2026-01-30T04:22:16.709438Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2026-01-30T04:22:16.709449Z 00O   on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586
2026-01-30T04:22:16.709468Z 00O Resolving secrets
2026-01-30T04:22:16.709616Z 00O section_start:1769746936:prepare_executor
2026-01-30T04:22:16.709618Z 00O+Preparing the "docker+machine" executor
2026-01-30T04:22:16.844225Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-01-30T04:22:21.207815Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-01-30T04:22:21.208359Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-01-30T04:22:21.208368Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-01-30T04:22:33.323847Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-01-30T04:22:33.323914Z 00O section_end:1769746953:prepare_executor
2026-01-30T04:22:33.323915Z 00O+section_start:1769746953:prepare_script
2026-01-30T04:22:33.323987Z 00O+Preparing environment
2026-01-30T04:22:33.325007Z 00O Using effective pull policy of [always] for container sha256:e6dcb050cf5b33486e6e42894ccb620c4a86cf40fa46bbbf1052d9eadd4605e9
2026-01-30T04:22:44.395419Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1769746619-21cf3a6b...
2026-01-30T04:22:44.566840Z 00O section_end:1769746964:prepare_script
2026-01-30T04:22:44.566846Z 00O+section_start:1769746964:get_sources
2026-01-30T04:22:44.567349Z 00O+Getting source from Git repository
2026-01-30T04:22:44.965769Z 01O Gitaly correlation ID: 3d02cc149dd843e1910425f59a4addaa
2026-01-30T04:22:44.971730Z 01O Fetching changes...
2026-01-30T04:22:44.976088Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-01-30T04:22:44.978850Z 01O Created fresh repository.
2026-01-30T04:22:50.588686Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)...
2026-01-30T04:22:50.784587Z 01O 
2026-01-30T04:22:50.784595Z 01O Skipping Git submodules setup
2026-01-30T04:22:50.784597Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-01-30T04:22:51.030164Z 00O section_end:1769746971:get_sources
2026-01-30T04:22:51.030171Z 00O+section_start:1769746971:download_artifacts
2026-01-30T04:22:51.030848Z 00O+Downloading artifacts
2026-01-30T04:22:51.452078Z 01O Downloading artifacts for build (12923844881)...
2026-01-30T04:22:51.836235Z 01E Downloading artifacts from coordinator... ok        correlation_id=1a3f6370a59d4e75b362f59b658463fe host=storage.googleapis.com id=12923844881 responseStatus=200 OK token=6c_SBundg
2026-01-30T04:22:51.853730Z 01O Downloading artifacts for mirror-packages (12923844875)...
2026-01-30T04:22:52.702623Z 01E Downloading artifacts from coordinator... ok        correlation_id=bf9f0f3c95f8491a9f097a84d0b291ce host=storage.googleapis.com id=12923844875 responseStatus=200 OK token=6c_SBundg
2026-01-30T04:22:53.627574Z 00O section_end:1769746973:download_artifacts
2026-01-30T04:22:53.627579Z 00O+section_start:1769746973:step_script
2026-01-30T04:22:53.627984Z 00O+Executing "step_script" stage of the job script
2026-01-30T04:22:53.628003Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-01-30T04:22:53.628796Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-01-30T04:22:54.012592Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-01-30T04:22:54.022160Z 01O $ mkdir -p ~/.R
2026-01-30T04:22:54.023802Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-01-30T04:22:54.253402Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-01-30T04:22:54.253407Z 01E 
2026-01-30T04:24:03.141471Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-01-30T04:24:03.141481Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-01-30T04:24:03.141489Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-01-30T04:24:03.323986Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-01-30T04:24:03.324171Z 01O * using R version 4.5.0 (2025-04-11)
2026-01-30T04:24:03.324427Z 01O * using platform: x86_64-pc-linux-gnu
2026-01-30T04:24:03.324649Z 01O * R was compiled by
2026-01-30T04:24:03.324809Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-01-30T04:24:03.324809Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-01-30T04:24:03.325024Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-01-30T04:24:03.325274Z 01O * using session charset: UTF-8
2026-01-30T04:24:04.074536Z 01O * using option ‘--as-cran’
2026-01-30T04:24:04.074860Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-01-30T04:24:04.077389Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-01-30T04:24:04.077613Z 01O * package encoding: UTF-8
2026-01-30T04:24:04.077854Z 01O * checking CRAN incoming feasibility ... OK
2026-01-30T04:24:04.652269Z 01O * checking package namespace information ... OK
2026-01-30T04:24:04.660703Z 01O * checking package dependencies ... OK
2026-01-30T04:24:05.675351Z 01O * checking if this is a source package ... OK
2026-01-30T04:24:05.678440Z 01O * checking if there is a namespace ... OK
2026-01-30T04:24:05.682648Z 01O * checking for .dll and .exe files ... OK
2026-01-30T04:24:05.683200Z 01O * checking for hidden files and directories ... OK
2026-01-30T04:24:05.686008Z 01O * checking for portable file names ... OK
2026-01-30T04:24:05.690378Z 01O * checking for sufficient/correct file permissions ... OK
2026-01-30T04:24:05.694557Z 01O * checking whether package ‘data.table’ can be installed ... [25s/25s] OK
2026-01-30T04:24:30.911103Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-01-30T04:24:30.911388Z 01O * checking installed package size ... OK
2026-01-30T04:24:30.928288Z 01O * checking package directory ... OK
2026-01-30T04:24:30.928647Z 01O * checking for future file timestamps ... OK
2026-01-30T04:24:30.929250Z 01O * checking ‘build’ directory ... OK
2026-01-30T04:24:30.930106Z 01O * checking DESCRIPTION meta-information ... OK
2026-01-30T04:24:31.801589Z 01O * checking top-level files ... OK
2026-01-30T04:24:33.418296Z 01O * checking for left-over files ... OK
2026-01-30T04:24:33.421652Z 01O * checking index information ... OK
2026-01-30T04:24:33.596143Z 01O * checking package subdirectories ... OK
2026-01-30T04:24:33.989007Z 01O * checking code files for non-ASCII characters ... OK
2026-01-30T04:24:34.043333Z 01O * checking R files for syntax errors ... OK
2026-01-30T04:24:34.124351Z 01O * checking whether the package can be loaded ... OK
2026-01-30T04:24:34.332740Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-01-30T04:24:34.493463Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-01-30T04:24:34.655709Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-01-30T04:24:34.823596Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-01-30T04:24:35.043274Z 01O * checking loading without being on the library search path ... OK
2026-01-30T04:24:35.460038Z 01O * checking whether startup messages can be suppressed ... OK
2026-01-30T04:24:35.659263Z 01O * checking use of S3 registration ... OK
2026-01-30T04:24:36.718330Z 01O * checking dependencies in R code ... OK
2026-01-30T04:24:37.623653Z 01O * checking S3 generic/method consistency ... OK
2026-01-30T04:24:37.989142Z 01O * checking replacement functions ... OK
2026-01-30T04:24:38.206235Z 01O * checking foreign function calls ... OK
2026-01-30T04:24:39.038239Z 01O * checking R code for possible problems ... [17s/17s] OK
2026-01-30T04:24:56.236593Z 01O * checking Rd files ... OK
2026-01-30T04:24:56.878280Z 01O * checking Rd metadata ... OK
2026-01-30T04:24:56.924068Z 01O * checking Rd line widths ... OK
2026-01-30T04:24:57.243044Z 01O * checking Rd cross-references ... OK
2026-01-30T04:24:57.871212Z 01O * checking for missing documentation entries ... OK
2026-01-30T04:24:58.113623Z 01O * checking for code/documentation mismatches ... OK
2026-01-30T04:24:59.171886Z 01O * checking Rd \usage sections ... OK
2026-01-30T04:25:00.143503Z 01O * checking Rd contents ... OK
2026-01-30T04:25:00.619647Z 01O * checking for unstated dependencies in examples ... OK
2026-01-30T04:25:01.129392Z 01O * checking line endings in shell scripts ... OK
2026-01-30T04:25:01.129968Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-01-30T04:25:01.148803Z 01O * checking line endings in Makefiles ... OK
2026-01-30T04:25:01.149310Z 01O * checking compilation flags in Makevars ... OK
2026-01-30T04:25:01.208590Z 01O * checking for GNU extensions in Makefiles ... OK
2026-01-30T04:25:01.209473Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-01-30T04:25:01.210747Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-01-30T04:25:01.214729Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-01-30T04:25:01.221382Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-01-30T04:25:01.245519Z 01O * checking compilation flags used ... OK
2026-01-30T04:25:01.247180Z 01O * checking compiled code ... NOTE
2026-01-30T04:25:01.329455Z 01O File ‘data.table/libs/data_table.so’:
2026-01-30T04:25:01.329457Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘SETLENGTH’,
2026-01-30T04:25:01.329458Z 01O     ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-01-30T04:25:01.330244Z 01O 
2026-01-30T04:25:01.330245Z 01O Compiled code should not call non-API entry points in R.
2026-01-30T04:25:01.330277Z 01O 
2026-01-30T04:25:01.330278Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-01-30T04:25:01.330279Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-01-30T04:25:01.330279Z 01O non-API entry points.
2026-01-30T04:25:01.331522Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-01-30T04:25:01.539427Z 01O * checking files in ‘vignettes’ ... OK
2026-01-30T04:25:01.769346Z 01O * checking examples ... OK
2026-01-30T04:25:09.592921Z 01O * checking examples with --run-donttest ... [10s/10s] OK
2026-01-30T04:25:20.257064Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-01-30T04:25:20.332502Z 01O * checking tests ...
2026-01-30T04:25:20.486292Z 01E   Running ‘autoprint.R’
2026-01-30T04:25:20.748446Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-01-30T04:25:20.756955Z 01E   Running ‘froll.R’ [467s/445s]
2026-01-30T04:32:46.004358Z 01E   Running ‘litedown.R’
2026-01-30T04:32:46.346393Z 01E   Running ‘main.R’ [49s/45s]
2026-01-30T04:33:31.164955Z 01E   Running ‘mergelist.R’
2026-01-30T04:33:32.781719Z 01E   Running ‘nafill.R’
2026-01-30T04:33:33.287455Z 01E   Running ‘optimize.R’
2026-01-30T04:33:34.709851Z 01E   Running ‘other.R’
2026-01-30T04:33:34.932586Z 01E   Running ‘programming.R’
2026-01-30T04:33:35.578607Z 01E   Running ‘S4.R’
2026-01-30T04:33:35.911519Z 01E   Running ‘types.R’
2026-01-30T04:33:36.171146Z 01O  [522s/496s] OK
2026-01-30T04:33:36.273947Z 01O * checking for unstated dependencies in vignettes ... OK
2026-01-30T04:33:36.575130Z 01O * checking package vignettes ... OK
2026-01-30T04:33:37.383122Z 01O * checking re-building of vignette outputs ... [29s/30s] OK
2026-01-30T04:34:07.475669Z 01O * checking PDF version of manual ... OK
2026-01-30T04:34:13.571007Z 01O * checking HTML version of manual ... OK
2026-01-30T04:34:16.711747Z 01O * checking for non-standard things in the check directory ... OK
2026-01-30T04:34:16.712358Z 01O * checking for detritus in the temp directory ... OK
2026-01-30T04:34:16.713069Z 01O * DONE
2026-01-30T04:34:16.713545Z 01E 
2026-01-30T04:34:16.713551Z 01O Status: 1 NOTE
2026-01-30T04:34:16.713758Z 01E See
2026-01-30T04:34:16.713759Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-01-30T04:34:16.713761Z 01E for details.
2026-01-30T04:34:16.713829Z 01E 
2026-01-30T04:34:17.079007Z 00O section_end:1769747657:step_script
2026-01-30T04:34:17.079012Z 00O+section_start:1769747657:after_script
2026-01-30T04:34:17.079414Z 00O+Running after_script
2026-01-30T04:34:17.434922Z 01O Running after script...
2026-01-30T04:34:17.434949Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-01-30T04:34:17.436350Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-01-30T04:34:17.436360Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-01-30T04:34:17.436478Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-01-30T04:34:17.436579Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-01-30T04:34:17.605750Z 00O section_end:1769747657:after_script
2026-01-30T04:34:17.605755Z 00O+section_start:1769747657:upload_artifacts_on_success
2026-01-30T04:34:17.606586Z 00O+Uploading artifacts for successful job
2026-01-30T04:34:18.030990Z 01O Uploading artifacts...
2026-01-30T04:34:18.102049Z 01E bus/test-lin-rel-cran: found 712 matching artifact files and directories 
2026-01-30T04:34:20.686077Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=576bf6a31c0044a69405c1f86844786b id=12923844916 responseStatus=201 Created token=6c_SBundg
2026-01-30T04:34:20.874894Z 00O section_end:1769747660:upload_artifacts_on_success
2026-01-30T04:34:20.874902Z 00O+section_start:1769747660:cleanup_file_variables
2026-01-30T04:34:20.874992Z 00O+Cleaning up project directory and file based variables
2026-01-30T04:34:21.404402Z 00O section_end:1769747661:cleanup_file_variables
2026-01-30T04:34:21.404407Z 00O+
2026-01-30T04:34:21.442277Z 00O Job succeeded