2026-10-30T04:20:37.935361Z 00O Running with gitlab-runner 19.6.0~pre.2364.gcc7d9535 (cc7d9535)
2026-10-30T04:20:37.935376Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_o57eP3OqiQsl
2026-10-30T04:20:37.935377Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-30T04:20:37.935384Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-30T04:20:37.935407Z 00O Resolving secrets
2026-10-30T04:20:37.935540Z 00O section_start:1793334037:prepare_executor

2026-10-30T04:20:37.935543Z 00O+Preparing the "docker+machine" executor
2026-10-30T04:20:38.005742Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ...
2026-10-30T04:20:38.005780Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:38.005788Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:38.006540Z 00O Pulling docker image us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 ...
2026-10-30T04:20:39.090668Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:40.639444Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:40.639456Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:40.640396Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:40.640405Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san
2026-10-30T04:20:40.641113Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-30T04:20:40.641118Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ...
2026-10-30T04:20:54.099779Z 00O Using docker image sha256:3996eb3c27d78b83af30c0ca4fdd5166805b56b2f623cafa8a6a129306fb0218 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:3fb0fec96a08cb0897c4c625ef0833d9682826e2bce3a014a7c847d9c420711d ...
2026-10-30T04:20:54.099857Z 00O section_end:1793334054:prepare_executor

2026-10-30T04:20:54.099949Z 00O+section_start:1793334054:prepare_script

2026-10-30T04:20:54.099952Z 00O+Preparing environment
2026-10-30T04:20:54.099983Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:54.099992Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:54.101004Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:54.101013Z 00O Using effective pull policy of [always] for container sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20
2026-10-30T04:21:05.088134Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1793333973-be09caaf...
2026-10-30T04:21:05.090629Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-30T04:21:05.215588Z 00O section_end:1793334065:prepare_script

2026-10-30T04:21:05.216004Z 00O+section_start:1793334065:get_sources

2026-10-30T04:21:05.216009Z 00O+Getting source from Git repository
2026-10-30T04:21:05.485245Z 01O Gitaly correlation ID: 0b9c8430f10e4ae6b717e212ffef36c0
2026-10-30T04:21:05.489505Z 01O Fetching changes...
2026-10-30T04:21:05.492222Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-30T04:21:05.494096Z 01O Created fresh repository.
2026-10-30T04:21:10.000590Z 01O Checking out 086c6466 as detached HEAD (ref is master)...
2026-10-30T04:21:10.141733Z 01O 
2026-10-30T04:21:10.141737Z 01O Skipping Git submodules setup
2026-10-30T04:21:10.141739Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-30T04:21:10.319507Z 00O section_end:1793334070:get_sources

2026-10-30T04:21:10.319992Z 00O+section_start:1793334070:download_artifacts

2026-10-30T04:21:10.319995Z 00O+Downloading artifacts
2026-10-30T04:21:10.611981Z 01O Downloading artifacts for build (17597456896)...
2026-10-30T04:21:10.798705Z 01E Direct download from storage.googleapis.com         correlation_id=933ec9f6d3b84eefb0bfdab65c2591b0 id=17597456896 status=302 token=74_UszXTR
2026-10-30T04:21:11.038399Z 01E Downloading artifacts from coordinator... ok        correlation_id=933ec9f6d3b84eefb0bfdab65c2591b0 id=17597456896 status=302 token=74_UszXTR
2026-10-30T04:21:11.046085Z 01O Downloading artifacts for mirror-packages (17597456894)...
2026-10-30T04:21:11.234214Z 01E Direct download from storage.googleapis.com         correlation_id=bba7e4b6e18948e1a006c7d0694a26f7 id=17597456894 status=302 token=74_UszXTR
2026-10-30T04:21:11.693199Z 01E Downloading artifacts from coordinator... ok        correlation_id=bba7e4b6e18948e1a006c7d0694a26f7 id=17597456894 status=302 token=74_UszXTR
2026-10-30T04:21:12.774604Z 00O section_end:1793334072:download_artifacts

2026-10-30T04:21:12.774922Z 00O+section_start:1793334072:step_script

2026-10-30T04:21:12.774928Z 00O+Executing "step_script" stage of the job script
2026-10-30T04:21:12.774938Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san
2026-10-30T04:21:12.775771Z 00O Using docker image sha256:3996eb3c27d78b83af30c0ca4fdd5166805b56b2f623cafa8a6a129306fb0218 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:3fb0fec96a08cb0897c4c625ef0833d9682826e2bce3a014a7c847d9c420711d ...
2026-10-30T04:21:13.057752Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-30T04:21:13.063062Z 01O $ mkdir -p ~/.R
2026-10-30T04:21:13.063924Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-10-30T04:21:13.622252Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-10-30T04:21:13.622259Z 01E 
2026-10-30T04:24:04.882714Z 01E Updating HTML index of packages in '.Library'
2026-10-30T04:24:04.885298Z 01E Making 'packages.html' ... done
2026-10-30T04:24:04.913500Z 01O $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-10-30T04:24:06.157778Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-10-30T04:24:06.158157Z 01O * using R Under development (unstable) (2026-10-28 r90783)
2026-10-30T04:24:06.158615Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-30T04:24:06.159145Z 01O * R was compiled by
2026-10-30T04:24:06.159409Z 01O     Debian clang version 21.1.8 (13)
2026-10-30T04:24:06.159410Z 01O     GNU Fortran (Debian 16.2.0-3) 16.2.0
2026-10-30T04:24:06.159898Z 01O * running under: Debian GNU/Linux forky/sid
2026-10-30T04:24:06.160331Z 01O * using session charset: UTF-8
2026-10-30T04:24:06.161975Z 01O * current time: 2026-10-30 04:24:06 UTC
2026-10-30T04:24:08.041533Z 01O * using option ‘--no-manual’
2026-10-30T04:24:08.042611Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-10-30T04:24:08.050353Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-10-30T04:24:08.050821Z 01O * package encoding: UTF-8
2026-10-30T04:24:08.051377Z 01O * checking package namespace information ... OK
2026-10-30T04:24:08.079927Z 01O * checking package dependencies ... OK
2026-10-30T04:24:09.996340Z 01O * checking if this is a source package ... OK
2026-10-30T04:24:10.000591Z 01O * checking if there is a namespace ... OK
2026-10-30T04:24:10.005721Z 01O * checking for .dll and .exe files ... OK
2026-10-30T04:24:10.006876Z 01O * checking for hidden files and directories ... OK
2026-10-30T04:24:10.009690Z 01O * checking for portable file names ... OK
2026-10-30T04:24:10.019622Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-30T04:24:10.021921Z 01O * checking whether package ‘data.table’ can be installed ... OK
2026-10-30T04:24:54.195985Z 01O * used C compiler: ‘Debian clang version 21.1.8 (13)’
2026-10-30T04:24:54.196945Z 01O * checking installed package size ... INFO
2026-10-30T04:24:54.202362Z 01O   installed size is 11.1Mb
2026-10-30T04:24:54.204446Z 01O   sub-directories of 1Mb or more:
2026-10-30T04:24:54.206110Z 01O     doc     1.1Mb
2026-10-30T04:24:54.206112Z 01O     libs    4.7Mb
2026-10-30T04:24:54.206113Z 01O     po      1.7Mb
2026-10-30T04:24:54.206114Z 01O     tests   2.2Mb
2026-10-30T04:24:54.206791Z 01O * checking package directory ... OK
2026-10-30T04:24:54.207747Z 01O * checking ‘build’ directory ... OK
2026-10-30T04:24:54.209786Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-30T04:24:56.321208Z 01O * checking top-level files ... OK
2026-10-30T04:24:56.323130Z 01O * checking for left-over files ... OK
2026-10-30T04:24:56.326763Z 01O * checking index information ... OK
2026-10-30T04:24:56.873285Z 01O * checking package subdirectories ... OK
2026-10-30T04:24:57.909804Z 01O * checking code files for non-ASCII characters ... OK
2026-10-30T04:24:58.031256Z 01O * checking R files for syntax errors ... OK
2026-10-30T04:24:58.249597Z 01O * checking whether the package can be loaded ... OK
2026-10-30T04:24:58.821974Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-30T04:24:59.261024Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-30T04:24:59.713597Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-30T04:25:00.156193Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-30T04:25:00.746916Z 01O * checking loading without being on the library search path ... OK
2026-10-30T04:25:01.898804Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-30T04:25:02.464464Z 01O * checking dependencies in R code ... OK
2026-10-30T04:25:04.508260Z 01O * checking S3 generic/method consistency ... OK
2026-10-30T04:25:05.515987Z 01O * checking replacement functions ... OK
2026-10-30T04:25:06.040678Z 01O * checking foreign function calls ... OK
2026-10-30T04:25:08.113723Z 01O * checking R code for possible problems ... OK
2026-10-30T04:25:48.283866Z 01O * checking Rd files ... OK
2026-10-30T04:25:50.162171Z 01O * checking Rd metadata ... OK
2026-10-30T04:25:50.277688Z 01O * checking Rd cross-references ... OK
2026-10-30T04:25:51.207677Z 01O * checking for missing documentation entries ... OK
2026-10-30T04:25:51.885081Z 01O * checking for code/documentation mismatches ... OK
2026-10-30T04:25:54.817691Z 01O * checking Rd \usage sections ... OK
2026-10-30T04:25:57.653083Z 01O * checking Rd contents ... OK
2026-10-30T04:25:59.065721Z 01O * checking for unstated dependencies in examples ... OK
2026-10-30T04:26:00.359956Z 01O * checking line endings in shell scripts ... OK
2026-10-30T04:26:00.361448Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-30T04:26:00.403621Z 01O * checking line endings in Makefiles ... OK
2026-10-30T04:26:00.404705Z 01O * checking compilation flags in Makevars ... OK
2026-10-30T04:26:00.542915Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-30T04:26:00.544650Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-30T04:26:00.547723Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-30T04:26:00.566494Z 01O * checking compiled code ... OK
2026-10-30T04:26:03.691632Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-10-30T04:26:04.255441Z 01O * checking files in ‘vignettes’ ... OK
2026-10-30T04:26:04.890710Z 01O * checking examples ... OK
2026-10-30T04:26:12.075627Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-10-30T04:26:12.249159Z 01O * checking tests ...
2026-10-30T04:26:12.613499Z 01O   Running ‘autoprint.R’
2026-10-30T04:26:13.308486Z 01O   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-10-30T04:26:13.323883Z 01O   Running ‘froll.R’
2026-10-30T04:52:08.404092Z 01O   Running ‘litedown.R’
2026-10-30T04:52:09.393948Z 01O   Running ‘main.R’
2026-10-30T04:54:32.548864Z 01O   Running ‘mergelist.R’
2026-10-30T04:54:38.037923Z 01O   Running ‘nafill.R’
2026-10-30T04:54:39.762555Z 01O   Running ‘optimize.R’
2026-10-30T04:55:05.336805Z 01O   Running ‘other.R’
2026-10-30T04:55:06.033634Z 01O   Running ‘programming.R’
2026-10-30T04:55:07.919208Z 01O   Running ‘S4.R’
2026-10-30T04:55:08.961054Z 01O   Running ‘self.R’
2026-10-30T04:55:09.728022Z 01O   Running ‘types.R’
2026-10-30T04:55:10.590974Z 01O  OK
2026-10-30T04:55:11.312020Z 01O * checking for unstated dependencies in vignettes ... OK
2026-10-30T04:55:12.285213Z 01O * checking package vignettes ... OK
2026-10-30T04:55:15.126354Z 01O * checking re-building of vignette outputs ... OK
2026-10-30T04:56:19.020608Z 01O * DONE
2026-10-30T04:56:19.022066Z 01E 
2026-10-30T04:56:19.022451Z 01O Status: OK
2026-10-30T04:56:19.022731Z 01E 
2026-10-30T04:56:19.433545Z 00O section_end:1793336179:step_script

2026-10-30T04:56:19.433808Z 00O+section_start:1793336179:after_script

2026-10-30T04:56:19.433813Z 00O+Running after_script
2026-10-30T04:56:19.725976Z 01O Running after script...
2026-10-30T04:56:19.725992Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-30T04:56:19.726876Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-30T04:56:19.726885Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-30T04:56:19.726911Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-30T04:56:19.726961Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-30T04:56:19.875192Z 00O section_end:1793336179:after_script

2026-10-30T04:56:19.875663Z 00O+section_start:1793336179:upload_artifacts_on_success

2026-10-30T04:56:19.875668Z 00O+Uploading artifacts for successful job
2026-10-30T04:56:20.205793Z 01O Uploading artifacts...
2026-10-30T04:56:20.254209Z 01E bus/test-lin-dev-clang-san: found 714 matching artifact files and directories 
2026-10-30T04:56:21.546558Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=83ffb9579b0444af9f9f96ffe405fc69 id=17597456903 status=201 token=74_UszXTR
2026-10-30T04:56:21.694763Z 00O section_end:1793336181:upload_artifacts_on_success

2026-10-30T04:56:21.695065Z 00O+section_start:1793336181:cleanup_file_variables

2026-10-30T04:56:21.695069Z 00O+Cleaning up project directory and file based variables
2026-10-30T04:56:22.147142Z 00O section_end:1793336182:cleanup_file_variables

2026-10-30T04:56:22.178177Z 00O Job succeeded