2026-05-01T04:21:38.434435Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-05-01T04:21:38.434448Z 00O   on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586
2026-05-01T04:21:38.434453Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-05-01T04:21:38.434469Z 00O Resolving secrets
2026-05-01T04:21:38.434613Z 00O section_start:1777609298:prepare_executor
2026-05-01T04:21:38.434614Z 00O+Preparing the "docker+machine" executor
2026-05-01T04:21:38.555409Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-05-01T04:21:42.476197Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-05-01T04:21:42.476681Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-05-01T04:21:42.476690Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-05-01T04:21:53.611581Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-05-01T04:21:53.611686Z 00O section_end:1777609313:prepare_executor
2026-05-01T04:21:53.611688Z 00O+section_start:1777609313:prepare_script
2026-05-01T04:21:53.611778Z 00O+Preparing environment
2026-05-01T04:21:53.612484Z 00O Using effective pull policy of [always] for container sha256:c59a8773bae9e5178c16af85e4cc7ebf5ccbd0d0e75488697de1615a376192f9
2026-05-01T04:22:04.550668Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1777609244-527d1a6f...
2026-05-01T04:22:04.715426Z 00O section_end:1777609324:prepare_script
2026-05-01T04:22:04.715433Z 00O+section_start:1777609324:get_sources
2026-05-01T04:22:04.715972Z 00O+Getting source from Git repository
2026-05-01T04:22:05.069815Z 01O Gitaly correlation ID: e941b27f381e411195f85c05e7fda7b2
2026-05-01T04:22:05.076004Z 01O Fetching changes...
2026-05-01T04:22:05.079018Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-05-01T04:22:05.081110Z 01O Created fresh repository.
2026-05-01T04:22:10.642604Z 01O Checking out 289a1ec3 as detached HEAD (ref is master)...
2026-05-01T04:22:10.826656Z 01O 
2026-05-01T04:22:10.826661Z 01O Skipping Git submodules setup
2026-05-01T04:22:10.826792Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-05-01T04:22:11.058176Z 00O section_end:1777609331:get_sources
2026-05-01T04:22:11.058184Z 00O+section_start:1777609331:download_artifacts
2026-05-01T04:22:11.058911Z 00O+Downloading artifacts
2026-05-01T04:22:11.446675Z 01O Downloading artifacts for build (14173257970)...
2026-05-01T04:22:11.753821Z 01E Downloading artifacts from coordinator... ok        correlation_id=b6ca8c0b437349f3aef1144f1541f97f host=storage.googleapis.com id=14173257970 responseStatus=200 OK token=6e_S3zy5k
2026-05-01T04:22:11.769688Z 01O Downloading artifacts for mirror-packages (14173257969)...
2026-05-01T04:22:12.794407Z 01E Downloading artifacts from coordinator... ok        correlation_id=6734bb4decef45cba9e962b995ba912c host=storage.googleapis.com id=14173257969 responseStatus=200 OK token=6e_S3zy5k
2026-05-01T04:22:13.818071Z 00O section_end:1777609333:download_artifacts
2026-05-01T04:22:13.818077Z 00O+section_start:1777609333:step_script
2026-05-01T04:22:13.818473Z 00O+Executing "step_script" stage of the job script
2026-05-01T04:22:13.818505Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-05-01T04:22:13.819317Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-05-01T04:22:14.160670Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-05-01T04:22:14.169890Z 01O $ mkdir -p ~/.R
2026-05-01T04:22:14.171312Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-05-01T04:22:14.373078Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-05-01T04:22:14.373090Z 01E 
2026-05-01T04:23:16.515940Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-05-01T04:23:16.515997Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-05-01T04:23:16.516027Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-05-01T04:23:16.677128Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-05-01T04:23:16.677310Z 01O * using R version 4.5.0 (2025-04-11)
2026-05-01T04:23:16.677506Z 01O * using platform: x86_64-pc-linux-gnu
2026-05-01T04:23:16.677748Z 01O * R was compiled by
2026-05-01T04:23:16.677902Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-05-01T04:23:16.677903Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-05-01T04:23:16.678105Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-05-01T04:23:16.678331Z 01O * using session charset: UTF-8
2026-05-01T04:23:17.396141Z 01O * using option ‘--as-cran’
2026-05-01T04:23:17.396533Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-05-01T04:23:17.398856Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-05-01T04:23:17.399057Z 01O * package encoding: UTF-8
2026-05-01T04:23:17.399288Z 01O * checking CRAN incoming feasibility ... OK
2026-05-01T04:23:17.926283Z 01O * checking package namespace information ... OK
2026-05-01T04:23:17.935971Z 01O * checking package dependencies ... OK
2026-05-01T04:23:18.907306Z 01O * checking if this is a source package ... OK
2026-05-01T04:23:18.910228Z 01O * checking if there is a namespace ... OK
2026-05-01T04:23:18.914133Z 01O * checking for .dll and .exe files ... OK
2026-05-01T04:23:18.914679Z 01O * checking for hidden files and directories ... OK
2026-05-01T04:23:18.917461Z 01O * checking for portable file names ... OK
2026-05-01T04:23:18.921538Z 01O * checking for sufficient/correct file permissions ... OK
2026-05-01T04:23:18.933467Z 01O * checking whether package ‘data.table’ can be installed ... [23s/23s] OK
2026-05-01T04:23:42.413550Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-05-01T04:23:42.413883Z 01O * checking installed package size ... OK
2026-05-01T04:23:42.429911Z 01O * checking package directory ... OK
2026-05-01T04:23:42.430285Z 01O * checking for future file timestamps ... OK
2026-05-01T04:23:42.430808Z 01O * checking ‘build’ directory ... OK
2026-05-01T04:23:42.431647Z 01O * checking DESCRIPTION meta-information ... OK
2026-05-01T04:23:43.206535Z 01O * checking top-level files ... OK
2026-05-01T04:23:44.657862Z 01O * checking for left-over files ... OK
2026-05-01T04:23:44.660873Z 01O * checking index information ... OK
2026-05-01T04:23:44.817012Z 01O * checking package subdirectories ... OK
2026-05-01T04:23:45.175605Z 01O * checking code files for non-ASCII characters ... OK
2026-05-01T04:23:45.225115Z 01O * checking R files for syntax errors ... OK
2026-05-01T04:23:45.302856Z 01O * checking whether the package can be loaded ... OK
2026-05-01T04:23:45.500777Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-05-01T04:23:45.655229Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-05-01T04:23:45.809812Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-05-01T04:23:45.967025Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-05-01T04:23:46.164365Z 01O * checking loading without being on the library search path ... OK
2026-05-01T04:23:46.534758Z 01O * checking whether startup messages can be suppressed ... OK
2026-05-01T04:23:46.724414Z 01O * checking use of S3 registration ... OK
2026-05-01T04:23:47.653373Z 01O * checking dependencies in R code ... OK
2026-05-01T04:23:48.459647Z 01O * checking S3 generic/method consistency ... OK
2026-05-01T04:23:48.786429Z 01O * checking replacement functions ... OK
2026-05-01T04:23:48.977965Z 01O * checking foreign function calls ... OK
2026-05-01T04:23:49.721941Z 01O * checking R code for possible problems ... [16s/16s] OK
2026-05-01T04:24:05.601360Z 01O * checking Rd files ... OK
2026-05-01T04:24:06.174389Z 01O * checking Rd metadata ... OK
2026-05-01T04:24:06.215140Z 01O * checking Rd line widths ... OK
2026-05-01T04:24:06.491902Z 01O * checking Rd cross-references ... OK
2026-05-01T04:24:07.013531Z 01O * checking for missing documentation entries ... OK
2026-05-01T04:24:07.225686Z 01O * checking for code/documentation mismatches ... OK
2026-05-01T04:24:08.140721Z 01O * checking Rd \usage sections ... OK
2026-05-01T04:24:08.924324Z 01O * checking Rd contents ... OK
2026-05-01T04:24:09.326757Z 01O * checking for unstated dependencies in examples ... OK
2026-05-01T04:24:09.761157Z 01O * checking line endings in shell scripts ... OK
2026-05-01T04:24:09.761743Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-05-01T04:24:09.779552Z 01O * checking line endings in Makefiles ... OK
2026-05-01T04:24:09.780084Z 01O * checking compilation flags in Makevars ... OK
2026-05-01T04:24:09.831101Z 01O * checking for GNU extensions in Makefiles ... OK
2026-05-01T04:24:09.832045Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-05-01T04:24:09.833247Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-05-01T04:24:09.837324Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-05-01T04:24:09.844054Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-05-01T04:24:09.865020Z 01O * checking compilation flags used ... OK
2026-05-01T04:24:09.866521Z 01O * checking compiled code ... NOTE
2026-05-01T04:24:09.934995Z 01O File ‘data.table/libs/data_table.so’:
2026-05-01T04:24:09.934998Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-05-01T04:24:09.934998Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-05-01T04:24:09.934999Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-05-01T04:24:09.935565Z 01O 
2026-05-01T04:24:09.935588Z 01O Compiled code should not call non-API entry points in R.
2026-05-01T04:24:09.935589Z 01O 
2026-05-01T04:24:09.935589Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-05-01T04:24:09.935590Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-05-01T04:24:09.935591Z 01O non-API entry points.
2026-05-01T04:24:09.936577Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-05-01T04:24:10.125091Z 01O * checking files in ‘vignettes’ ... OK
2026-05-01T04:24:10.321794Z 01O * checking examples ... OK
2026-05-01T04:24:16.705989Z 01O * checking examples with --run-donttest ... OK
2026-05-01T04:24:25.299108Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-05-01T04:24:25.365382Z 01O * checking tests ...
2026-05-01T04:24:25.504213Z 01E   Running ‘autoprint.R’
2026-05-01T04:24:25.736710Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-05-01T04:24:25.743078Z 01E   Running ‘froll.R’ [420s/401s]
2026-05-01T04:31:06.591702Z 01E   Running ‘litedown.R’
2026-05-01T04:31:06.872440Z 01E   Running ‘main.R’ [44s/40s]
2026-05-01T04:31:46.570502Z 01E   Running ‘mergelist.R’
2026-05-01T04:31:47.992045Z 01E   Running ‘nafill.R’
2026-05-01T04:31:48.461643Z 01E   Running ‘optimize.R’
2026-05-01T04:31:49.772228Z 01E   Running ‘other.R’
2026-05-01T04:31:49.983948Z 01E   Running ‘programming.R’
2026-05-01T04:31:50.544408Z 01E   Running ‘S4.R’
2026-05-01T04:31:50.851546Z 01E   Running ‘types.R’
2026-05-01T04:31:51.075028Z 01O  [470s/446s] OK
2026-05-01T04:31:51.255022Z 01O * checking for unstated dependencies in vignettes ... OK
2026-05-01T04:31:51.521952Z 01O * checking package vignettes ... OK
2026-05-01T04:31:52.168183Z 01O * checking re-building of vignette outputs ... [27s/28s] OK
2026-05-01T04:32:19.851560Z 01O * checking PDF version of manual ... OK
2026-05-01T04:32:25.526341Z 01O * checking HTML version of manual ... OK
2026-05-01T04:32:28.436175Z 01O * checking for non-standard things in the check directory ... OK
2026-05-01T04:32:28.436678Z 01O * checking for detritus in the temp directory ... OK
2026-05-01T04:32:28.437289Z 01O * DONE
2026-05-01T04:32:28.437685Z 01E 
2026-05-01T04:32:28.437773Z 01O Status: 1 NOTE
2026-05-01T04:32:28.437965Z 01E See
2026-05-01T04:32:28.437966Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-05-01T04:32:28.437968Z 01E for details.
2026-05-01T04:32:28.438062Z 01E 
2026-05-01T04:32:28.762880Z 00O section_end:1777609948:step_script
2026-05-01T04:32:28.762884Z 00O+section_start:1777609948:after_script
2026-05-01T04:32:28.763219Z 00O+Running after_script
2026-05-01T04:32:29.087405Z 01O Running after script...
2026-05-01T04:32:29.087425Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-05-01T04:32:29.088582Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-05-01T04:32:29.088586Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-05-01T04:32:29.088688Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-05-01T04:32:29.088870Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-05-01T04:32:29.250051Z 00O section_end:1777609949:after_script
2026-05-01T04:32:29.250054Z 00O+section_start:1777609949:upload_artifacts_on_success
2026-05-01T04:32:29.250726Z 00O+Uploading artifacts for successful job
2026-05-01T04:32:29.638945Z 01O Uploading artifacts...
2026-05-01T04:32:29.716204Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-05-01T04:32:32.096110Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=7c12aa4ea7dc49d2b6258c2ad653e1d2 id=14173257973 responseStatus=201 Created token=6e_S3zy5k
2026-05-01T04:32:32.264082Z 00O section_end:1777609952:upload_artifacts_on_success
2026-05-01T04:32:32.264089Z 00O+section_start:1777609952:cleanup_file_variables
2026-05-01T04:32:32.264189Z 00O+Cleaning up project directory and file based variables
2026-05-01T04:32:32.755658Z 00O section_end:1777609952:cleanup_file_variables
2026-05-01T04:32:32.755662Z 00O+
2026-05-01T04:32:32.792065Z 00O Job succeeded