2026-10-30T04:20:38.696846Z 00O Running with gitlab-runner 19.6.0~pre.2364.gcc7d9535 (cc7d9535)
2026-10-30T04:20:38.696863Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_7UEpGS1dWicA
2026-10-30T04:20:38.696865Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-30T04:20:38.696875Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-30T04:20:38.696903Z 00O Resolving secrets
2026-10-30T04:20:38.697044Z 00O section_start:1793334038:prepare_executor

2026-10-30T04:20:38.697047Z 00O+Preparing the "docker+machine" executor
2026-10-30T04:20:38.776372Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-10-30T04:20:38.776411Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:38.776418Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:38.777524Z 00O Pulling docker image us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 ...
2026-10-30T04:20:40.154777Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:41.841465Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:41.841479Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:41.843013Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:41.843022Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-10-30T04:20:41.844158Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-30T04:20:41.844164Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-10-30T04:21:00.521403Z 00O Using docker image sha256:e1dd83d3676557200d30f0661c75972db00061291d196a9f82915d217dd1e390 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:94c9e9d3baff18ddc0cf0db2ad8c686b2c854389c61aea46e9d31de210edf00d ...
2026-10-30T04:21:00.521477Z 00O section_end:1793334060:prepare_executor

2026-10-30T04:21:00.521564Z 00O+section_start:1793334060:prepare_script

2026-10-30T04:21:00.521568Z 00O+Preparing environment
2026-10-30T04:21:00.521595Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:21:00.521603Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:21:00.523033Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:21:00.523042Z 00O Using effective pull policy of [always] for container sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20
2026-10-30T04:21:05.470478Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1793333974-63393390...
2026-10-30T04:21:05.473415Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-30T04:21:05.625964Z 00O section_end:1793334065:prepare_script

2026-10-30T04:21:05.626387Z 00O+section_start:1793334065:get_sources

2026-10-30T04:21:05.626394Z 00O+Getting source from Git repository
2026-10-30T04:21:05.945801Z 01O Gitaly correlation ID: e04fd43015d34cffb374b342ef14a837
2026-10-30T04:21:05.951157Z 01O Fetching changes...
2026-10-30T04:21:05.954986Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-30T04:21:05.956628Z 01O Created fresh repository.
2026-10-30T04:21:11.515112Z 01O Checking out 086c6466 as detached HEAD (ref is master)...
2026-10-30T04:21:11.689320Z 01O 
2026-10-30T04:21:11.689325Z 01O Skipping Git submodules setup
2026-10-30T04:21:11.689326Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-30T04:21:11.882447Z 00O section_end:1793334071:get_sources

2026-10-30T04:21:11.883116Z 00O+section_start:1793334071:download_artifacts

2026-10-30T04:21:11.883121Z 00O+Downloading artifacts
2026-10-30T04:21:12.238642Z 01O Downloading artifacts for build (17597456896)...
2026-10-30T04:21:12.441988Z 01E Direct download from storage.googleapis.com         correlation_id=271663f969f549478bd3f47ea928fca6 id=17597456896 status=302 token=74_Qz_kAB
2026-10-30T04:21:12.614222Z 01E Downloading artifacts from coordinator... ok        correlation_id=271663f969f549478bd3f47ea928fca6 id=17597456896 status=302 token=74_Qz_kAB
2026-10-30T04:21:12.623031Z 01O Downloading artifacts for mirror-packages (17597456894)...
2026-10-30T04:21:12.837105Z 01E Direct download from storage.googleapis.com         correlation_id=abdf8c2490cf4176a8e115c8590879c8 id=17597456894 status=302 token=74_Qz_kAB
2026-10-30T04:21:13.310312Z 01E Downloading artifacts from coordinator... ok        correlation_id=abdf8c2490cf4176a8e115c8590879c8 id=17597456894 status=302 token=74_Qz_kAB
2026-10-30T04:21:14.393661Z 00O section_end:1793334074:download_artifacts

2026-10-30T04:21:14.393917Z 00O+section_start:1793334074:step_script

2026-10-30T04:21:14.393924Z 00O+Executing "step_script" stage of the job script
2026-10-30T04:21:14.393932Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-10-30T04:21:14.395899Z 00O Using docker image sha256:e1dd83d3676557200d30f0661c75972db00061291d196a9f82915d217dd1e390 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:94c9e9d3baff18ddc0cf0db2ad8c686b2c854389c61aea46e9d31de210edf00d ...
2026-10-30T04:21:14.729450Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-30T04:21:14.735998Z 01O $ mkdir -p ~/.R
2026-10-30T04:21:14.737093Z 01O $ echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-30T04:21:14.737110Z 01O $ echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-30T04:21:14.737164Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-10-30T04:21:15.056427Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-10-30T04:21:15.056435Z 01E 
2026-10-30T04:23:26.426515Z 01E Updating HTML index of packages in '.Library'
2026-10-30T04:23:26.426885Z 01E Making 'packages.html' ... done
2026-10-30T04:23:26.439447Z 01O $ R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
2026-10-30T04:23:27.618488Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-10-30T04:23:27.618533Z 01O * using R Under development (unstable) (2026-10-28 r90783)
2026-10-30T04:23:27.618763Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-30T04:23:27.618976Z 01O * R was compiled by
2026-10-30T04:23:27.619114Z 01O     gcc (Debian 16.2.0-3) 16.2.0
2026-10-30T04:23:27.619115Z 01O     GNU Fortran (Debian 16.2.0-3) 16.2.0
2026-10-30T04:23:27.619359Z 01O * running under: Debian GNU/Linux forky/sid
2026-10-30T04:23:27.619541Z 01O * using session charset: UTF-8
2026-10-30T04:23:27.620233Z 01O * current time: 2026-10-30 04:23:27 UTC
2026-10-30T04:23:29.827446Z 01O * using option ‘--as-cran’
2026-10-30T04:23:29.827653Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-10-30T04:23:29.831109Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-10-30T04:23:29.831283Z 01O * package encoding: UTF-8
2026-10-30T04:23:29.831585Z 01O * checking CRAN incoming feasibility ... OK
2026-10-30T04:23:31.060525Z 01O * checking package namespace information ... OK
2026-10-30T04:23:31.073159Z 01O * checking package dependencies ... OK
2026-10-30T04:23:32.325821Z 01O * checking if this is a source package ... OK
2026-10-30T04:23:32.328441Z 01O * checking if there is a namespace ... OK
2026-10-30T04:23:32.332089Z 01O * checking for .dll and .exe files ... OK
2026-10-30T04:23:32.332562Z 01O * checking for hidden files and directories ... OK
2026-10-30T04:23:32.334374Z 01O * checking for portable file names ... OK
2026-10-30T04:23:32.338816Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-30T04:23:32.343967Z 01O * checking whether package ‘data.table’ can be installed ... [46s/30s] OK
2026-10-30T04:24:02.337196Z 01O * used C compiler: ‘gcc (Debian 16.2.0-3) 16.2.0’
2026-10-30T04:24:02.337626Z 01O * checking installed package size ... INFO
2026-10-30T04:24:02.340910Z 01O   installed size is  8.8Mb
2026-10-30T04:24:02.341847Z 01O   sub-directories of 1Mb or more:
2026-10-30T04:24:02.342660Z 01O     doc     1.1Mb
2026-10-30T04:24:02.342661Z 01O     libs    2.3Mb
2026-10-30T04:24:02.342661Z 01O     po      1.7Mb
2026-10-30T04:24:02.342662Z 01O     tests   2.2Mb
2026-10-30T04:24:02.354969Z 01O * checking package directory ... OK
2026-10-30T04:24:02.355301Z 01O * checking for future file timestamps ... OK
2026-10-30T04:24:02.355935Z 01O * checking ‘build’ directory ... OK
2026-10-30T04:24:02.356919Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-30T04:24:03.954466Z 01O * checking top-level files ... OK
2026-10-30T04:24:05.285209Z 01O * checking for left-over files ... OK
2026-10-30T04:24:05.287667Z 01O * checking index information ... OK
2026-10-30T04:24:05.489851Z 01O * checking package subdirectories ... OK
2026-10-30T04:24:05.960985Z 01O * checking code files for non-ASCII characters ... OK
2026-10-30T04:24:06.015797Z 01O * checking R files for syntax errors ... OK
2026-10-30T04:24:06.103003Z 01O * checking whether the package can be loaded ... OK
2026-10-30T04:24:06.421749Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-30T04:24:06.629411Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-30T04:24:06.834998Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-30T04:24:07.047004Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-30T04:24:07.357069Z 01O * checking loading without being on the library search path ... OK
2026-10-30T04:24:07.970712Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-30T04:24:08.266644Z 01O * checking use of S3 registration ... OK
2026-10-30T04:24:08.299097Z 01O * checking dependencies in R code ... OK
2026-10-30T04:24:10.168302Z 01O * checking S3 generic/method consistency ... OK
2026-10-30T04:24:10.717867Z 01O * checking replacement functions ... OK
2026-10-30T04:24:10.952124Z 01O * checking foreign function calls ... OK
2026-10-30T04:24:13.178603Z 01O * checking R code for possible problems ... [47s/47s] OK
2026-10-30T04:25:00.530636Z 01O * checking Rd files ... OK
2026-10-30T04:25:02.096766Z 01O * checking Rd metadata ... OK
2026-10-30T04:25:02.150432Z 01O * checking Rd line widths ... OK
2026-10-30T04:25:02.739838Z 01O * checking Rd cross-references ... OK
2026-10-30T04:25:03.961642Z 01O * checking for missing documentation entries ... OK
2026-10-30T04:25:04.369485Z 01O * checking for code/documentation mismatches ... OK
2026-10-30T04:25:05.933460Z 01O * checking Rd \usage sections ... OK
2026-10-30T04:25:07.335273Z 01O * checking Rd contents ... OK
2026-10-30T04:25:08.486649Z 01O * checking for unstated dependencies in examples ... OK
2026-10-30T04:25:09.409444Z 01O * checking line endings in shell scripts ... OK
2026-10-30T04:25:09.410069Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-30T04:25:09.427973Z 01O * checking line endings in Makefiles ... OK
2026-10-30T04:25:09.428507Z 01O * checking compilation flags in Makevars ... OK
2026-10-30T04:25:09.488952Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-30T04:25:09.489888Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-30T04:25:09.491159Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-30T04:25:09.494038Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-10-30T04:25:09.499021Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-10-30T04:25:09.518931Z 01O * checking compilation flags used ... OK
2026-10-30T04:25:09.520662Z 01O * checking compiled code ... OK
2026-10-30T04:25:11.812795Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-10-30T04:25:12.060656Z 01O * checking files in ‘vignettes’ ... OK
2026-10-30T04:25:13.326346Z 01O * checking examples ... OK
2026-10-30T04:25:21.932855Z 01O * checking examples with --run-donttest ... [11s/12s] OK
2026-10-30T04:25:34.487528Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-10-30T04:25:34.572699Z 01O * checking tests ...
2026-10-30T04:25:34.770041Z 01O   Running ‘autoprint.R’
2026-10-30T04:25:35.180349Z 01O   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-10-30T04:25:35.187065Z 01O   Running ‘froll.R’ [24m/23m]
2026-10-30T04:48:50.596789Z 01O   Running ‘litedown.R’
2026-10-30T04:48:51.059386Z 01O   Running ‘main.R’ [220s/216s]
2026-10-30T04:52:26.635964Z 01O   Running ‘mergelist.R’
2026-10-30T04:52:30.080975Z 01O   Running ‘nafill.R’
2026-10-30T04:52:31.080019Z 01O   Running ‘optimize.R’ [14s/13s]
2026-10-30T04:52:44.016938Z 01O   Running ‘other.R’
2026-10-30T04:52:44.337460Z 01O   Running ‘programming.R’
2026-10-30T04:52:45.430371Z 01O   Running ‘S4.R’
2026-10-30T04:52:45.971850Z 01O   Running ‘self.R’
2026-10-30T04:52:46.349047Z 01O   Running ‘types.R’
2026-10-30T04:52:46.750045Z 01O  [28m/27m] OK
2026-10-30T04:52:47.000185Z 01O * checking for unstated dependencies in vignettes ... OK
2026-10-30T04:52:47.414534Z 01O * checking package vignettes ... OK
2026-10-30T04:52:49.146128Z 01O * checking re-building of vignette outputs ... [37s/37s] OK
2026-10-30T04:53:26.384071Z 01O * checking PDF version of manual ... OK
2026-10-30T04:53:35.471774Z 01O * checking HTML version of manual ... [10s/10s] NOTE
2026-10-30T04:53:45.927413Z 01O Skipping checking math rendering: package 'V8' unavailable
2026-10-30T04:53:45.927671Z 01O * checking for non-standard things in the check directory ... OK
2026-10-30T04:53:45.928287Z 01O * checking for detritus in the temp directory ... OK
2026-10-30T04:53:45.928999Z 01O * DONE
2026-10-30T04:53:45.929462Z 01E 
2026-10-30T04:53:45.929537Z 01O Status: 1 NOTE
2026-10-30T04:53:45.930026Z 01E See
2026-10-30T04:53:45.930026Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-10-30T04:53:45.930027Z 01E for details.
2026-10-30T04:53:45.930127Z 01E 
2026-10-30T04:53:45.944030Z 01O $ (! grep "warning:" data.table.Rcheck/00install.out)
2026-10-30T04:53:45.945689Z 01O $ Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 1 NOTE"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (V8 package) but ", shQuote(l)) else q("no")'
2026-10-30T04:53:46.300865Z 00O section_end:1793336026:step_script

2026-10-30T04:53:46.301136Z 00O+section_start:1793336026:after_script

2026-10-30T04:53:46.301140Z 00O+Running after_script
2026-10-30T04:53:46.599321Z 01O Running after script...
2026-10-30T04:53:46.599346Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-30T04:53:46.600279Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-30T04:53:46.600280Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-30T04:53:46.600297Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-30T04:53:46.600339Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-30T04:53:46.751599Z 00O section_end:1793336026:after_script

2026-10-30T04:53:46.752291Z 00O+section_start:1793336026:upload_artifacts_on_success

2026-10-30T04:53:46.752298Z 00O+Uploading artifacts for successful job
2026-10-30T04:53:47.108711Z 01O Uploading artifacts...
2026-10-30T04:53:47.167007Z 01E bus/test-lin-dev-gcc-strict-cran: found 721 matching artifact files and directories 
2026-10-30T04:53:48.664112Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=57afbb29c2b74e52b0684204dc3c3da5 id=17597456900 status=201 token=74_Qz_kAB
2026-10-30T04:53:48.819196Z 00O section_end:1793336028:upload_artifacts_on_success

2026-10-30T04:53:48.819571Z 00O+section_start:1793336028:cleanup_file_variables

2026-10-30T04:53:48.819579Z 00O+Cleaning up project directory and file based variables
2026-10-30T04:53:49.315238Z 00O section_end:1793336029:cleanup_file_variables

2026-10-30T04:53:49.351978Z 00O Job succeeded