-07-31T04:22:24.020667Z 01O Skipping Git submodules setup 2026-07-31T04:22:24.020675Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-07-31T04:22:24.215258Z 00O section_end:1785471744:get_sources  2026-07-31T04:22:24.215985Z 00O+section_start:1785471744:download_artifacts  2026-07-31T04:22:24.215993Z 00O+Downloading artifacts 2026-07-31T04:22:24.573094Z 01O Downloading artifacts for mirror-packages (15637875528)... 2026-07-31T04:22:24.857127Z 01E Direct download from storage.googleapis.com  correlation_id=0efdfae5dd3f47f7885b1b883ba88bde id=15637875528 status=302 token=71_9iBgrg 2026-07-31T04:22:25.435866Z 01E Downloading artifacts from coordinator... ok  correlation_id=0efdfae5dd3f47f7885b1b883ba88bde id=15637875528 status=302 token=71_9iBgrg 2026-07-31T04:22:25.945797Z 01O Downloading artifacts for build (15637875529)... 2026-07-31T04:22:26.151728Z 01E Direct download from storage.googleapis.com  correlation_id=30966a10993c4eed92dea100bc2496f2 id=15637875529 status=302 token=71_9iBgrg 2026-07-31T04:22:26.360225Z 01E Downloading artifacts from coordinator... ok  correlation_id=30966a10993c4eed92dea100bc2496f2 id=15637875529 status=302 token=71_9iBgrg 2026-07-31T04:22:26.989433Z 00O section_end:1785471746:download_artifacts  2026-07-31T04:22:26.989821Z 00O+section_start:1785471746:step_script  2026-07-31T04:22:26.989831Z 00O+Executing "step_script" stage of the job script 2026-07-31T04:22:26.989844Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san 2026-07-31T04:22:26.990679Z 00O Using docker image sha256:d181cdd3cb74d0eb7cd2425feb6114cdb0cd30f18b4fbfa8781088fbc9fa85f6 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:38d509a73b7c3ed97dbaf608566c8c0403558e6284b80985a1d297d4fa7b1141 ... 2026-07-31T04:22:27.311042Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-07-31T04:22:27.319723Z 01O $ mkdir -p ~/.R 2026-07-31T04:22:27.321046Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-07-31T04:22:27.992337Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-07-31T04:22:27.992347Z 01E 2026-07-31T04:26:22.002209Z 01E Updating HTML index of packages in '.Library' 2026-07-31T04:26:22.004431Z 01E Making 'packages.html' ... done 2026-07-31T04:26:22.044104Z 01O $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-07-31T04:26:23.699719Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-07-31T04:26:23.700397Z 01O * using R Under development (unstable) (2026-07-29 r90317) 2026-07-31T04:26:23.701121Z 01O * using platform: x86_64-pc-linux-gnu 2026-07-31T04:26:23.701723Z 01O * R was compiled by 2026-07-31T04:26:23.702231Z 01O Debian clang version 21.1.8 (7+b4) 2026-07-31T04:26:23.702232Z 01O GNU Fortran (Debian 15.3.0-2) 15.3.0 2026-07-31T04:26:23.702944Z 01O * running under: Debian GNU/Linux forky/sid 2026-07-31T04:26:23.703589Z 01O * using session charset: UTF-8 2026-07-31T04:26:23.705533Z 01O * current time: 2026-07-31 04:26:23 UTC 2026-07-31T04:26:26.386697Z 01O * using option ‘--no-manual’ 2026-07-31T04:26:26.387869Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-07-31T04:26:26.396937Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-07-31T04:26:26.397686Z 01O * package encoding: UTF-8 2026-07-31T04:26:26.398422Z 01O * checking package namespace information ... OK 2026-07-31T04:26:26.427775Z 01O * checking package dependencies ... OK 2026-07-31T04:26:29.016686Z 01O * checking if this is a source package ... OK 2026-07-31T04:26:29.022671Z 01O * checking if there is a namespace ... OK 2026-07-31T04:26:29.029375Z 01O * checking for .dll and .exe files ... OK 2026-07-31T04:26:29.030948Z 01O * checking for hidden files and directories ... OK 2026-07-31T04:26:29.035724Z 01O * checking for portable file names ... OK 2026-07-31T04:26:29.049679Z 01O * checking for sufficient/correct file permissions ... OK 2026-07-31T04:26:29.053516Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-07-31T04:27:30.011645Z 01O * used C compiler: ‘Debian clang version 21.1.8 (7+b4)’ 2026-07-31T04:27:30.012464Z 01O * checking installed package size ... INFO 2026-07-31T04:27:30.018249Z 01O installed size is 11.0Mb 2026-07-31T04:27:30.020283Z 01O sub-directories of 1Mb or more: 2026-07-31T04:27:30.021807Z 01O doc 1.1Mb 2026-07-31T04:27:30.021808Z 01O libs 4.6Mb 2026-07-31T04:27:30.021808Z 01O po 1.7Mb 2026-07-31T04:27:30.021809Z 01O tests 2.2Mb 2026-07-31T04:27:30.022425Z 01O * checking package directory ... OK 2026-07-31T04:27:30.023673Z 01O * checking ‘build’ directory ... OK 2026-07-31T04:27:30.026156Z 01O * checking DESCRIPTION meta-information ... OK 2026-07-31T04:27:32.622017Z 01O * checking top-level files ... OK 2026-07-31T04:27:32.624125Z 01O * checking for left-over files ... OK 2026-07-31T04:27:32.629717Z 01O * checking index information ... OK 2026-07-31T04:27:33.286524Z 01O * checking package subdirectories ... OK 2026-07-31T04:27:34.602483Z 01O * checking code files for non-ASCII characters ... OK 2026-07-31T04:27:34.769509Z 01O * checking R files for syntax errors ... OK 2026-07-31T04:27:35.042040Z 01O * checking whether the package can be loaded ... OK 2026-07-31T04:27:35.718815Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-07-31T04:27:36.259402Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-07-31T04:27:36.809496Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-07-31T04:27:37.372500Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-07-31T04:27:38.077420Z 01O * checking loading without being on the library search path ... OK 2026-07-31T04:27:39.483077Z 01O * checking whether startup messages can be suppressed ... OK 2026-07-31T04:27:40.195943Z 01O * checking dependencies in R code ... OK 2026-07-31T04:27:43.155090Z 01O * checking S3 generic/method consistency ... OK 2026-07-31T04:27:44.357305Z 01O * checking replacement functions ... OK 2026-07-31T04:27:44.977746Z 01O * checking foreign function calls ... OK 2026-07-31T04:27:47.978344Z 01O * checking R code for possible problems ... OK 2026-07-31T04:28:37.893282Z 01O * checking Rd files ... OK 2026-07-31T04:28:40.443897Z 01O * checking Rd metadata ... OK 2026-07-31T04:28:40.588568Z 01O * checking Rd cross-references ... OK 2026-07-31T04:28:41.708627Z 01O * checking for missing documentation entries ... OK 2026-07-31T04:28:42.509815Z 01O * checking for code/documentation mismatches ... OK 2026-07-31T04:28:45.922072Z 01O * checking Rd \usage sections ... OK 2026-07-31T04:28:49.080556Z 01O * checking Rd contents ... OK 2026-07-31T04:28:50.836976Z 01O * checking for unstated dependencies in examples ... OK 2026-07-31T04:28:52.456992Z 01O * checking line endings in shell scripts ... OK 2026-07-31T04:28:52.458576Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-07-31T04:28:52.539775Z 01O * checking line endings in Makefiles ... OK 2026-07-31T04:28:52.541311Z 01O * checking compilation flags in Makevars ... OK 2026-07-31T04:28:52.697525Z 01O * checking for GNU extensions in Makefiles ... OK 2026-07-31T04:28:52.698674Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-07-31T04:28:52.702387Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-07-31T04:28:52.715633Z 01O * checking compiled code ... OK 2026-07-31T04:28:52.956782Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-07-31T04:28:53.716694Z 01O * checking files in ‘vignettes’ ... OK 2026-07-31T04:28:54.472984Z 01O * checking examples ... OK 2026-07-31T04:29:03.109837Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-07-31T04:29:03.334227Z 01O * checking tests ... 2026-07-31T04:29:03.769118Z 01O Running ‘autoprint.R’ 2026-07-31T04:29:04.575948Z 01O Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-07-31T04:29:04.592007Z 01O Running ‘froll.R’ 2026-07-31T04:59:16.548753Z 01O Running ‘litedown.R’ 2026-07-31T04:59:17.551785Z 01O Running ‘main.R’ 2026-07-31T05:01:40.476647Z 01O Running ‘mergelist.R’ 2026-07-31T05:01:46.407857Z 01O Running ‘nafill.R’ 2026-07-31T05:01:48.115073Z 01O Running ‘optimize.R’ 2026-07-31T05:01:52.891632Z 01O Running ‘other.R’ 2026-07-31T05:01:53.593424Z 01O Running ‘programming.R’ 2026-07-31T05:01:55.493047Z 01O Running ‘S4.R’ 2026-07-31T05:01:56.587687Z 01O Running ‘types.R’ 2026-07-31T05:01:57.489419Z 01O OK 2026-07-31T05:01:57.859318Z 01O * checking for unstated dependencies in vignettes ... OK 2026-07-31T05:01:58.853747Z 01O * checking package vignettes ... OK 2026-07-31T05:02:00.043700Z 01O * checking re-building of vignette outputs ... OK 2026-07-31T05:03:07.494361Z 01O * DONE 2026-07-31T05:03:07.495388Z 01E 2026-07-31T05:03:07.495655Z 01O Status: OK 2026-07-31T05:03:07.496099Z 01E 2026-07-31T05:03:07.939108Z 00O section_end:1785474187:step_script  2026-07-31T05:03:07.939500Z 00O+section_start:1785474187:after_script  2026-07-31T05:03:07.939506Z 00O+Running after_script 2026-07-31T05:03:08.259855Z 01O Running after script... 2026-07-31T05:03:08.259882Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-07-31T05:03:08.260891Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-07-31T05:03:08.260936Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-07-31T05:03:08.261071Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-07-31T05:03:08.261130Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-07-31T05:03:08.415535Z 00O section_end:1785474188:after_script  2026-07-31T05:03:08.416216Z 00O+section_start:1785474188:upload_artifacts_on_success  2026-07-31T05:03:08.416222Z 00O+Uploading artifacts for successful job 2026-07-31T05:03:08.773045Z 01O Uploading artifacts... 2026-07-31T05:03:08.827682Z 01E bus/test-lin-dev-clang-san: found 709 matching artifact files and directories 2026-07-31T05:03:11.287872Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=818a4858e3dc4a90967c8b9f97d698f8 id=15637875536 status=201 token=71_9iBgrg 2026-07-31T05:03:11.456230Z 00O section_end:1785474191:upload_artifacts_on_success  2026-07-31T05:03:11.456320Z 00O+section_start:1785474191:cleanup_file_variables  2026-07-31T05:03:11.456339Z 00O+Cleaning up project directory and file based variables 2026-07-31T05:03:11.936833Z 00O section_end:1785474191:cleanup_file_variables  2026-07-31T05:03:11.974286Z 00O Job succeeded