2026-09-15T04:20:22.324849Z 00O Running with gitlab-runner 19.4.0~pre.1956.g7b010e09 (7b010e09)
2026-09-15T04:20:22.324881Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_2RLCIvruIslL
2026-09-15T04:20:22.324884Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-09-15T04:20:22.324897Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true
2026-09-15T04:20:22.324927Z 00O Resolving secrets
2026-09-15T04:20:22.325141Z 00O section_start:1789446022:prepare_executor

2026-09-15T04:20:22.325146Z 00O+Preparing the "docker+machine" executor
2026-09-15T04:20:22.477712Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-09-15T04:20:22.477755Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:22.477763Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:22.478580Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:22.478592Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 ...
2026-09-15T04:20:23.546273Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.980450Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:24.980466Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:24.981408Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.981419Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-09-15T04:20:24.982091Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:24.982098Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict ...
2026-09-15T04:20:44.905011Z 00O Using docker image sha256:682dcec7578e3db6b7a9f0dbd863541cfdb7ad27196827c55a515850370a3132 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:c03a93986670f82807ed614929e18a288290ab5402ade7cf9cc461cfb697f9c8 ...
2026-09-15T04:20:44.905105Z 00O section_end:1789446044:prepare_executor

2026-09-15T04:20:44.905248Z 00O+section_start:1789446044:prepare_script

2026-09-15T04:20:44.905258Z 00O+Preparing environment
2026-09-15T04:20:44.905303Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:44.905315Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:44.906388Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:44.906402Z 00O Using effective pull policy of [always] for container sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef
2026-09-15T04:20:54.759534Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1789445958-39c4ae0e...
2026-09-15T04:20:54.891990Z 00O section_end:1789446054:prepare_script

2026-09-15T04:20:54.892632Z 00O+section_start:1789446054:get_sources

2026-09-15T04:20:54.892639Z 00O+Getting source from Git repository
2026-09-15T04:20:55.145222Z 01O Gitaly correlation ID: 8f468a93f17d42f2914c1a00125e1cf9
2026-09-15T04:20:55.149489Z 01O Fetching changes...
2026-09-15T04:20:55.151840Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-09-15T04:20:55.153207Z 01O Created fresh repository.
2026-09-15T04:20:58.912983Z 01O Checking out a3eeb4c0 as detached HEAD (ref is master)...
2026-09-15T04:20:59.032502Z 01O 
2026-09-15T04:20:59.032509Z 01O Skipping Git submodules setup
2026-09-15T04:20:59.032511Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-09-15T04:20:59.205080Z 00O section_end:1789446059:get_sources

2026-09-15T04:20:59.205992Z 00O+section_start:1789446059:download_artifacts

2026-09-15T04:20:59.206001Z 00O+Downloading artifacts
2026-09-15T04:20:59.495898Z 01O Downloading artifacts for mirror-packages (16501040599)...
2026-09-15T04:20:59.686681Z 01E Direct download from storage.googleapis.com         correlation_id=7587c55c8cdf43a896c4d7fbded59fa0 id=16501040599 status=302 token=73_ZBz5Wm
2026-09-15T04:21:00.235137Z 01E Downloading artifacts from coordinator... ok        correlation_id=7587c55c8cdf43a896c4d7fbded59fa0 id=16501040599 status=302 token=73_ZBz5Wm
2026-09-15T04:21:00.676720Z 01O Downloading artifacts for build (16501040600)...
2026-09-15T04:21:00.860700Z 01E Direct download from storage.googleapis.com         correlation_id=c37f3451f9c94838aa53987b36b5f560 id=16501040600 status=302 token=73_ZBz5Wm
2026-09-15T04:21:01.070746Z 01E Downloading artifacts from coordinator... ok        correlation_id=c37f3451f9c94838aa53987b36b5f560 id=16501040600 status=302 token=73_ZBz5Wm
2026-09-15T04:21:01.700294Z 00O section_end:1789446061:download_artifacts

2026-09-15T04:21:01.700807Z 00O+section_start:1789446061:step_script

2026-09-15T04:21:01.700817Z 00O+Executing "step_script" stage of the job script
2026-09-15T04:21:01.700829Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict
2026-09-15T04:21:01.701801Z 00O Using docker image sha256:682dcec7578e3db6b7a9f0dbd863541cfdb7ad27196827c55a515850370a3132 for registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict with digest registry.gitlab.com/rdatatable/dockerfiles/r-devel-gcc-strict@sha256:c03a93986670f82807ed614929e18a288290ab5402ade7cf9cc461cfb697f9c8 ...
2026-09-15T04:21:01.974607Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-09-15T04:21:01.978736Z 01O $ mkdir -p ~/.R
2026-09-15T04:21:01.979492Z 01O $ echo 'CFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-09-15T04:21:01.979497Z 01O $ echo 'CXXFLAGS=-g -O2 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-09-15T04:21:01.979542Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-09-15T04:21:02.209270Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘lattice’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-09-15T04:21:02.209279Z 01E 
2026-09-15T04:22:34.465422Z 01E Updating HTML index of packages in '.Library'
2026-09-15T04:22:34.465927Z 01E Making 'packages.html' ... done
2026-09-15T04:22:34.475916Z 01O $ R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
2026-09-15T04:22:35.394364Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-09-15T04:22:35.394379Z 01O * using R Under development (unstable) (2026-09-13 r90534)
2026-09-15T04:22:35.394667Z 01O * using platform: x86_64-pc-linux-gnu
2026-09-15T04:22:35.394698Z 01O * R was compiled by
2026-09-15T04:22:35.394793Z 01O     gcc (Debian 16.2.0-1) 16.2.0
2026-09-15T04:22:35.394794Z 01O     GNU Fortran (Debian 16.2.0-1) 16.2.0
2026-09-15T04:22:35.394903Z 01O * running under: Debian GNU/Linux forky/sid
2026-09-15T04:22:35.395107Z 01O * using session charset: UTF-8
2026-09-15T04:22:35.395627Z 01O * current time: 2026-09-15 04:22:35 UTC
2026-09-15T04:22:36.969075Z 01O * using option ‘--as-cran’
2026-09-15T04:22:36.969256Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-09-15T04:22:36.971430Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-09-15T04:22:36.971577Z 01O * package encoding: UTF-8
2026-09-15T04:22:36.971750Z 01O * checking CRAN incoming feasibility ... NOTE
2026-09-15T04:22:37.897858Z 01O Maintainer: ‘Tyson Barrett <t.barrett88@gmail.com>’
2026-09-15T04:22:37.897861Z 01O 
2026-09-15T04:22:37.897862Z 01O Authors@R field should be a call to person(), or combine such calls.
2026-09-15T04:22:37.897929Z 01O * checking package namespace information ... OK
2026-09-15T04:22:37.906024Z 01O * checking package dependencies ... OK
2026-09-15T04:22:38.933236Z 01O * checking if this is a source package ... OK
2026-09-15T04:22:38.934948Z 01O * checking if there is a namespace ... OK
2026-09-15T04:22:38.937512Z 01O * checking for .dll and .exe files ... OK
2026-09-15T04:22:38.937841Z 01O * checking for hidden files and directories ... OK
2026-09-15T04:22:38.939019Z 01O * checking for portable file names ... OK
2026-09-15T04:22:38.941919Z 01O * checking for sufficient/correct file permissions ... OK
2026-09-15T04:22:38.945277Z 01O * checking whether package ‘data.table’ can be installed ... [32s/21s] OK
2026-09-15T04:23:00.359016Z 01O * used C compiler: ‘gcc (Debian 16.2.0-1) 16.2.0’
2026-09-15T04:23:00.359336Z 01O * checking installed package size ... INFO
2026-09-15T04:23:00.362218Z 01O   installed size is  8.7Mb
2026-09-15T04:23:00.362881Z 01O   sub-directories of 1Mb or more:
2026-09-15T04:23:00.363387Z 01O     doc     1.1Mb
2026-09-15T04:23:00.363388Z 01O     libs    2.3Mb
2026-09-15T04:23:00.363389Z 01O     po      1.7Mb
2026-09-15T04:23:00.363390Z 01O     tests   2.2Mb
2026-09-15T04:23:00.371658Z 01O * checking package directory ... OK
2026-09-15T04:23:00.371913Z 01O * checking for future file timestamps ... OK
2026-09-15T04:23:00.372388Z 01O * checking ‘build’ directory ... OK
2026-09-15T04:23:00.373156Z 01O * checking DESCRIPTION meta-information ... OK
2026-09-15T04:23:01.490894Z 01O * checking top-level files ... OK
2026-09-15T04:23:02.476225Z 01O * checking for left-over files ... OK
2026-09-15T04:23:02.478266Z 01O * checking index information ... OK
2026-09-15T04:23:02.610092Z 01O * checking package subdirectories ... OK
2026-09-15T04:23:02.923979Z 01O * checking code files for non-ASCII characters ... OK
2026-09-15T04:23:02.958885Z 01O * checking R files for syntax errors ... OK
2026-09-15T04:23:03.013165Z 01O * checking whether the package can be loaded ... OK
2026-09-15T04:23:03.223143Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-09-15T04:23:03.357874Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-09-15T04:23:03.489212Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-09-15T04:23:03.623204Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-09-15T04:23:03.837002Z 01O * checking loading without being on the library search path ... OK
2026-09-15T04:23:04.256229Z 01O * checking whether startup messages can be suppressed ... OK
2026-09-15T04:23:04.457414Z 01O * checking use of S3 registration ... OK
2026-09-15T04:23:04.477991Z 01O * checking dependencies in R code ... OK
2026-09-15T04:23:05.789228Z 01O * checking S3 generic/method consistency ... OK
2026-09-15T04:23:06.172727Z 01O * checking replacement functions ... OK
2026-09-15T04:23:06.322184Z 01O * checking foreign function calls ... OK
2026-09-15T04:23:07.902220Z 01O * checking R code for possible problems ... [35s/35s] OK
2026-09-15T04:23:42.714759Z 01O * checking Rd files ... OK
2026-09-15T04:23:43.888123Z 01O * checking Rd metadata ... OK
2026-09-15T04:23:43.921880Z 01O * checking Rd line widths ... NOTE
2026-09-15T04:23:44.342513Z 01O Rd file 'nafill.Rd':
2026-09-15T04:23:44.342515Z 01O   \usage lines wider than 90 characters:
2026-09-15T04:23:44.342516Z 01O      setnafill(x, type=c("const", "locf", "nocb"), fill=NA, nan=NA, cols=seq_along(x), limit=Inf)
2026-09-15T04:23:44.342517Z 01O 
2026-09-15T04:23:44.342768Z 01O These lines will be truncated in the PDF manual.
2026-09-15T04:23:44.342921Z 01O * checking Rd cross-references ... OK
2026-09-15T04:23:45.291130Z 01O * checking for missing documentation entries ... OK
2026-09-15T04:23:45.574016Z 01O * checking for code/documentation mismatches ... INFO
2026-09-15T04:23:46.036952Z 01O Exported functions without usage information:
2026-09-15T04:23:46.036954Z 01O   := dcast let melt
2026-09-15T04:23:46.639362Z 01O * checking Rd \usage sections ... OK
2026-09-15T04:23:47.631633Z 01O * checking Rd contents ... OK
2026-09-15T04:23:48.477542Z 01O * checking for unstated dependencies in examples ... OK
2026-09-15T04:23:49.130765Z 01O * checking line endings in shell scripts ... OK
2026-09-15T04:23:49.131156Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-09-15T04:23:49.142477Z 01O * checking line endings in Makefiles ... OK
2026-09-15T04:23:49.142834Z 01O * checking compilation flags in Makevars ... OK
2026-09-15T04:23:49.180977Z 01O * checking for GNU extensions in Makefiles ... OK
2026-09-15T04:23:49.181524Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-09-15T04:23:49.182400Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-09-15T04:23:49.184321Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-09-15T04:23:49.187716Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-09-15T04:23:49.200976Z 01O * checking compilation flags used ... OK
2026-09-15T04:23:49.202286Z 01O * checking compiled code ... OK
2026-09-15T04:23:50.662912Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-09-15T04:23:50.824696Z 01O * checking files in ‘vignettes’ ... OK
2026-09-15T04:23:51.710365Z 01O * checking examples ... OK
2026-09-15T04:23:59.637808Z 01O * checking examples with --run-donttest ... OK
2026-09-15T04:24:08.759519Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-09-15T04:24:08.812163Z 01O * checking tests ...
2026-09-15T04:24:08.941631Z 01O   Running ‘autoprint.R’
2026-09-15T04:24:09.225127Z 01O   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-09-15T04:24:09.229087Z 01O   Running ‘froll.R’ [17m/17m]
2026-09-15T04:41:06.087579Z 01O   Running ‘litedown.R’
2026-09-15T04:41:06.401797Z 01O   Running ‘main.R’ [182s/179s]
2026-09-15T04:44:05.026927Z 01O   Running ‘mergelist.R’
2026-09-15T04:44:07.280262Z 01O   Running ‘nafill.R’
2026-09-15T04:44:07.886589Z 01O   Running ‘optimize.R’
2026-09-15T04:44:09.776573Z 01O   Running ‘other.R’
2026-09-15T04:44:09.965638Z 01O   Running ‘programming.R’
2026-09-15T04:44:10.647657Z 01O   Running ‘S4.R’
2026-09-15T04:44:10.980783Z 01O   Running ‘self.R’
2026-09-15T04:44:11.210825Z 01O   Running ‘types.R’
2026-09-15T04:44:11.456676Z 01O  [20m/20m] OK
2026-09-15T04:44:11.607742Z 01O * checking for unstated dependencies in vignettes ... OK
2026-09-15T04:44:11.842672Z 01O * checking package vignettes ... OK
2026-09-15T04:44:12.899599Z 01O * checking re-building of vignette outputs ... [22s/23s] OK
2026-09-15T04:44:35.514368Z 01O * checking PDF version of manual ... OK
2026-09-15T04:44:41.080182Z 01O * checking HTML version of manual ... NOTE
2026-09-15T04:44:48.364064Z 01O Skipping checking math rendering: package 'V8' unavailable
2026-09-15T04:44:48.364073Z 01O * checking for non-standard things in the check directory ... OK
2026-09-15T04:44:48.364077Z 01O * checking for detritus in the temp directory ... OK
2026-09-15T04:44:48.364495Z 01O * DONE
2026-09-15T04:44:48.364797Z 01E 
2026-09-15T04:44:48.364912Z 01O Status: 3 NOTEs
2026-09-15T04:44:48.365036Z 01E See
2026-09-15T04:44:48.365037Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-09-15T04:44:48.365038Z 01E for details.
2026-09-15T04:44:48.365107Z 01E 
2026-09-15T04:44:48.375531Z 01O $ (! grep "warning:" data.table.Rcheck/00install.out)
2026-09-15T04:44:48.376532Z 01O $ Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); notes<-"Status: 1 NOTE"; if (!identical(l, notes)) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote(notes), " (V8 package) but ", shQuote(l)) else q("no")'
2026-09-15T04:44:48.490617Z 01E Error: Last line of '00check.log' is not 'Status: 1 NOTE' (V8 package) but 'Status: 3 NOTEs'
2026-09-15T04:44:48.490624Z 01E Execution halted
2026-09-15T04:44:48.623157Z 00O section_end:1789447488:step_script

2026-09-15T04:44:48.623816Z 00O+section_start:1789447488:after_script

2026-09-15T04:44:48.623825Z 00O+Running after_script
2026-09-15T04:44:48.836510Z 01O Running after script...
2026-09-15T04:44:48.836543Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-09-15T04:44:48.837060Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-09-15T04:44:48.837077Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-09-15T04:44:48.837141Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-09-15T04:44:48.837215Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-09-15T04:44:48.951157Z 00O section_end:1789447488:after_script

2026-09-15T04:44:48.951979Z 00O+section_start:1789447488:upload_artifacts_on_failure

2026-09-15T04:44:48.951985Z 00O+Uploading artifacts for failed job
2026-09-15T04:44:49.207218Z 01O Uploading artifacts...
2026-09-15T04:44:49.238823Z 01E bus/test-lin-dev-gcc-strict-cran: found 721 matching artifact files and directories 
2026-09-15T04:44:50.305846Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=72b72e159b0446f29866075ff74c36eb id=16501040604 status=201 token=73_ZBz5Wm
2026-09-15T04:44:50.427645Z 00O section_end:1789447490:upload_artifacts_on_failure

2026-09-15T04:44:50.428031Z 00O+section_start:1789447490:cleanup_file_variables

2026-09-15T04:44:50.428037Z 00O+Cleaning up project directory and file based variables
2026-09-15T04:44:50.771946Z 00O section_end:1789447490:cleanup_file_variables

2026-09-15T04:44:50.794693Z 00O ERROR: Job failed: exit code 1