2026-03-17T04:21:34.363959Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90) 2026-03-17T04:21:34.363973Z 00O  on blue-1.saas-linux-medium.runners-manager.gitlab.com/default 2QMMJaNnp, system ID: s_406404729ae4 2026-03-17T04:21:34.363978Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true 2026-03-17T04:21:34.364013Z 00O Resolving secrets 2026-03-17T04:21:34.364140Z 00O section_start:1773721294:prepare_executor 2026-03-17T04:21:34.364142Z 00O+Preparing the "docker+machine" executor 2026-03-17T04:21:34.499982Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ... 2026-03-17T04:21:38.857025Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict 2026-03-17T04:21:38.857878Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-03-17T04:21:38.857887Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ... 2026-03-17T04:21:54.182586Z 00O Using docker image sha256:c2fb260857fc0264ee3b1e436599dc5f7b57f98ef4ac2e895b2c5241e8471cd9 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:310fd86497f4bd3c632d65d7d3a63cdbac8dc9aa1348cbce621022a981f37673 ... 2026-03-17T04:21:54.182667Z 00O section_end:1773721314:prepare_executor 2026-03-17T04:21:54.182668Z 00O+section_start:1773721314:prepare_script 2026-03-17T04:21:54.182758Z 00O+Preparing environment 2026-03-17T04:21:54.183563Z 00O Using effective pull policy of [always] for container sha256:cf221a38aa94d3906449401ee786d410f00c635ad626a33abc7f7058ab17d9e2 2026-03-17T04:22:04.818189Z 01O Running on runner-2qmmjannp-project-3622566-concurrent-0 via runner-2qmmjannp-s-l-m-amd64-1773721178-c199ec53... 2026-03-17T04:22:04.996296Z 00O section_end:1773721324:prepare_script 2026-03-17T04:22:04.996302Z 00O+section_start:1773721324:get_sources 2026-03-17T04:22:04.996817Z 00O+Getting source from Git repository 2026-03-17T04:22:05.401159Z 01O Gitaly correlation ID: 80ca895fd00a49b7843a418c11b1c8f2 2026-03-17T04:22:05.409147Z 01O Fetching changes... 2026-03-17T04:22:05.412967Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-03-17T04:22:05.415554Z 01O Created fresh repository. 2026-03-17T04:22:11.288857Z 01O Checking out 7db13b99 as detached HEAD (ref is master)... 2026-03-17T04:22:11.482460Z 01O 2026-03-17T04:22:11.482469Z 01O Skipping Git submodules setup 2026-03-17T04:22:11.482470Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-03-17T04:22:11.719725Z 00O section_end:1773721331:get_sources 2026-03-17T04:22:11.719730Z 00O+section_start:1773721331:download_artifacts 2026-03-17T04:22:11.720467Z 00O+Downloading artifacts 2026-03-17T04:22:12.137168Z 01O Downloading artifacts for mirror-packages (13520321980)... 2026-03-17T04:22:13.126063Z 01E Downloading artifacts from coordinator... ok  correlation_id=28727b39fb2b4a67a10bad044ce17189 host=storage.googleapis.com id=13520321980 responseStatus=200 OK token=6d_xwZt6z 2026-03-17T04:22:13.352784Z 01O Downloading artifacts for build (13520321982)... 2026-03-17T04:22:13.673887Z 01E Downloading artifacts from coordinator... ok  correlation_id=c58dff6a3a8e4445b6677dc4ab8009ff host=storage.googleapis.com id=13520321982 responseStatus=200 OK token=6d_xwZt6z 2026-03-17T04:22:14.381538Z 00O section_end:1773721334:download_artifacts 2026-03-17T04:22:14.381547Z 00O+section_start:1773721334:step_script 2026-03-17T04:22:14.382003Z 00O+Executing "step_script" stage of the job script 2026-03-17T04:22:14.382023Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict 2026-03-17T04:22:14.382963Z 00O Using docker image sha256:c2fb260857fc0264ee3b1e436599dc5f7b57f98ef4ac2e895b2c5241e8471cd9 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:310fd86497f4bd3c632d65d7d3a63cdbac8dc9aa1348cbce621022a981f37673 ... 2026-03-17T04:22:14.774785Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-03-17T04:22:14.785070Z 01O $ mkdir -p ~/.R 2026-03-17T04:22:14.786613Z 01O $ echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars 2026-03-17T04:22:14.786812Z 01O $ echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars 2026-03-17T04:22:14.786815Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-03-17T04:22:15.141075Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-03-17T04:22:15.141086Z 01E 2026-03-17T04:24:35.154086Z 01E Updating HTML index of packages in '.Library' 2026-03-17T04:24:35.155107Z 01E Making 'packages.html' ... done 2026-03-17T04:24:35.175633Z 01O $ R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) 2026-03-17T04:24:36.464467Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-03-17T04:24:36.464635Z 01O * using R Under development (unstable) (2026-03-15 r89634) 2026-03-17T04:24:36.464981Z 01O * using platform: x86_64-pc-linux-gnu 2026-03-17T04:24:36.465386Z 01O * R was compiled by 2026-03-17T04:24:36.465569Z 01O gcc (Debian 15.2.0-14) 15.2.0 2026-03-17T04:24:36.465570Z 01O GNU Fortran (Debian 15.2.0-14) 15.2.0 2026-03-17T04:24:36.465844Z 01O * running under: Debian GNU/Linux forky/sid 2026-03-17T04:24:36.466225Z 01O * using session charset: UTF-8 2026-03-17T04:24:36.466930Z 01O * current time: 2026-03-17 04:24:36 UTC 2026-03-17T04:24:38.792701Z 01O * using option ‘--as-cran’ 2026-03-17T04:24:38.793045Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-03-17T04:24:38.796119Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-03-17T04:24:38.796370Z 01O * package encoding: UTF-8 2026-03-17T04:24:38.796741Z 01O * checking CRAN incoming feasibility ... OK 2026-03-17T04:24:40.179146Z 01O * checking package namespace information ... OK 2026-03-17T04:24:40.189960Z 01O * checking package dependencies ... OK 2026-03-17T04:24:41.493188Z 01O * checking if this is a source package ... OK 2026-03-17T04:24:41.496767Z 01O * checking if there is a namespace ... OK 2026-03-17T04:24:41.501748Z 01O * checking for .dll and .exe files ... OK 2026-03-17T04:24:41.502496Z 01O * checking for hidden files and directories ... OK 2026-03-17T04:24:41.505758Z 01O * checking for portable file names ... OK 2026-03-17T04:24:41.511283Z 01O * checking for sufficient/correct file permissions ... OK 2026-03-17T04:24:41.516728Z 01O * checking whether package ‘data.table’ can be installed ... [49s/34s] OK 2026-03-17T04:25:15.267398Z 01O * used C compiler: ‘gcc (Debian 15.2.0-14) 15.2.0’ 2026-03-17T04:25:15.267933Z 01O * checking installed package size ... INFO 2026-03-17T04:25:15.273067Z 01O installed size is 8.6Mb 2026-03-17T04:25:15.274274Z 01O sub-directories of 1Mb or more: 2026-03-17T04:25:15.275077Z 01O doc 1.1Mb 2026-03-17T04:25:15.275078Z 01O libs 2.2Mb 2026-03-17T04:25:15.275078Z 01O po 1.7Mb 2026-03-17T04:25:15.275079Z 01O tests 2.2Mb 2026-03-17T04:25:15.290115Z 01O * checking package directory ... OK 2026-03-17T04:25:15.290690Z 01O * checking for future file timestamps ... OK 2026-03-17T04:25:15.291653Z 01O * checking ‘build’ directory ... OK 2026-03-17T04:25:15.293002Z 01O * checking DESCRIPTION meta-information ... OK 2026-03-17T04:25:16.948613Z 01O * checking top-level files ... OK 2026-03-17T04:25:18.541477Z 01O * checking for left-over files ... OK 2026-03-17T04:25:18.545001Z 01O * checking index information ... OK 2026-03-17T04:25:18.781624Z 01O * checking package subdirectories ... OK 2026-03-17T04:25:19.353459Z 01O * checking code files for non-ASCII characters ... OK 2026-03-17T04:25:19.420654Z 01O * checking R files for syntax errors ... OK 2026-03-17T04:25:19.526662Z 01O * checking whether the package can be loaded ... OK 2026-03-17T04:25:19.873019Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-03-17T04:25:20.116044Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-03-17T04:25:20.367854Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-03-17T04:25:20.609961Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-03-17T04:25:20.960572Z 01O * checking loading without being on the library search path ... OK 2026-03-17T04:25:21.669464Z 01O * checking whether startup messages can be suppressed ... OK 2026-03-17T04:25:22.016218Z 01O * checking use of S3 registration ... OK 2026-03-17T04:25:22.054206Z 01O * checking dependencies in R code ... OK 2026-03-17T04:25:24.088085Z 01O * checking S3 generic/method consistency ... OK 2026-03-17T04:25:24.714849Z 01O * checking replacement functions ... OK 2026-03-17T04:25:24.979268Z 01O * checking foreign function calls ... OK 2026-03-17T04:25:27.399301Z 01O * checking R code for possible problems ... [48s/48s] OK 2026-03-17T04:26:15.721683Z 01O * checking Rd files ... OK 2026-03-17T04:26:17.468189Z 01O * checking Rd metadata ... OK 2026-03-17T04:26:17.526712Z 01O * checking Rd line widths ... OK 2026-03-17T04:26:18.125679Z 01O * checking Rd cross-references ... OK 2026-03-17T04:26:19.420152Z 01O * checking for missing documentation entries ... OK 2026-03-17T04:26:19.847237Z 01O * checking for code/documentation mismatches ... OK 2026-03-17T04:26:21.494674Z 01O * checking Rd \usage sections ... OK 2026-03-17T04:26:22.965967Z 01O * checking Rd contents ... OK 2026-03-17T04:26:24.193238Z 01O * checking for unstated dependencies in examples ... OK 2026-03-17T04:26:25.173905Z 01O * checking line endings in shell scripts ... OK 2026-03-17T04:26:25.174750Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-03-17T04:26:25.195308Z 01O * checking line endings in Makefiles ... OK 2026-03-17T04:26:25.196212Z 01O * checking compilation flags in Makevars ... OK 2026-03-17T04:26:25.274487Z 01O * checking for GNU extensions in Makefiles ... OK 2026-03-17T04:26:25.275745Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-03-17T04:26:25.277304Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-03-17T04:26:25.282100Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2026-03-17T04:26:25.289762Z 01O * checking pragmas in C/C++ headers and code ... OK 2026-03-17T04:26:25.313400Z 01O * checking compilation flags used ... OK 2026-03-17T04:26:25.315466Z 01O * checking compiled code ... OK 2026-03-17T04:26:25.419188Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-03-17T04:26:25.715948Z 01O * checking files in ‘vignettes’ ... OK 2026-03-17T04:26:27.096489Z 01O * checking examples ... OK 2026-03-17T04:26:36.847445Z 01O * checking examples with --run-donttest ... [12s/12s] OK 2026-03-17T04:26:49.932974Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-03-17T04:26:50.025741Z 01O * checking tests ... 2026-03-17T04:26:50.244535Z 01O Running ‘autoprint.R’ 2026-03-17T04:26:50.703295Z 01O Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-03-17T04:26:50.711692Z 01O Running ‘froll.R’ [25m/25m] 2026-03-17T04:51:21.059612Z 01O Running ‘litedown.R’ 2026-03-17T04:51:21.581390Z 01O Running ‘main.R’ [222s/217s] 2026-03-17T04:54:58.313538Z 01O Running ‘mergelist.R’ 2026-03-17T04:55:02.115327Z 01O Running ‘nafill.R’ 2026-03-17T04:55:03.231305Z 01O Running ‘optimize.R’ 2026-03-17T04:55:06.424553Z 01O Running ‘other.R’ 2026-03-17T04:55:06.772543Z 01O Running ‘programming.R’ 2026-03-17T04:55:07.947536Z 01O Running ‘S4.R’ 2026-03-17T04:55:08.575879Z 01O Running ‘types.R’ 2026-03-17T04:55:09.032436Z 01O [29m/28m] OK 2026-03-17T04:55:09.161815Z 01O * checking for unstated dependencies in vignettes ... OK 2026-03-17T04:55:09.629070Z 01O * checking package vignettes ... OK 2026-03-17T04:55:10.434638Z 01O * checking re-building of vignette outputs ... [38s/39s] OK 2026-03-17T04:55:49.076061Z 01O * checking PDF version of manual ... OK 2026-03-17T04:55:57.645897Z 01O * checking HTML version of manual ... [18s/18s] NOTE 2026-03-17T04:56:15.271756Z 01O Skipping checking math rendering: package 'V8' unavailable 2026-03-17T04:56:15.272547Z 01O * checking for non-standard things in the check directory ... OK 2026-03-17T04:56:15.273340Z 01O * checking for detritus in the temp directory ... OK 2026-03-17T04:56:15.274175Z 01O * DONE 2026-03-17T04:56:15.274646Z 01E 2026-03-17T04:56:15.274801Z 01O Status: 1 NOTE 2026-03-17T04:56:15.275078Z 01E See 2026-03-17T04:56:15.275079Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-03-17T04:56:15.275080Z 01E for details. 2026-03-17T04:56:15.275273Z 01E 2026-03-17T04:56:15.298183Z 01O $ (! grep "warning:" data.table.Rcheck/00install.out) 2026-03-17T04:56:15.300533Z 01O $ Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 1 NOTE"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (V8 package) but ", shQuote(l)) else q("no")' 2026-03-17T04:56:15.704752Z 00O section_end:1773723375:step_script 2026-03-17T04:56:15.704760Z 00O+section_start:1773723375:after_script 2026-03-17T04:56:15.705147Z 00O+Running after_script 2026-03-17T04:56:16.071901Z 01O Running after script... 2026-03-17T04:56:16.071929Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-03-17T04:56:16.073218Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-03-17T04:56:16.073269Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-03-17T04:56:16.073437Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-03-17T04:56:16.073441Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-03-17T04:56:16.254024Z 00O section_end:1773723376:after_script 2026-03-17T04:56:16.254030Z 00O+section_start:1773723376:upload_artifacts_on_success 2026-03-17T04:56:16.254741Z 00O+Uploading artifacts for successful job 2026-03-17T04:56:16.690857Z 01O Uploading artifacts... 2026-03-17T04:56:16.776194Z 01E bus/test-lin-dev-gcc-strict-cran: found 714 matching artifact files and directories 2026-03-17T04:56:19.204269Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=0da3b7cfbd33497dbbd20495f68983cf id=13520321990 responseStatus=201 Created token=6d_xwZt6z 2026-03-17T04:56:19.402007Z 00O section_end:1773723379:upload_artifacts_on_success 2026-03-17T04:56:19.402015Z 00O+section_start:1773723379:cleanup_file_variables 2026-03-17T04:56:19.402109Z 00O+Cleaning up project directory and file based variables 2026-03-17T04:56:19.950171Z 00O section_end:1773723379:cleanup_file_variables 2026-03-17T04:56:19.950179Z 00O+ 2026-03-17T04:56:19.988999Z 00O Job succeeded