2026-10-16T04:20:59.932529Z 00O Running with gitlab-runner 19.5.0~pre.2326.gc76cd792 (c76cd792)
2026-10-16T04:20:59.932564Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_LceY4TJfFVc7
2026-10-16T04:20:59.932567Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-16T04:20:59.932580Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-16T04:20:59.932624Z 00O Resolving secrets
2026-10-16T04:20:59.932918Z 00O section_start:1792124459:prepare_executor

2026-10-16T04:20:59.932925Z 00O+Preparing the "docker+machine" executor
2026-10-16T04:21:00.027952Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-10-16T04:21:00.028000Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-16T04:21:00.028010Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792
2026-10-16T04:21:00.028943Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-16T04:21:00.028951Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792 ...
2026-10-16T04:21:01.501483Z 00O Using docker image sha256:291b835267c62bbfe0ac2d5f77efe9bc330c064f6899dc0b5be396cd23371b5f for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:68ca0940c4c9ae6d9bfaf2789a663ebebc0f5e525b110d5ff3e5bab113a816e0 ...
2026-10-16T04:21:03.172376Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-16T04:21:03.172397Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792
2026-10-16T04:21:03.173648Z 00O Using docker image sha256:291b835267c62bbfe0ac2d5f77efe9bc330c064f6899dc0b5be396cd23371b5f for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:68ca0940c4c9ae6d9bfaf2789a663ebebc0f5e525b110d5ff3e5bab113a816e0 ...
2026-10-16T04:21:03.173663Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-10-16T04:21:03.174486Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-16T04:21:03.174497Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-10-16T04:21:13.691541Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-10-16T04:21:13.691656Z 00O section_end:1792124473:prepare_executor

2026-10-16T04:21:13.691795Z 00O+section_start:1792124473:prepare_script

2026-10-16T04:21:13.691801Z 00O+Preparing environment
2026-10-16T04:21:13.691841Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.5.0 )
2026-10-16T04:21:13.691855Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792
2026-10-16T04:21:13.692894Z 00O Using docker image sha256:291b835267c62bbfe0ac2d5f77efe9bc330c064f6899dc0b5be396cd23371b5f for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-c76cd792 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:68ca0940c4c9ae6d9bfaf2789a663ebebc0f5e525b110d5ff3e5bab113a816e0 ...
2026-10-16T04:21:13.692911Z 00O Using effective pull policy of [always] for container sha256:291b835267c62bbfe0ac2d5f77efe9bc330c064f6899dc0b5be396cd23371b5f
2026-10-16T04:21:22.811902Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1792124369-7a1468a5...
2026-10-16T04:21:22.814837Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-16T04:21:22.961890Z 00O section_end:1792124482:prepare_script

2026-10-16T04:21:22.962398Z 00O+section_start:1792124482:get_sources

2026-10-16T04:21:22.962405Z 00O+Getting source from Git repository
2026-10-16T04:21:23.293488Z 01O Gitaly correlation ID: bbc28558d56f4b3b8f53336f37bd0783
2026-10-16T04:21:23.299887Z 01O Fetching changes...
2026-10-16T04:21:23.303400Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-16T04:21:23.305907Z 01O Created fresh repository.
2026-10-16T04:21:28.911261Z 01O Checking out df59dd63 as detached HEAD (ref is master)...
2026-10-16T04:21:29.088920Z 01O 
2026-10-16T04:21:29.088929Z 01O Skipping Git submodules setup
2026-10-16T04:21:29.088938Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-16T04:21:29.277102Z 00O section_end:1792124489:get_sources

2026-10-16T04:21:29.277748Z 00O+section_start:1792124489:download_artifacts

2026-10-16T04:21:29.277756Z 00O+Downloading artifacts
2026-10-16T04:21:29.626234Z 01O Downloading artifacts for build (17221684172)...
2026-10-16T04:21:29.847423Z 01E Direct download from storage.googleapis.com         correlation_id=61bf1d3dc6554dfb95559d10fab36ec3 id=17221684172 status=302 token=74_hFpmz3
2026-10-16T04:21:30.073596Z 01E Downloading artifacts from coordinator... ok        correlation_id=61bf1d3dc6554dfb95559d10fab36ec3 id=17221684172 status=302 token=74_hFpmz3
2026-10-16T04:21:30.081840Z 01O Downloading artifacts for mirror-packages (17221684171)...
2026-10-16T04:21:30.269133Z 01E Direct download from storage.googleapis.com         correlation_id=a3ee16085b514a28b2e5f9af177c6c04 id=17221684171 status=302 token=74_hFpmz3
2026-10-16T04:21:30.854154Z 01E Downloading artifacts from coordinator... ok        correlation_id=a3ee16085b514a28b2e5f9af177c6c04 id=17221684171 status=302 token=74_hFpmz3
2026-10-16T04:21:31.936368Z 00O section_end:1792124491:download_artifacts

2026-10-16T04:21:31.936785Z 00O+section_start:1792124491:step_script

2026-10-16T04:21:31.936797Z 00O+Executing "step_script" stage of the job script
2026-10-16T04:21:31.936807Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-10-16T04:21:31.937921Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-10-16T04:21:32.257871Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-16T04:21:32.264541Z 01O $ mkdir -p ~/.R
2026-10-16T04:21:32.265615Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-10-16T04:21:32.466508Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-10-16T04:21:32.466517Z 01E 
2026-10-16T04:22:32.617204Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-16T04:22:32.617212Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-16T04:22:32.617220Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-10-16T04:22:32.781019Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-10-16T04:22:32.781033Z 01O * using R version 4.5.0 (2025-04-11)
2026-10-16T04:22:32.781194Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-16T04:22:32.781303Z 01O * R was compiled by
2026-10-16T04:22:32.781321Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-10-16T04:22:32.781322Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-10-16T04:22:32.781513Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-10-16T04:22:32.781769Z 01O * using session charset: UTF-8
2026-10-16T04:22:33.439171Z 01O * using option ‘--as-cran’
2026-10-16T04:22:33.439330Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-10-16T04:22:33.441902Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-10-16T04:22:33.442226Z 01O * package encoding: UTF-8
2026-10-16T04:22:33.442276Z 01O * checking CRAN incoming feasibility ... OK
2026-10-16T04:22:33.975266Z 01O * checking package namespace information ... OK
2026-10-16T04:22:33.982942Z 01O * checking package dependencies ... OK
2026-10-16T04:22:35.239635Z 01O * checking if this is a source package ... OK
2026-10-16T04:22:35.241845Z 01O * checking if there is a namespace ... OK
2026-10-16T04:22:35.245471Z 01O * checking for .dll and .exe files ... OK
2026-10-16T04:22:35.245796Z 01O * checking for hidden files and directories ... OK
2026-10-16T04:22:35.247486Z 01O * checking for portable file names ... OK
2026-10-16T04:22:35.251263Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-16T04:22:35.255048Z 01O * checking whether package ‘data.table’ can be installed ... [23s/23s] OK
2026-10-16T04:22:58.362497Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-10-16T04:22:58.362786Z 01O * checking installed package size ... OK
2026-10-16T04:22:58.376116Z 01O * checking package directory ... OK
2026-10-16T04:22:58.376350Z 01O * checking for future file timestamps ... OK
2026-10-16T04:22:58.376754Z 01O * checking ‘build’ directory ... OK
2026-10-16T04:22:58.377537Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-16T04:22:59.166344Z 01O * checking top-level files ... OK
2026-10-16T04:23:00.570336Z 01O * checking for left-over files ... OK
2026-10-16T04:23:00.572898Z 01O * checking index information ... OK
2026-10-16T04:23:00.725473Z 01O * checking package subdirectories ... OK
2026-10-16T04:23:01.058957Z 01O * checking code files for non-ASCII characters ... OK
2026-10-16T04:23:01.102986Z 01O * checking R files for syntax errors ... OK
2026-10-16T04:23:01.174792Z 01O * checking whether the package can be loaded ... OK
2026-10-16T04:23:01.357792Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-16T04:23:01.502110Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-16T04:23:01.648206Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-16T04:23:01.797762Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-16T04:23:01.983921Z 01O * checking loading without being on the library search path ... OK
2026-10-16T04:23:02.351735Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-16T04:23:02.533493Z 01O * checking use of S3 registration ... OK
2026-10-16T04:23:03.468125Z 01O * checking dependencies in R code ... OK
2026-10-16T04:23:04.179020Z 01O * checking S3 generic/method consistency ... OK
2026-10-16T04:23:04.507809Z 01O * checking replacement functions ... OK
2026-10-16T04:23:04.685399Z 01O * checking foreign function calls ... OK
2026-10-16T04:23:05.368719Z 01O * checking R code for possible problems ... [14s/14s] OK
2026-10-16T04:23:19.516900Z 01O * checking Rd files ... OK
2026-10-16T04:23:20.052663Z 01O * checking Rd metadata ... OK
2026-10-16T04:23:20.091393Z 01O * checking Rd line widths ... OK
2026-10-16T04:23:20.369011Z 01O * checking Rd cross-references ... OK
2026-10-16T04:23:20.999084Z 01O * checking for missing documentation entries ... OK
2026-10-16T04:23:21.214355Z 01O * checking for code/documentation mismatches ... OK
2026-10-16T04:23:22.128163Z 01O * checking Rd \usage sections ... OK
2026-10-16T04:23:22.966853Z 01O * checking Rd contents ... OK
2026-10-16T04:23:23.373557Z 01O * checking for unstated dependencies in examples ... OK
2026-10-16T04:23:23.791894Z 01O * checking line endings in shell scripts ... OK
2026-10-16T04:23:23.792352Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-16T04:23:23.812099Z 01O * checking line endings in Makefiles ... OK
2026-10-16T04:23:23.812453Z 01O * checking compilation flags in Makevars ... OK
2026-10-16T04:23:23.862025Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-16T04:23:23.862534Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-16T04:23:23.863668Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-16T04:23:23.866145Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-10-16T04:23:23.870362Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-10-16T04:23:23.890506Z 01O * checking compilation flags used ... OK
2026-10-16T04:23:23.891902Z 01O * checking compiled code ... NOTE
2026-10-16T04:23:23.962177Z 01O File ‘data.table/libs/data.table.so’:
2026-10-16T04:23:23.962180Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-10-16T04:23:23.962182Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-10-16T04:23:23.962183Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-10-16T04:23:23.962720Z 01O 
2026-10-16T04:23:23.962727Z 01O Compiled code should not call non-API entry points in R.
2026-10-16T04:23:23.962729Z 01O 
2026-10-16T04:23:23.962729Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-10-16T04:23:23.962732Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-10-16T04:23:23.962733Z 01O non-API entry points.
2026-10-16T04:23:23.963643Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-10-16T04:23:24.146294Z 01O * checking files in ‘vignettes’ ... OK
2026-10-16T04:23:24.331111Z 01O * checking examples ... OK
2026-10-16T04:23:30.514139Z 01O * checking examples with --run-donttest ... OK
2026-10-16T04:23:39.140214Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-10-16T04:23:39.200185Z 01O * checking tests ...
2026-10-16T04:23:39.336305Z 01E   Running ‘autoprint.R’
2026-10-16T04:23:39.558082Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-10-16T04:23:39.564237Z 01E   Running ‘froll.R’ [432s/416s]
2026-10-16T04:30:36.041701Z 01E   Running ‘litedown.R’
2026-10-16T04:30:36.319824Z 01E   Running ‘main.R’ [45s/42s]
2026-10-16T04:31:18.172865Z 01E   Running ‘mergelist.R’
2026-10-16T04:31:19.596243Z 01E   Running ‘nafill.R’
2026-10-16T04:31:20.054208Z 01E   Running ‘optimize.R’
2026-10-16T04:31:21.304107Z 01E   Running ‘other.R’
2026-10-16T04:31:21.495800Z 01E   Running ‘programming.R’
2026-10-16T04:31:22.033603Z 01E   Running ‘S4.R’
2026-10-16T04:31:22.327536Z 01E   Running ‘self.R’
2026-10-16T04:31:22.538884Z 01E   Running ‘types.R’
2026-10-16T04:31:22.762720Z 01O  [484s/464s] OK
2026-10-16T04:31:22.837374Z 01O * checking for unstated dependencies in vignettes ... OK
2026-10-16T04:31:23.089915Z 01O * checking package vignettes ... OK
2026-10-16T04:31:23.750290Z 01O * checking re-building of vignette outputs ... [28s/28s] OK
2026-10-16T04:31:52.187979Z 01O * checking PDF version of manual ... OK
2026-10-16T04:31:57.649560Z 01O * checking HTML version of manual ... OK
2026-10-16T04:32:00.309973Z 01O * checking for non-standard things in the check directory ... OK
2026-10-16T04:32:00.310334Z 01O * checking for detritus in the temp directory ... OK
2026-10-16T04:32:00.310933Z 01O * DONE
2026-10-16T04:32:00.311225Z 01E 
2026-10-16T04:32:00.311316Z 01O Status: 1 NOTE
2026-10-16T04:32:00.311524Z 01E See
2026-10-16T04:32:00.311526Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-10-16T04:32:00.311527Z 01E for details.
2026-10-16T04:32:00.311531Z 01E 
2026-10-16T04:32:00.618408Z 00O section_end:1792125120:step_script

2026-10-16T04:32:00.618929Z 00O+section_start:1792125120:after_script

2026-10-16T04:32:00.618937Z 00O+Running after_script
2026-10-16T04:32:00.918925Z 01O Running after script...
2026-10-16T04:32:00.918955Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-16T04:32:00.920020Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-16T04:32:00.920027Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-16T04:32:00.920118Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-16T04:32:00.920119Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-16T04:32:01.070944Z 00O section_end:1792125121:after_script

2026-10-16T04:32:01.071670Z 00O+section_start:1792125121:upload_artifacts_on_success

2026-10-16T04:32:01.071677Z 00O+Uploading artifacts for successful job
2026-10-16T04:32:01.418474Z 01O Uploading artifacts...
2026-10-16T04:32:01.470080Z 01E bus/test-lin-rel-cran: found 720 matching artifact files and directories 
2026-10-16T04:32:02.689980Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=c1836e16144643a7b4154d282daf76f3 id=17221684175 status=201 token=74_hFpmz3
2026-10-16T04:32:02.843290Z 00O section_end:1792125122:upload_artifacts_on_success

2026-10-16T04:32:02.845172Z 00O+section_start:1792125122:cleanup_file_variables

2026-10-16T04:32:02.845185Z 00O+Cleaning up project directory and file based variables
2026-10-16T04:32:03.318579Z 00O section_end:1792125123:cleanup_file_variables

2026-10-16T04:32:03.347375Z 00O Job succeeded