2026-10-30T04:20:38.068281Z 00O Running with gitlab-runner 19.6.0~pre.2364.gcc7d9535 (cc7d9535)
2026-10-30T04:20:38.068303Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_9Aj3iJhDtcrU
2026-10-30T04:20:38.068305Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-30T04:20:38.068315Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-30T04:20:38.068344Z 00O Resolving secrets
2026-10-30T04:20:38.068470Z 00O section_start:1793334038:prepare_executor

2026-10-30T04:20:38.068473Z 00O+Preparing the "docker+machine" executor
2026-10-30T04:20:38.145054Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-10-30T04:20:38.145094Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:38.145102Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:38.145828Z 00O Pulling docker image us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 ...
2026-10-30T04:20:39.373399Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:40.968422Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:40.968433Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:40.969382Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:40.969390Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-10-30T04:20:40.970098Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-30T04:20:40.970103Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-10-30T04:20:49.932562Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-10-30T04:20:49.932633Z 00O section_end:1793334049:prepare_executor

2026-10-30T04:20:49.932726Z 00O+section_start:1793334049:prepare_script

2026-10-30T04:20:49.932729Z 00O+Preparing environment
2026-10-30T04:20:49.932753Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:49.932761Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:49.933710Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:49.933719Z 00O Using effective pull policy of [always] for container sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20
2026-10-30T04:20:59.039582Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1793333969-2f1b4960...
2026-10-30T04:20:59.042103Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-30T04:20:59.181411Z 00O section_end:1793334059:prepare_script

2026-10-30T04:20:59.181742Z 00O+section_start:1793334059:get_sources

2026-10-30T04:20:59.181746Z 00O+Getting source from Git repository
2026-10-30T04:20:59.469753Z 01O Gitaly correlation ID: 3e0fffa2f864402a89c0c417d3e3fe86
2026-10-30T04:20:59.474174Z 01O Fetching changes...
2026-10-30T04:20:59.476389Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-30T04:20:59.478274Z 01O Created fresh repository.
2026-10-30T04:21:04.248941Z 01O Checking out 086c6466 as detached HEAD (ref is master)...
2026-10-30T04:21:04.405944Z 01O 
2026-10-30T04:21:04.405949Z 01O Skipping Git submodules setup
2026-10-30T04:21:04.405951Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-30T04:21:04.588487Z 00O section_end:1793334064:get_sources

2026-10-30T04:21:04.588975Z 00O+section_start:1793334064:download_artifacts

2026-10-30T04:21:04.588980Z 00O+Downloading artifacts
2026-10-30T04:21:04.903515Z 01O Downloading artifacts for build (17597456896)...
2026-10-30T04:21:05.121762Z 01E Direct download from storage.googleapis.com         correlation_id=e694d594e6a049e881bd41e67bb60def id=17597456896 status=302 token=74_DT_8wT
2026-10-30T04:21:05.287589Z 01E Downloading artifacts from coordinator... ok        correlation_id=e694d594e6a049e881bd41e67bb60def id=17597456896 status=302 token=74_DT_8wT
2026-10-30T04:21:05.296261Z 01O Downloading artifacts for mirror-packages (17597456894)...
2026-10-30T04:21:05.561863Z 01E Direct download from storage.googleapis.com         correlation_id=62aa7c4079e94586af468afd6940431d id=17597456894 status=302 token=74_DT_8wT
2026-10-30T04:21:06.341931Z 01E Downloading artifacts from coordinator... ok        correlation_id=62aa7c4079e94586af468afd6940431d id=17597456894 status=302 token=74_DT_8wT
2026-10-30T04:21:07.424444Z 00O section_end:1793334067:download_artifacts

2026-10-30T04:21:07.424705Z 00O+section_start:1793334067:step_script

2026-10-30T04:21:07.424712Z 00O+Executing "step_script" stage of the job script
2026-10-30T04:21:07.424722Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-10-30T04:21:07.425835Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-10-30T04:21:07.714959Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-30T04:21:07.721238Z 01O $ mkdir -p ~/.R
2026-10-30T04:21:07.722348Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-10-30T04:21:07.901403Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-10-30T04:21:07.901409Z 01E 
2026-10-30T04:22:01.399892Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-30T04:22:01.399901Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-30T04:22:01.399902Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-10-30T04:22:01.543440Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-10-30T04:22:01.543463Z 01O * using R version 4.5.0 (2025-04-11)
2026-10-30T04:22:01.543466Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-30T04:22:01.543651Z 01O * R was compiled by
2026-10-30T04:22:01.543685Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-10-30T04:22:01.543686Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-10-30T04:22:01.543797Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-10-30T04:22:01.543904Z 01O * using session charset: UTF-8
2026-10-30T04:22:02.119443Z 01O * using option ‘--as-cran’
2026-10-30T04:22:02.119544Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-10-30T04:22:02.121602Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-10-30T04:22:02.121702Z 01O * package encoding: UTF-8
2026-10-30T04:22:02.121833Z 01O * checking CRAN incoming feasibility ... OK
2026-10-30T04:22:02.584964Z 01O * checking package namespace information ... OK
2026-10-30T04:22:02.591083Z 01O * checking package dependencies ... OK
2026-10-30T04:22:03.519577Z 01O * checking if this is a source package ... OK
2026-10-30T04:22:03.521513Z 01O * checking if there is a namespace ... OK
2026-10-30T04:22:03.524852Z 01O * checking for .dll and .exe files ... OK
2026-10-30T04:22:03.525083Z 01O * checking for hidden files and directories ... OK
2026-10-30T04:22:03.526609Z 01O * checking for portable file names ... OK
2026-10-30T04:22:03.529955Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-30T04:22:03.533419Z 01O * checking whether package ‘data.table’ can be installed ... [21s/21s] OK
2026-10-30T04:22:24.266926Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-10-30T04:22:24.267212Z 01O * checking installed package size ... OK
2026-10-30T04:22:24.279486Z 01O * checking package directory ... OK
2026-10-30T04:22:24.279811Z 01O * checking for future file timestamps ... OK
2026-10-30T04:22:24.280183Z 01O * checking ‘build’ directory ... OK
2026-10-30T04:22:24.280842Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-30T04:22:25.042955Z 01O * checking top-level files ... OK
2026-10-30T04:22:26.288091Z 01O * checking for left-over files ... OK
2026-10-30T04:22:26.290264Z 01O * checking index information ... OK
2026-10-30T04:22:26.429052Z 01O * checking package subdirectories ... OK
2026-10-30T04:22:26.727116Z 01O * checking code files for non-ASCII characters ... OK
2026-10-30T04:22:26.767323Z 01O * checking R files for syntax errors ... OK
2026-10-30T04:22:26.833181Z 01O * checking whether the package can be loaded ... OK
2026-10-30T04:22:26.990281Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-30T04:22:27.118539Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-30T04:22:27.259110Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-30T04:22:27.393754Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-30T04:22:27.561909Z 01O * checking loading without being on the library search path ... OK
2026-10-30T04:22:27.914152Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-30T04:22:28.087404Z 01O * checking use of S3 registration ... OK
2026-10-30T04:22:28.975310Z 01O * checking dependencies in R code ... OK
2026-10-30T04:22:29.608288Z 01O * checking S3 generic/method consistency ... OK
2026-10-30T04:22:29.901924Z 01O * checking replacement functions ... OK
2026-10-30T04:22:30.066960Z 01O * checking foreign function calls ... OK
2026-10-30T04:22:30.729956Z 01O * checking R code for possible problems ... [13s/13s] OK
2026-10-30T04:22:43.437016Z 01O * checking Rd files ... OK
2026-10-30T04:22:43.937688Z 01O * checking Rd metadata ... OK
2026-10-30T04:22:43.974555Z 01O * checking Rd line widths ... OK
2026-10-30T04:22:44.236160Z 01O * checking Rd cross-references ... OK
2026-10-30T04:22:44.816176Z 01O * checking for missing documentation entries ... OK
2026-10-30T04:22:45.023472Z 01O * checking for code/documentation mismatches ... OK
2026-10-30T04:22:45.828179Z 01O * checking Rd \usage sections ... OK
2026-10-30T04:22:46.575708Z 01O * checking Rd contents ... OK
2026-10-30T04:22:46.950141Z 01O * checking for unstated dependencies in examples ... OK
2026-10-30T04:22:47.332919Z 01O * checking line endings in shell scripts ... OK
2026-10-30T04:22:47.333257Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-30T04:22:47.350748Z 01O * checking line endings in Makefiles ... OK
2026-10-30T04:22:47.350957Z 01O * checking compilation flags in Makevars ... OK
2026-10-30T04:22:47.395800Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-30T04:22:47.396238Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-30T04:22:47.396922Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-30T04:22:47.398689Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-10-30T04:22:47.401839Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-10-30T04:22:47.415634Z 01O * checking compilation flags used ... OK
2026-10-30T04:22:47.416727Z 01O * checking compiled code ... NOTE
2026-10-30T04:22:47.472705Z 01O File ‘data.table/libs/data.table.so’:
2026-10-30T04:22:47.472707Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-10-30T04:22:47.472708Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-10-30T04:22:47.472708Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-10-30T04:22:47.473232Z 01O 
2026-10-30T04:22:47.473232Z 01O Compiled code should not call non-API entry points in R.
2026-10-30T04:22:47.473239Z 01O 
2026-10-30T04:22:47.473239Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-10-30T04:22:47.473239Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-10-30T04:22:47.473240Z 01O non-API entry points.
2026-10-30T04:22:47.474062Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-10-30T04:22:47.648678Z 01O * checking files in ‘vignettes’ ... OK
2026-10-30T04:22:47.816091Z 01O * checking examples ... OK
2026-10-30T04:22:53.434750Z 01O * checking examples with --run-donttest ... OK
2026-10-30T04:23:01.616827Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-10-30T04:23:01.665525Z 01O * checking tests ...
2026-10-30T04:23:01.781309Z 01E   Running ‘autoprint.R’
2026-10-30T04:23:01.972770Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-10-30T04:23:01.978020Z 01E   Running ‘froll.R’ [365s/350s]
2026-10-30T04:28:51.980329Z 01E   Running ‘litedown.R’
2026-10-30T04:28:52.221053Z 01E   Running ‘main.R’ [38s/35s]
2026-10-30T04:29:27.401224Z 01E   Running ‘mergelist.R’
2026-10-30T04:29:28.633550Z 01E   Running ‘nafill.R’
2026-10-30T04:29:28.994402Z 01E   Running ‘optimize.R’
2026-10-30T04:29:32.303965Z 01E   Running ‘other.R’
2026-10-30T04:29:32.473947Z 01E   Running ‘programming.R’
2026-10-30T04:29:32.989805Z 01E   Running ‘S4.R’
2026-10-30T04:29:33.235561Z 01E   Running ‘self.R’
2026-10-30T04:29:33.436542Z 01E   Running ‘types.R’
2026-10-30T04:29:33.627855Z 01O  [410s/392s] OK
2026-10-30T04:29:33.694446Z 01O * checking for unstated dependencies in vignettes ... OK
2026-10-30T04:29:33.927611Z 01O * checking package vignettes ... OK
2026-10-30T04:29:34.294977Z 01O * checking re-building of vignette outputs ... [23s/24s] OK
2026-10-30T04:29:58.050721Z 01O * checking PDF version of manual ... OK
2026-10-30T04:30:02.530737Z 01O * checking HTML version of manual ... OK
2026-10-30T04:30:04.838418Z 01O * checking for non-standard things in the check directory ... OK
2026-10-30T04:30:04.838607Z 01O * checking for detritus in the temp directory ... OK
2026-10-30T04:30:04.839117Z 01O * DONE
2026-10-30T04:30:04.839383Z 01E 
2026-10-30T04:30:04.839411Z 01O Status: 1 NOTE
2026-10-30T04:30:04.839600Z 01E See
2026-10-30T04:30:04.839600Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-10-30T04:30:04.839602Z 01E for details.
2026-10-30T04:30:04.839604Z 01E 
2026-10-30T04:30:05.129054Z 00O section_end:1793334605:step_script

2026-10-30T04:30:05.129373Z 00O+section_start:1793334605:after_script

2026-10-30T04:30:05.129378Z 00O+Running after_script
2026-10-30T04:30:05.403646Z 01O Running after script...
2026-10-30T04:30:05.403662Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-30T04:30:05.404715Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-30T04:30:05.404715Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-30T04:30:05.404723Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-30T04:30:05.404759Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-30T04:30:05.543214Z 00O section_end:1793334605:after_script

2026-10-30T04:30:05.544013Z 00O+section_start:1793334605:upload_artifacts_on_success

2026-10-30T04:30:05.544020Z 00O+Uploading artifacts for successful job
2026-10-30T04:30:05.866710Z 01O Uploading artifacts...
2026-10-30T04:30:05.914086Z 01E bus/test-lin-rel-cran: found 720 matching artifact files and directories 
2026-10-30T04:30:07.097849Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=31f171ec04234a558479aeac821aa2bd id=17597456899 status=201 token=74_DT_8wT
2026-10-30T04:30:07.250400Z 00O section_end:1793334607:upload_artifacts_on_success

2026-10-30T04:30:07.250670Z 00O+section_start:1793334607:cleanup_file_variables

2026-10-30T04:30:07.250676Z 00O+Cleaning up project directory and file based variables
2026-10-30T04:30:07.668651Z 00O section_end:1793334607:cleanup_file_variables

2026-10-30T04:30:07.694214Z 00O Job succeeded