2026-02-15T04:25:59.409939Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314) 2026-02-15T04:25:59.409951Z 00O  on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b 2026-02-15T04:25:59.409969Z 00O Resolving secrets 2026-02-15T04:25:59.410095Z 00O section_start:1771129559:prepare_executor 2026-02-15T04:25:59.410097Z 00O+Preparing the "docker+machine" executor 2026-02-15T04:25:59.542086Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san ... 2026-02-15T04:26:03.986001Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san 2026-02-15T04:26:03.986624Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-02-15T04:26:03.986631Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san ... 2026-02-15T04:26:24.089374Z 00O Using docker image sha256:fbcfa5bd430dd55da31e7ee760e489fc1d839087df89c3314a06011d039044e5 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san@sha256:f15f1c605602312695932ad86e5b3ce18e64eead3abe041ab2c5add645ad297b ... 2026-02-15T04:26:24.089447Z 00O section_end:1771129584:prepare_executor 2026-02-15T04:26:24.089449Z 00O+section_start:1771129584:prepare_script 2026-02-15T04:26:24.089525Z 00O+Preparing environment 2026-02-15T04:26:24.090629Z 00O Using effective pull policy of [always] for container sha256:26408015a9f83f5b21fda5f404072e78a931f0457b255e1d68ee51a0f7a49547 2026-02-15T04:26:31.511883Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1771129406-62a68f43... 2026-02-15T04:26:31.685256Z 00O section_end:1771129591:prepare_script 2026-02-15T04:26:31.685261Z 00O+section_start:1771129591:get_sources 2026-02-15T04:26:31.685749Z 00O+Getting source from Git repository 2026-02-15T04:26:32.081541Z 01O Gitaly correlation ID: e3b61b0b005c4d038348c6c91d8a2328 2026-02-15T04:26:32.087322Z 01O Fetching changes... 2026-02-15T04:26:32.090895Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-02-15T04:26:32.093429Z 01O Created fresh repository. 2026-02-15T04:26:37.748973Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)... 2026-02-15T04:26:37.951255Z 01O 2026-02-15T04:26:37.951260Z 01O Skipping Git submodules setup 2026-02-15T04:26:37.951261Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-02-15T04:26:38.197099Z 00O section_end:1771129598:get_sources 2026-02-15T04:26:38.197104Z 00O+section_start:1771129598:download_artifacts 2026-02-15T04:26:38.197802Z 00O+Downloading artifacts 2026-02-15T04:26:38.635632Z 01O Downloading artifacts for mirror-packages (13120362981)... 2026-02-15T04:26:39.782541Z 01E Downloading artifacts from coordinator... ok  correlation_id=30201f228a914c7589cbc8f18d931e7f host=storage.googleapis.com id=13120362981 responseStatus=200 OK token=6c_d8b7et 2026-02-15T04:26:40.021916Z 01O Downloading artifacts for build (13120362982)... 2026-02-15T04:26:40.325050Z 01E Downloading artifacts from coordinator... ok  correlation_id=cb970130bfe34dda869a63d1cc8fdf78 host=storage.googleapis.com id=13120362982 responseStatus=200 OK token=6c_d8b7et 2026-02-15T04:26:41.046230Z 00O section_end:1771129601:download_artifacts 2026-02-15T04:26:41.046239Z 00O+section_start:1771129601:step_script 2026-02-15T04:26:41.046687Z 00O+Executing "step_script" stage of the job script 2026-02-15T04:26:41.046706Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san 2026-02-15T04:26:41.047957Z 00O Using docker image sha256:fbcfa5bd430dd55da31e7ee760e489fc1d839087df89c3314a06011d039044e5 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-san@sha256:f15f1c605602312695932ad86e5b3ce18e64eead3abe041ab2c5add645ad297b ... 2026-02-15T04:26:41.432211Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-02-15T04:26:41.442434Z 01O $ mkdir -p ~/.R 2026-02-15T04:26:41.444092Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-02-15T04:26:42.186960Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-02-15T04:26:42.186971Z 01E 2026-02-15T04:31:21.403257Z 01E Updating HTML index of packages in '.Library' 2026-02-15T04:31:21.405756Z 01E Making 'packages.html' ... done 2026-02-15T04:31:21.463575Z 01O $ res1=0; ASAN_OPTIONS=detect_leaks=1 R CMD check --no-manual $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-02-15T04:31:23.214805Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-02-15T04:31:23.215533Z 01O * using R Under development (unstable) (2026-02-13 r89414) 2026-02-15T04:31:23.216343Z 01O * using platform: x86_64-pc-linux-gnu 2026-02-15T04:31:23.217165Z 01O * R was compiled by 2026-02-15T04:31:23.217747Z 01O gcc (Debian 15.2.0-12) 15.2.0 2026-02-15T04:31:23.217748Z 01O GNU Fortran (Debian 15.2.0-12) 15.2.0 2026-02-15T04:31:23.218505Z 01O * running under: Debian GNU/Linux forky/sid 2026-02-15T04:31:23.219278Z 01O * using session charset: UTF-8 2026-02-15T04:31:23.221349Z 01O * current time: 2026-02-15 04:31:23 UTC 2026-02-15T04:31:25.847309Z 01O * using option ‘--no-manual’ 2026-02-15T04:31:25.848682Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-02-15T04:31:25.857794Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-02-15T04:31:25.858663Z 01O * package encoding: UTF-8 2026-02-15T04:31:25.859551Z 01O * checking package namespace information ... OK 2026-02-15T04:31:25.891789Z 01O * checking package dependencies ... OK 2026-02-15T04:31:28.458911Z 01O * checking if this is a source package ... OK 2026-02-15T04:31:28.465754Z 01O * checking if there is a namespace ... OK 2026-02-15T04:31:28.497832Z 01O * checking for .dll and .exe files ... OK 2026-02-15T04:31:28.499634Z 01O * checking for hidden files and directories ... OK 2026-02-15T04:31:28.504988Z 01O * checking for portable file names ... OK 2026-02-15T04:31:28.520151Z 01O * checking for sufficient/correct file permissions ... OK 2026-02-15T04:31:28.524077Z 01O * checking whether package ‘data.table’ can be installed ... OK 2026-02-15T04:32:48.384476Z 01O * used C compiler: ‘gcc (Debian 15.2.0-12) 15.2.0’ 2026-02-15T04:32:48.385582Z 01O * checking installed package size ... INFO 2026-02-15T04:32:48.393104Z 01O installed size is 15.6Mb 2026-02-15T04:32:48.395086Z 01O sub-directories of 1Mb or more: 2026-02-15T04:32:48.396925Z 01O doc 1.1Mb 2026-02-15T04:32:48.396926Z 01O libs 9.2Mb 2026-02-15T04:32:48.396927Z 01O po 1.7Mb 2026-02-15T04:32:48.396927Z 01O tests 2.2Mb 2026-02-15T04:32:48.397782Z 01O * checking package directory ... OK 2026-02-15T04:32:48.399021Z 01O * checking ‘build’ directory ... OK 2026-02-15T04:32:48.401477Z 01O * checking DESCRIPTION meta-information ... OK 2026-02-15T04:32:51.246224Z 01O * checking top-level files ... OK 2026-02-15T04:32:51.248744Z 01O * checking for left-over files ... OK 2026-02-15T04:32:51.253865Z 01O * checking index information ... OK 2026-02-15T04:32:51.970680Z 01O * checking package subdirectories ... OK 2026-02-15T04:32:53.475544Z 01O * checking code files for non-ASCII characters ... OK 2026-02-15T04:32:53.678274Z 01O * checking R files for syntax errors ... OK 2026-02-15T04:32:54.026399Z 01O * checking whether the package can be loaded ... OK 2026-02-15T04:32:54.798271Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-02-15T04:32:55.418303Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-02-15T04:32:56.042392Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-02-15T04:32:56.662615Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-02-15T04:32:57.448240Z 01O * checking loading without being on the library search path ... OK 2026-02-15T04:32:58.975184Z 01O * checking whether startup messages can be suppressed ... OK 2026-02-15T04:32:59.720400Z 01O * checking dependencies in R code ... OK 2026-02-15T04:33:02.877405Z 01O * checking S3 generic/method consistency ... OK 2026-02-15T04:33:04.245717Z 01O * checking replacement functions ... OK 2026-02-15T04:33:04.982453Z 01O * checking foreign function calls ... OK 2026-02-15T04:33:08.063514Z 01O * checking R code for possible problems ... OK 2026-02-15T04:33:55.155492Z 01O * checking Rd files ... OK 2026-02-15T04:33:57.839667Z 01O * checking Rd metadata ... OK 2026-02-15T04:33:58.005425Z 01O * checking Rd cross-references ... OK 2026-02-15T04:33:59.167661Z 01O * checking for missing documentation entries ... OK 2026-02-15T04:34:00.048511Z 01O * checking for code/documentation mismatches ... OK 2026-02-15T04:34:03.955376Z 01O * checking Rd \usage sections ... OK 2026-02-15T04:34:07.490323Z 01O * checking Rd contents ... OK 2026-02-15T04:34:09.325919Z 01O * checking for unstated dependencies in examples ... OK 2026-02-15T04:34:11.089828Z 01O * checking line endings in shell scripts ... OK 2026-02-15T04:34:11.091470Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-02-15T04:34:11.152423Z 01O * checking line endings in Makefiles ... OK 2026-02-15T04:34:11.153966Z 01O * checking compilation flags in Makevars ... OK 2026-02-15T04:34:11.335689Z 01O * checking for GNU extensions in Makefiles ... OK 2026-02-15T04:34:11.338285Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-02-15T04:34:11.342770Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-02-15T04:34:11.356778Z 01O * checking compiled code ... OK 2026-02-15T04:34:11.607926Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-02-15T04:34:12.445881Z 01O * checking files in ‘vignettes’ ... OK 2026-02-15T04:34:13.287824Z 01O * checking examples ... OK 2026-02-15T04:34:22.774780Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-02-15T04:34:23.041313Z 01O * checking tests ... 2026-02-15T04:34:23.534489Z 01O Running ‘autoprint.R’ 2026-02-15T04:34:24.438277Z 01O Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-02-15T04:34:24.456705Z 01O Running ‘froll.R’ 2026-02-15T05:06:51.006684Z 01O Running ‘litedown.R’ 2026-02-15T05:06:52.117880Z 01O Running ‘main.R’ 2026-02-15T05:09:22.176796Z 01O Running ‘mergelist.R’ 2026-02-15T05:09:28.097545Z 01O Running ‘nafill.R’ 2026-02-15T05:09:29.784041Z 01O Running ‘optimize.R’ 2026-02-15T05:09:34.557346Z 01O Running ‘other.R’ 2026-02-15T05:09:35.270217Z 01O Running ‘programming.R’ 2026-02-15T05:09:37.215732Z 01O Running ‘S4.R’ 2026-02-15T05:09:38.312405Z 01O Running ‘types.R’ 2026-02-15T05:09:39.226862Z 01O OK 2026-02-15T05:09:39.566851Z 01O * checking for unstated dependencies in vignettes ... OK 2026-02-15T05:09:40.596770Z 01O * checking package vignettes ... OK 2026-02-15T05:09:41.695480Z 01O * checking re-building of vignette outputs ... OK 2026-02-15T05:11:03.192200Z 01O * DONE 2026-02-15T05:11:03.193838Z 01E 2026-02-15T05:11:03.194091Z 01O Status: OK 2026-02-15T05:11:03.194580Z 01E 2026-02-15T05:11:03.662857Z 00O section_end:1771132263:step_script 2026-02-15T05:11:03.662861Z 00O+section_start:1771132263:after_script 2026-02-15T05:11:03.663334Z 00O+Running after_script 2026-02-15T05:11:04.034364Z 01O Running after script... 2026-02-15T05:11:04.034384Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-02-15T05:11:04.035700Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-02-15T05:11:04.035701Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-02-15T05:11:04.035702Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-02-15T05:11:04.035841Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-02-15T05:11:04.212924Z 00O section_end:1771132264:after_script 2026-02-15T05:11:04.212927Z 00O+section_start:1771132264:upload_artifacts_on_success 2026-02-15T05:11:04.213782Z 00O+Uploading artifacts for successful job 2026-02-15T05:11:04.640586Z 01O Uploading artifacts... 2026-02-15T05:11:04.712906Z 01E bus/test-lin-dev-gcc-san: found 706 matching artifact files and directories 2026-02-15T05:11:08.199568Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=8a4d56d394b54bf6a3ddd6f023a508a8 id=13120363003 responseStatus=201 Created token=6c_d8b7et 2026-02-15T05:11:08.384911Z 00O section_end:1771132268:upload_artifacts_on_success 2026-02-15T05:11:08.384916Z 00O+section_start:1771132268:cleanup_file_variables 2026-02-15T05:11:08.385031Z 00O+Cleaning up project directory and file based variables 2026-02-15T05:11:08.916395Z 00O section_end:1771132268:cleanup_file_variables 2026-02-15T05:11:08.916400Z 00O+ 2026-02-15T05:11:08.962944Z 00O Job succeeded