2026-03-17T04:21:34.165926Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-03-17T04:21:34.165935Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2026-03-17T04:21:34.165941Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-03-17T04:21:34.165966Z 00O Resolving secrets
2026-03-17T04:21:34.166078Z 00O section_start:1773721294:prepare_executor
2026-03-17T04:21:34.166079Z 00O+Preparing the "docker+machine" executor
2026-03-17T04:21:34.290425Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-03-17T04:21:38.219060Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-03-17T04:21:38.219505Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-03-17T04:21:38.219513Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-03-17T04:21:49.378581Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-03-17T04:21:49.378645Z 00O section_end:1773721309:prepare_executor
2026-03-17T04:21:49.378646Z 00O+section_start:1773721309:prepare_script
2026-03-17T04:21:49.378730Z 00O+Preparing environment
2026-03-17T04:21:49.379463Z 00O Using effective pull policy of [always] for container sha256:851d52cbb0ac124445ed51af64f452a9407b28cdd48a58e0ebdb468ce4b08741
2026-03-17T04:22:00.342093Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1773721218-b4c2b8e8...
2026-03-17T04:22:00.511234Z 00O section_end:1773721320:prepare_script
2026-03-17T04:22:00.511238Z 00O+section_start:1773721320:get_sources
2026-03-17T04:22:00.511753Z 00O+Getting source from Git repository
2026-03-17T04:22:00.866544Z 01O Gitaly correlation ID: d4c220abd2104576a5f64a032c04bbd5
2026-03-17T04:22:00.872729Z 01O Fetching changes...
2026-03-17T04:22:00.875962Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-03-17T04:22:00.878040Z 01O Created fresh repository.
2026-03-17T04:22:06.457018Z 01O Checking out 7db13b99 as detached HEAD (ref is master)...
2026-03-17T04:22:06.643920Z 01O 
2026-03-17T04:22:06.643923Z 01O Skipping Git submodules setup
2026-03-17T04:22:06.643924Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-03-17T04:22:06.875815Z 00O section_end:1773721326:get_sources
2026-03-17T04:22:06.875818Z 00O+section_start:1773721326:download_artifacts
2026-03-17T04:22:06.876509Z 00O+Downloading artifacts
2026-03-17T04:22:07.276341Z 01O Downloading artifacts for mirror-packages (13520321980)...
2026-03-17T04:22:08.315555Z 01E Downloading artifacts from coordinator... ok        correlation_id=5086bb52f62c452493b40b57cb517e80 host=storage.googleapis.com id=13520321980 responseStatus=200 OK token=6d_xvoxsw
2026-03-17T04:22:08.542266Z 01O Downloading artifacts for build (13520321982)...
2026-03-17T04:22:08.846745Z 01E Downloading artifacts from coordinator... ok        correlation_id=dcd19fdf894d4c4b92ebefca7b8572fc host=storage.googleapis.com id=13520321982 responseStatus=200 OK token=6d_xvoxsw
2026-03-17T04:22:09.554556Z 00O section_end:1773721329:download_artifacts
2026-03-17T04:22:09.554560Z 00O+section_start:1773721329:step_script
2026-03-17T04:22:09.554984Z 00O+Executing "step_script" stage of the job script
2026-03-17T04:22:09.555000Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-03-17T04:22:09.555818Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-03-17T04:22:09.904542Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-03-17T04:22:09.913806Z 01O $ mkdir -p ~/.R
2026-03-17T04:22:09.915265Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-03-17T04:22:10.129354Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-03-17T04:22:10.129363Z 01E 
2026-03-17T04:23:14.356030Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-03-17T04:23:14.356041Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-03-17T04:23:14.356090Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-03-17T04:23:14.524746Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-03-17T04:23:14.524849Z 01O * using R version 4.5.0 (2025-04-11)
2026-03-17T04:23:14.525078Z 01O * using platform: x86_64-pc-linux-gnu
2026-03-17T04:23:14.525340Z 01O * R was compiled by
2026-03-17T04:23:14.525481Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-03-17T04:23:14.525482Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-03-17T04:23:14.525706Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-03-17T04:23:14.525932Z 01O * using session charset: UTF-8
2026-03-17T04:23:15.245937Z 01O * using option ‘--as-cran’
2026-03-17T04:23:15.246283Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-03-17T04:23:15.248754Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-03-17T04:23:15.248960Z 01O * package encoding: UTF-8
2026-03-17T04:23:15.249294Z 01O * checking CRAN incoming feasibility ... OK
2026-03-17T04:23:15.779783Z 01O * checking package namespace information ... OK
2026-03-17T04:23:15.787181Z 01O * checking package dependencies ... OK
2026-03-17T04:23:16.747201Z 01O * checking if this is a source package ... OK
2026-03-17T04:23:16.750383Z 01O * checking if there is a namespace ... OK
2026-03-17T04:23:16.754582Z 01O * checking for .dll and .exe files ... OK
2026-03-17T04:23:16.755171Z 01O * checking for hidden files and directories ... OK
2026-03-17T04:23:16.758134Z 01O * checking for portable file names ... OK
2026-03-17T04:23:16.762427Z 01O * checking for sufficient/correct file permissions ... OK
2026-03-17T04:23:16.766385Z 01O * checking whether package ‘data.table’ can be installed ... [24s/24s] OK
2026-03-17T04:23:40.792770Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-03-17T04:23:40.793167Z 01O * checking installed package size ... OK
2026-03-17T04:23:40.809267Z 01O * checking package directory ... OK
2026-03-17T04:23:40.809707Z 01O * checking for future file timestamps ... OK
2026-03-17T04:23:40.810312Z 01O * checking ‘build’ directory ... OK
2026-03-17T04:23:40.811151Z 01O * checking DESCRIPTION meta-information ... OK
2026-03-17T04:23:41.629388Z 01O * checking top-level files ... OK
2026-03-17T04:23:43.109925Z 01O * checking for left-over files ... OK
2026-03-17T04:23:43.113016Z 01O * checking index information ... OK
2026-03-17T04:23:43.272210Z 01O * checking package subdirectories ... OK
2026-03-17T04:23:43.636339Z 01O * checking code files for non-ASCII characters ... OK
2026-03-17T04:23:43.685463Z 01O * checking R files for syntax errors ... OK
2026-03-17T04:23:43.763231Z 01O * checking whether the package can be loaded ... OK
2026-03-17T04:23:43.951611Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-03-17T04:23:44.104477Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-03-17T04:23:44.264702Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-03-17T04:23:44.424455Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-03-17T04:23:44.630694Z 01O * checking loading without being on the library search path ... OK
2026-03-17T04:23:45.036848Z 01O * checking whether startup messages can be suppressed ... OK
2026-03-17T04:23:45.232055Z 01O * checking use of S3 registration ... OK
2026-03-17T04:23:46.201110Z 01O * checking dependencies in R code ... OK
2026-03-17T04:23:47.068091Z 01O * checking S3 generic/method consistency ... OK
2026-03-17T04:23:47.423755Z 01O * checking replacement functions ... OK
2026-03-17T04:23:47.617467Z 01O * checking foreign function calls ... OK
2026-03-17T04:23:48.410921Z 01O * checking R code for possible problems ... [16s/16s] OK
2026-03-17T04:24:04.582992Z 01O * checking Rd files ... OK
2026-03-17T04:24:05.152001Z 01O * checking Rd metadata ... OK
2026-03-17T04:24:05.194258Z 01O * checking Rd line widths ... OK
2026-03-17T04:24:05.475817Z 01O * checking Rd cross-references ... OK
2026-03-17T04:24:05.984446Z 01O * checking for missing documentation entries ... OK
2026-03-17T04:24:06.209722Z 01O * checking for code/documentation mismatches ... OK
2026-03-17T04:24:07.145926Z 01O * checking Rd \usage sections ... OK
2026-03-17T04:24:08.017735Z 01O * checking Rd contents ... OK
2026-03-17T04:24:08.468700Z 01O * checking for unstated dependencies in examples ... OK
2026-03-17T04:24:08.937928Z 01O * checking line endings in shell scripts ... OK
2026-03-17T04:24:08.938502Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-03-17T04:24:08.956207Z 01O * checking line endings in Makefiles ... OK
2026-03-17T04:24:08.956779Z 01O * checking compilation flags in Makevars ... OK
2026-03-17T04:24:09.008340Z 01O * checking for GNU extensions in Makefiles ... OK
2026-03-17T04:24:09.009113Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-03-17T04:24:09.010330Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-03-17T04:24:09.014433Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-03-17T04:24:09.020883Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-03-17T04:24:09.040248Z 01O * checking compilation flags used ... OK
2026-03-17T04:24:09.041797Z 01O * checking compiled code ... NOTE
2026-03-17T04:24:09.114123Z 01O File ‘data.table/libs/data_table.so’:
2026-03-17T04:24:09.114124Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-03-17T04:24:09.114125Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-03-17T04:24:09.114126Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-03-17T04:24:09.114709Z 01O 
2026-03-17T04:24:09.114726Z 01O Compiled code should not call non-API entry points in R.
2026-03-17T04:24:09.114727Z 01O 
2026-03-17T04:24:09.114727Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-03-17T04:24:09.114728Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-03-17T04:24:09.114729Z 01O non-API entry points.
2026-03-17T04:24:09.115770Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-03-17T04:24:09.317292Z 01O * checking files in ‘vignettes’ ... OK
2026-03-17T04:24:09.521563Z 01O * checking examples ... OK
2026-03-17T04:24:16.340134Z 01O * checking examples with --run-donttest ... OK
2026-03-17T04:24:25.412987Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-03-17T04:24:25.482558Z 01O * checking tests ...
2026-03-17T04:24:25.626097Z 01E   Running ‘autoprint.R’
2026-03-17T04:24:25.869083Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-03-17T04:24:25.876681Z 01E   Running ‘froll.R’ [420s/403s]
2026-03-17T04:31:08.732560Z 01E   Running ‘litedown.R’
2026-03-17T04:31:09.031231Z 01E   Running ‘main.R’ [45s/41s]
2026-03-17T04:31:49.850553Z 01E   Running ‘mergelist.R’
2026-03-17T04:31:51.382684Z 01E   Running ‘nafill.R’
2026-03-17T04:31:51.857871Z 01E   Running ‘optimize.R’
2026-03-17T04:31:53.161165Z 01E   Running ‘other.R’
2026-03-17T04:31:53.368828Z 01E   Running ‘programming.R’
2026-03-17T04:31:53.937138Z 01E   Running ‘S4.R’
2026-03-17T04:31:54.240058Z 01E   Running ‘types.R’
2026-03-17T04:31:54.477303Z 01O  [471s/449s] OK
2026-03-17T04:31:54.566894Z 01O * checking for unstated dependencies in vignettes ... OK
2026-03-17T04:31:54.833845Z 01O * checking package vignettes ... OK
2026-03-17T04:31:55.525105Z 01O * checking re-building of vignette outputs ... [28s/29s] OK
2026-03-17T04:32:24.273879Z 01O * checking PDF version of manual ... OK
2026-03-17T04:32:30.112360Z 01O * checking HTML version of manual ... OK
2026-03-17T04:32:33.599308Z 01O * checking for non-standard things in the check directory ... OK
2026-03-17T04:32:33.599833Z 01O * checking for detritus in the temp directory ... OK
2026-03-17T04:32:33.600497Z 01O * DONE
2026-03-17T04:32:33.600936Z 01E 
2026-03-17T04:32:33.600972Z 01O Status: 1 NOTE
2026-03-17T04:32:33.601128Z 01E See
2026-03-17T04:32:33.601129Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-03-17T04:32:33.601130Z 01E for details.
2026-03-17T04:32:33.601220Z 01E 
2026-03-17T04:32:33.949062Z 00O section_end:1773721953:step_script
2026-03-17T04:32:33.949070Z 00O+section_start:1773721953:after_script
2026-03-17T04:32:33.949454Z 00O+Running after_script
2026-03-17T04:32:34.279386Z 01O Running after script...
2026-03-17T04:32:34.279407Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-03-17T04:32:34.280728Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-03-17T04:32:34.280735Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-03-17T04:32:34.280834Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-03-17T04:32:34.280956Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-03-17T04:32:34.447141Z 00O section_end:1773721954:after_script
2026-03-17T04:32:34.447144Z 00O+section_start:1773721954:upload_artifacts_on_success
2026-03-17T04:32:34.447856Z 00O+Uploading artifacts for successful job
2026-03-17T04:32:34.848684Z 01O Uploading artifacts...
2026-03-17T04:32:34.925334Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-03-17T04:32:37.235290Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=879410c3be2644c69246ba4d98fffb84 id=13520321989 responseStatus=201 Created token=6d_xvoxsw
2026-03-17T04:32:37.410139Z 00O section_end:1773721957:upload_artifacts_on_success
2026-03-17T04:32:37.410152Z 00O+section_start:1773721957:cleanup_file_variables
2026-03-17T04:32:37.410230Z 00O+Cleaning up project directory and file based variables
2026-03-17T04:32:37.905306Z 00O section_end:1773721957:cleanup_file_variables
2026-03-17T04:32:37.905310Z 00O+
2026-03-17T04:32:37.942681Z 00O Job succeeded