2026-02-15T04:25:58.691592Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2026-02-15T04:25:58.691605Z 00O   on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b
2026-02-15T04:25:58.691623Z 00O Resolving secrets
2026-02-15T04:25:58.691744Z 00O section_start:1771129558:prepare_executor
2026-02-15T04:25:58.691745Z 00O+Preparing the "docker+machine" executor
2026-02-15T04:25:58.826461Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-02-15T04:26:03.147189Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-02-15T04:26:03.147773Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-02-15T04:26:03.147782Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-02-15T04:26:15.023706Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-02-15T04:26:15.023774Z 00O section_end:1771129575:prepare_executor
2026-02-15T04:26:15.023776Z 00O+section_start:1771129575:prepare_script
2026-02-15T04:26:15.023844Z 00O+Preparing environment
2026-02-15T04:26:15.024538Z 00O Using effective pull policy of [always] for container sha256:c008b7a982b639231e35b20671da847e270038a6318900dc2d469f42be6a21bb
2026-02-15T04:26:26.076404Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1771129406-c8edf962...
2026-02-15T04:26:26.258684Z 00O section_end:1771129586:prepare_script
2026-02-15T04:26:26.258690Z 00O+section_start:1771129586:get_sources
2026-02-15T04:26:26.259229Z 00O+Getting source from Git repository
2026-02-15T04:26:26.644765Z 01O Gitaly correlation ID: a1d6564c49c649ca88574bac55d941f1
2026-02-15T04:26:26.650929Z 01O Fetching changes...
2026-02-15T04:26:26.654320Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-02-15T04:26:26.656895Z 01O Created fresh repository.
2026-02-15T04:26:32.254909Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)...
2026-02-15T04:26:32.452968Z 01O 
2026-02-15T04:26:32.452971Z 01O Skipping Git submodules setup
2026-02-15T04:26:32.452972Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-02-15T04:26:32.695841Z 00O section_end:1771129592:get_sources
2026-02-15T04:26:32.695849Z 00O+section_start:1771129592:download_artifacts
2026-02-15T04:26:32.696549Z 00O+Downloading artifacts
2026-02-15T04:26:33.115040Z 01O Downloading artifacts for mirror-packages (13120362981)...
2026-02-15T04:26:34.103809Z 01E Downloading artifacts from coordinator... ok        correlation_id=37f736454a1147babaaf68abebda2394 host=storage.googleapis.com id=13120362981 responseStatus=200 OK token=6c_N5qHyd
2026-02-15T04:26:34.335260Z 01O Downloading artifacts for build (13120362982)...
2026-02-15T04:26:34.789167Z 01E Downloading artifacts from coordinator... ok        correlation_id=8a8e13396c58407e984e0368ee67cfb7 host=storage.googleapis.com id=13120362982 responseStatus=200 OK token=6c_N5qHyd
2026-02-15T04:26:35.497149Z 00O section_end:1771129595:download_artifacts
2026-02-15T04:26:35.497156Z 00O+section_start:1771129595:step_script
2026-02-15T04:26:35.497546Z 00O+Executing "step_script" stage of the job script
2026-02-15T04:26:35.497565Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-02-15T04:26:35.498549Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-02-15T04:26:35.875982Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-02-15T04:26:35.885503Z 01O $ mkdir -p ~/.R
2026-02-15T04:26:35.886890Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-02-15T04:26:36.118551Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-02-15T04:26:36.118560Z 01E 
2026-02-15T04:27:44.896332Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-02-15T04:27:44.896351Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-02-15T04:27:44.896353Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-02-15T04:27:45.087651Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-02-15T04:27:45.087787Z 01O * using R version 4.5.0 (2025-04-11)
2026-02-15T04:27:45.088026Z 01O * using platform: x86_64-pc-linux-gnu
2026-02-15T04:27:45.088225Z 01O * R was compiled by
2026-02-15T04:27:45.088513Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-02-15T04:27:45.088514Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-02-15T04:27:45.088576Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-02-15T04:27:45.088904Z 01O * using session charset: UTF-8
2026-02-15T04:27:45.875022Z 01O * using option ‘--as-cran’
2026-02-15T04:27:45.875232Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-02-15T04:27:45.878567Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-02-15T04:27:45.878750Z 01O * package encoding: UTF-8
2026-02-15T04:27:45.879090Z 01O * checking CRAN incoming feasibility ... OK
2026-02-15T04:27:46.465368Z 01O * checking package namespace information ... OK
2026-02-15T04:27:46.473148Z 01O * checking package dependencies ... OK
2026-02-15T04:27:47.488549Z 01O * checking if this is a source package ... OK
2026-02-15T04:27:47.491618Z 01O * checking if there is a namespace ... OK
2026-02-15T04:27:47.496164Z 01O * checking for .dll and .exe files ... OK
2026-02-15T04:27:47.496642Z 01O * checking for hidden files and directories ... OK
2026-02-15T04:27:47.499538Z 01O * checking for portable file names ... OK
2026-02-15T04:27:47.504089Z 01O * checking for sufficient/correct file permissions ... OK
2026-02-15T04:27:47.508201Z 01O * checking whether package ‘data.table’ can be installed ... [25s/25s] OK
2026-02-15T04:28:12.871533Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-02-15T04:28:12.872334Z 01O * checking installed package size ... OK
2026-02-15T04:28:12.890344Z 01O * checking package directory ... OK
2026-02-15T04:28:12.890867Z 01O * checking for future file timestamps ... OK
2026-02-15T04:28:12.891545Z 01O * checking ‘build’ directory ... OK
2026-02-15T04:28:12.892486Z 01O * checking DESCRIPTION meta-information ... OK
2026-02-15T04:28:13.777469Z 01O * checking top-level files ... OK
2026-02-15T04:28:15.405494Z 01O * checking for left-over files ... OK
2026-02-15T04:28:15.409035Z 01O * checking index information ... OK
2026-02-15T04:28:15.587078Z 01O * checking package subdirectories ... OK
2026-02-15T04:28:15.976232Z 01O * checking code files for non-ASCII characters ... OK
2026-02-15T04:28:16.026442Z 01O * checking R files for syntax errors ... OK
2026-02-15T04:28:16.108741Z 01O * checking whether the package can be loaded ... OK
2026-02-15T04:28:16.312622Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-02-15T04:28:16.473102Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-02-15T04:28:16.637312Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-02-15T04:28:16.799161Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-02-15T04:28:17.019188Z 01O * checking loading without being on the library search path ... OK
2026-02-15T04:28:17.438659Z 01O * checking whether startup messages can be suppressed ... OK
2026-02-15T04:28:17.641028Z 01O * checking use of S3 registration ... OK
2026-02-15T04:28:18.661737Z 01O * checking dependencies in R code ... OK
2026-02-15T04:28:19.616791Z 01O * checking S3 generic/method consistency ... OK
2026-02-15T04:28:19.985975Z 01O * checking replacement functions ... OK
2026-02-15T04:28:20.193801Z 01O * checking foreign function calls ... OK
2026-02-15T04:28:20.991456Z 01O * checking R code for possible problems ... [17s/17s] OK
2026-02-15T04:28:37.848647Z 01O * checking Rd files ... OK
2026-02-15T04:28:38.461549Z 01O * checking Rd metadata ... OK
2026-02-15T04:28:38.503671Z 01O * checking Rd line widths ... OK
2026-02-15T04:28:38.824629Z 01O * checking Rd cross-references ... OK
2026-02-15T04:28:39.457624Z 01O * checking for missing documentation entries ... OK
2026-02-15T04:28:39.694219Z 01O * checking for code/documentation mismatches ... OK
2026-02-15T04:28:40.712425Z 01O * checking Rd \usage sections ... OK
2026-02-15T04:28:41.703007Z 01O * checking Rd contents ... OK
2026-02-15T04:28:42.166694Z 01O * checking for unstated dependencies in examples ... OK
2026-02-15T04:28:42.691987Z 01O * checking line endings in shell scripts ... OK
2026-02-15T04:28:42.692723Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-02-15T04:28:42.713155Z 01O * checking line endings in Makefiles ... OK
2026-02-15T04:28:42.713744Z 01O * checking compilation flags in Makevars ... OK
2026-02-15T04:28:42.771002Z 01O * checking for GNU extensions in Makefiles ... OK
2026-02-15T04:28:42.772034Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-02-15T04:28:42.773654Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-02-15T04:28:42.777772Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-02-15T04:28:42.785056Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-02-15T04:28:42.812150Z 01O * checking compilation flags used ... OK
2026-02-15T04:28:42.814074Z 01O * checking compiled code ... NOTE
2026-02-15T04:28:42.897604Z 01O File ‘data.table/libs/data_table.so’:
2026-02-15T04:28:42.897606Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘SETLENGTH’,
2026-02-15T04:28:42.897607Z 01O     ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-02-15T04:28:42.898270Z 01O 
2026-02-15T04:28:42.898271Z 01O Compiled code should not call non-API entry points in R.
2026-02-15T04:28:42.898307Z 01O 
2026-02-15T04:28:42.898308Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-02-15T04:28:42.898309Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-02-15T04:28:42.898310Z 01O non-API entry points.
2026-02-15T04:28:42.899603Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-02-15T04:28:43.111980Z 01O * checking files in ‘vignettes’ ... OK
2026-02-15T04:28:43.327682Z 01O * checking examples ... OK
2026-02-15T04:28:51.336302Z 01O * checking examples with --run-donttest ... OK
2026-02-15T04:29:01.700374Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-02-15T04:29:01.768001Z 01O * checking tests ...
2026-02-15T04:29:01.914222Z 01E   Running ‘autoprint.R’
2026-02-15T04:29:02.153053Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-02-15T04:29:02.159939Z 01E   Running ‘froll.R’ [461s/440s]
2026-02-15T04:36:22.228739Z 01E   Running ‘litedown.R’
2026-02-15T04:36:22.543154Z 01E   Running ‘main.R’ [48s/44s]
2026-02-15T04:37:06.872061Z 01E   Running ‘mergelist.R’
2026-02-15T04:37:08.464451Z 01E   Running ‘nafill.R’
2026-02-15T04:37:08.973627Z 01E   Running ‘optimize.R’
2026-02-15T04:37:10.422329Z 01E   Running ‘other.R’
2026-02-15T04:37:10.647123Z 01E   Running ‘programming.R’
2026-02-15T04:37:11.257059Z 01E   Running ‘S4.R’
2026-02-15T04:37:11.573066Z 01E   Running ‘types.R’
2026-02-15T04:37:11.821067Z 01O  [516s/490s] OK
2026-02-15T04:37:11.923756Z 01O * checking for unstated dependencies in vignettes ... OK
2026-02-15T04:37:12.212337Z 01O * checking package vignettes ... OK
2026-02-15T04:37:13.035551Z 01O * checking re-building of vignette outputs ... [29s/30s] OK
2026-02-15T04:37:42.863446Z 01O * checking PDF version of manual ... OK
2026-02-15T04:37:48.802905Z 01O * checking HTML version of manual ... OK
2026-02-15T04:37:51.911149Z 01O * checking for non-standard things in the check directory ... OK
2026-02-15T04:37:51.911845Z 01O * checking for detritus in the temp directory ... OK
2026-02-15T04:37:51.912555Z 01O * DONE
2026-02-15T04:37:51.913069Z 01E 
2026-02-15T04:37:51.913102Z 01O Status: 1 NOTE
2026-02-15T04:37:51.913311Z 01E See
2026-02-15T04:37:51.913312Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-02-15T04:37:51.913314Z 01E for details.
2026-02-15T04:37:51.913433Z 01E 
2026-02-15T04:37:52.280610Z 00O section_end:1771130272:step_script
2026-02-15T04:37:52.280617Z 00O+section_start:1771130272:after_script
2026-02-15T04:37:52.280999Z 00O+Running after_script
2026-02-15T04:37:52.644834Z 01O Running after script...
2026-02-15T04:37:52.644861Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-02-15T04:37:52.646099Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-02-15T04:37:52.646179Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-02-15T04:37:52.646273Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-02-15T04:37:52.646276Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-02-15T04:37:52.819407Z 00O section_end:1771130272:after_script
2026-02-15T04:37:52.819411Z 00O+section_start:1771130272:upload_artifacts_on_success
2026-02-15T04:37:52.820125Z 00O+Uploading artifacts for successful job
2026-02-15T04:37:53.234429Z 01O Uploading artifacts...
2026-02-15T04:37:53.298921Z 01E bus/test-lin-rel-cran: found 712 matching artifact files and directories 
2026-02-15T04:37:57.201981Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=95f5f62105a34b3185e8c565292a5bb6 id=13120362985 responseStatus=201 Created token=6c_N5qHyd
2026-02-15T04:37:57.381437Z 00O section_end:1771130277:upload_artifacts_on_success
2026-02-15T04:37:57.381442Z 00O+section_start:1771130277:cleanup_file_variables
2026-02-15T04:37:57.381528Z 00O+Cleaning up project directory and file based variables
2026-02-15T04:37:57.905126Z 00O section_end:1771130277:cleanup_file_variables
2026-02-15T04:37:57.905130Z 00O+
2026-02-15T04:37:57.944703Z 00O Job succeeded