2026-03-17T04:21:34.715323Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90) 2026-03-17T04:21:34.715336Z 00O  on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586 2026-03-17T04:21:34.715342Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true 2026-03-17T04:21:34.715359Z 00O Resolving secrets 2026-03-17T04:21:34.715479Z 00O section_start:1773721294:prepare_executor 2026-03-17T04:21:34.715480Z 00O+Preparing the "docker+machine" executor 2026-03-17T04:21:34.848988Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... 2026-03-17T04:21:38.833034Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san 2026-03-17T04:21:38.833588Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-03-17T04:21:38.833598Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san ... 2026-03-17T04:21:59.423484Z 00O Using docker image sha256:a6069c6a8cfd5222bc80d9ea1be0dbfaa242a7ae6dd4850130b55e4d42e9b647 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:da29342a92bc24d2b0ecd03517853b634be4d438c901f6225ed599c64353d61b ... 2026-03-17T04:21:59.423569Z 00O section_end:1773721319:prepare_executor 2026-03-17T04:21:59.423570Z 00O+section_start:1773721319:prepare_script 2026-03-17T04:21:59.423654Z 00O+Preparing environment 2026-03-17T04:21:59.424685Z 00O Using effective pull policy of [always] for container sha256:90eac96ea75ef11ac30a18c14572bf52cb8fd67aa70e4b748be6dabb49c53397 2026-03-17T04:22:07.860372Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1773721217-fe001da6... 2026-03-17T04:22:08.034518Z 00O section_end:1773721328:prepare_script 2026-03-17T04:22:08.034527Z 00O+section_start:1773721328:get_sources 2026-03-17T04:22:08.035052Z 00O+Getting source from Git repository 2026-03-17T04:22:08.402792Z 01O Gitaly correlation ID: 393127c996b044eb86cb92c13e50dc62 2026-03-17T04:22:08.409519Z 01O Fetching changes... 2026-03-17T04:22:08.412758Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-03-17T04:22:08.415162Z 01O Created fresh repository. 2026-03-17T04:22:13.990637Z 01O Checking out 7db13b99 as detached HEAD (ref is master)... 2026-03-17T04:22:14.183693Z 01O 2026-03-17T04:22:14.183701Z 01O Skipping Git submodules setup 2026-03-17T04:22:14.183703Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-03-17T04:22:14.416758Z 00O section_end:1773721334:get_sources 2026-03-17T04:22:14.416765Z 00O+section_start:1773721334:download_artifacts 2026-03-17T04:22:14.417484Z 00O+Downloading artifacts 2026-03-17T04:22:14.837943Z 01O Downloading artifacts for mirror-packages (13520321980)... 2026-03-17T04:22:15.904671Z 01E Downloading artifacts from coordinator... ok  correlation_id=13077c88cb5a4db3a0a2a9a7b9659321 host=storage.googleapis.com id=13520321980 responseStatus=200 OK token=6d_y4_n2F 2026-03-17T04:22:16.130649Z 01O Downloading artifacts for build (13520321982)... 2026-03-17T04:22:16.456540Z 01E Downloading artifacts from coordinator... ok  correlation_id=c2070cd802ee4ae98880bd62073f7351 host=storage.googleapis.com id=13520321982 responseStatus=200 OK token=6d_y4_n2F 2026-03-17T04:22:17.153775Z 00O section_end:1773721337:download_artifacts 2026-03-17T04:22:17.153785Z 00O+section_start:1773721337:step_script 2026-03-17T04:22:17.154154Z 00O+Executing "step_script" stage of the job script 2026-03-17T04:22:17.154174Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san 2026-03-17T04:22:17.155096Z 00O Using docker image sha256:a6069c6a8cfd5222bc80d9ea1be0dbfaa242a7ae6dd4850130b55e4d42e9b647 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-clang-san@sha256:da29342a92bc24d2b0ecd03517853b634be4d438c901f6225ed599c64353d61b ... 2026-03-17T04:22:17.522680Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-03-17T04:22:17.532148Z 01O $ mkdir -p ~/.R 2026-03-17T04:22:17.533737Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-03-17T04:22:18.259650Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-03-17T04:22:18.259663Z 01E 2026-03-17T04:26:14.586870Z 01E Updating HTML index of packages in '.Library' 2026-03-17T04:26:14.588510Z 01E Making 'packages.html' ... done 2026-03-17T04:26:14.629033Z 01O $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-03-17T04:26:16.304992Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-03-17T04:26:16.305754Z 01O * using R Under development (unstable) (2026-03-15 r89634) 2026-03-17T04:26:16.306371Z 01O * using platform: x86_64-pc-linux-gnu 2026-03-17T04:26:16.307121Z 01O * R was compiled by 2026-03-17T04:26:16.307565Z 01O Debian clang version 21.1.8 (3+b1) 2026-03-17T04:26:16.307566Z 01O GNU Fortran (Debian 15.2.0-14) 15.2.0 2026-03-17T04:26:16.308324Z 01O * running under: Debian GNU/Linux forky/sid 2026-03-17T04:26:16.309065Z 01O * using session charset: UTF-8 2026-03-17T04:26:16.310919Z 01O * current time: 2026-03-17 04:26:16 UTC 2026-03-17T04:26:19.027519Z 01O * using option ‘--no-manual’ 2026-03-17T04:26:19.028724Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-03-17T04:26:19.037450Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-03-17T04:26:19.038283Z 01O * package encoding: UTF-8 2026-03-17T04:26:19.039131Z 01O * checking package namespace information ... OK 2026-03-17T04:26:19.069312Z 01O * checking package dependencies ... OK 2026-03-17T04:26:21.556302Z 01O * checking if this is a source package ... OK 2026-03-17T04:26:21.562390Z 01O * checking if there is a namespace ... OK 2026-03-17T04:26:21.569164Z 01O * checking for .dll and .exe files ... OK 2026-03-17T04:26:21.570938Z 01O * checking for hidden files and directories ... OK 2026-03-17T04:26:21.575960Z 01O * checking for portable file names ... OK 2026-03-17T04:26:21.590063Z 01O * checking for sufficient/correct file permissions ... OK 2026-03-17T04:26:21.593981Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-03-17T04:27:22.457260Z 01O * used C compiler: ‘Debian clang version 21.1.8 (3+b1)’ 2026-03-17T04:27:22.458438Z 01O * checking installed package size ... INFO 2026-03-17T04:27:22.464319Z 01O installed size is 10.9Mb 2026-03-17T04:27:22.466273Z 01O sub-directories of 1Mb or more: 2026-03-17T04:27:22.467756Z 01O doc 1.1Mb 2026-03-17T04:27:22.467757Z 01O libs 4.6Mb 2026-03-17T04:27:22.467757Z 01O po 1.7Mb 2026-03-17T04:27:22.467758Z 01O tests 2.2Mb 2026-03-17T04:27:22.468392Z 01O * checking package directory ... OK 2026-03-17T04:27:22.469735Z 01O * checking ‘build’ directory ... OK 2026-03-17T04:27:22.472150Z 01O * checking DESCRIPTION meta-information ... OK 2026-03-17T04:27:25.136853Z 01O * checking top-level files ... OK 2026-03-17T04:27:25.139043Z 01O * checking for left-over files ... OK 2026-03-17T04:27:25.144139Z 01O * checking index information ... OK 2026-03-17T04:27:25.803051Z 01O * checking package subdirectories ... OK 2026-03-17T04:27:27.132993Z 01O * checking code files for non-ASCII characters ... OK 2026-03-17T04:27:27.301480Z 01O * checking R files for syntax errors ... OK 2026-03-17T04:27:27.567014Z 01O * checking whether the package can be loaded ... OK 2026-03-17T04:27:28.266643Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-03-17T04:27:28.835192Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-03-17T04:27:29.387001Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-03-17T04:27:29.952156Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-03-17T04:27:30.675443Z 01O * checking loading without being on the library search path ... OK 2026-03-17T04:27:32.080152Z 01O * checking whether startup messages can be suppressed ... OK 2026-03-17T04:27:32.798946Z 01O * checking dependencies in R code ... OK 2026-03-17T04:27:35.798136Z 01O * checking S3 generic/method consistency ... OK 2026-03-17T04:27:37.041679Z 01O * checking replacement functions ... OK 2026-03-17T04:27:37.686569Z 01O * checking foreign function calls ... OK 2026-03-17T04:27:40.777169Z 01O * checking R code for possible problems ... OK 2026-03-17T04:28:26.542449Z 01O * checking Rd files ... OK 2026-03-17T04:28:29.101661Z 01O * checking Rd metadata ... OK 2026-03-17T04:28:29.246147Z 01O * checking Rd cross-references ... OK 2026-03-17T04:28:30.366878Z 01O * checking for missing documentation entries ... OK 2026-03-17T04:28:31.197548Z 01O * checking for code/documentation mismatches ... OK 2026-03-17T04:28:34.680613Z 01O * checking Rd \usage sections ... OK 2026-03-17T04:28:37.914991Z 01O * checking Rd contents ... OK 2026-03-17T04:28:39.703679Z 01O * checking for unstated dependencies in examples ... OK 2026-03-17T04:28:41.434655Z 01O * checking line endings in shell scripts ... OK 2026-03-17T04:28:41.436284Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-03-17T04:28:41.493863Z 01O * checking line endings in Makefiles ... OK 2026-03-17T04:28:41.495642Z 01O * checking compilation flags in Makevars ... OK 2026-03-17T04:28:41.655925Z 01O * checking for GNU extensions in Makefiles ... OK 2026-03-17T04:28:41.658545Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-03-17T04:28:41.662587Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-03-17T04:28:41.675857Z 01O * checking compiled code ... OK 2026-03-17T04:28:41.931533Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-03-17T04:28:42.697404Z 01O * checking files in ‘vignettes’ ... OK 2026-03-17T04:28:43.461529Z 01O * checking examples ... OK 2026-03-17T04:28:52.226486Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-03-17T04:28:52.459014Z 01O * checking tests ... 2026-03-17T04:28:52.928623Z 01O Running ‘autoprint.R’ 2026-03-17T04:28:53.760993Z 01O Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-03-17T04:28:53.778268Z 01O Running ‘froll.R’ 2026-03-17T04:59:34.523364Z 01O Running ‘litedown.R’ 2026-03-17T04:59:35.513400Z 01O Running ‘main.R’ 2026-03-17T05:01:53.231877Z 01O Running ‘mergelist.R’ 2026-03-17T05:01:58.942640Z 01O Running ‘nafill.R’ 2026-03-17T05:02:00.702857Z 01O Running ‘optimize.R’ 2026-03-17T05:02:05.386302Z 01O Running ‘other.R’ 2026-03-17T05:02:06.094565Z 01O Running ‘programming.R’ 2026-03-17T05:02:08.014915Z 01O Running ‘S4.R’ 2026-03-17T05:02:09.067450Z 01O Running ‘types.R’ 2026-03-17T05:02:09.928277Z 01O OK 2026-03-17T05:02:10.271952Z 01O * checking for unstated dependencies in vignettes ... OK 2026-03-17T05:02:11.255987Z 01O * checking package vignettes ... OK 2026-03-17T05:02:12.391348Z 01O * checking re-building of vignette outputs ... OK 2026-03-17T05:03:20.156069Z 01O * DONE 2026-03-17T05:03:20.157469Z 01E 2026-03-17T05:03:20.157680Z 01O Status: OK 2026-03-17T05:03:20.158321Z 01E 2026-03-17T05:03:20.592294Z 00O section_end:1773723800:step_script 2026-03-17T05:03:20.592300Z 00O+section_start:1773723800:after_script 2026-03-17T05:03:20.592724Z 00O+Running after_script 2026-03-17T05:03:20.913664Z 01O Running after script... 2026-03-17T05:03:20.913694Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-03-17T05:03:20.914729Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-03-17T05:03:20.914766Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-03-17T05:03:20.914946Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-03-17T05:03:20.915006Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-03-17T05:03:21.077048Z 00O section_end:1773723801:after_script 2026-03-17T05:03:21.077052Z 00O+section_start:1773723801:upload_artifacts_on_success 2026-03-17T05:03:21.077778Z 00O+Uploading artifacts for successful job 2026-03-17T05:03:21.496222Z 01O Uploading artifacts... 2026-03-17T05:03:21.575886Z 01E bus/test-lin-dev-clang-san: found 707 matching artifact files and directories 2026-03-17T05:03:24.019223Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=6b1cfae45d514da09a8790ecdfccb059 id=13520321993 responseStatus=201 Created token=6d_y4_n2F 2026-03-17T05:03:24.186824Z 00O section_end:1773723804:upload_artifacts_on_success 2026-03-17T05:03:24.186831Z 00O+section_start:1773723804:cleanup_file_variables 2026-03-17T05:03:24.186921Z 00O+Cleaning up project directory and file based variables 2026-03-17T05:03:24.665845Z 00O section_end:1773723804:cleanup_file_variables 2026-03-17T05:03:24.665854Z 00O+ 2026-03-17T05:03:24.706834Z 00O Job succeeded