2026-06-14T04:20:58.011889Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-06-14T04:20:58.011901Z 00O   on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586
2026-06-14T04:20:58.011907Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-06-14T04:20:58.011929Z 00O Resolving secrets
2026-06-14T04:20:58.012056Z 00O section_start:1781410858:prepare_executor
2026-06-14T04:20:58.012057Z 00O+Preparing the "docker+machine" executor
2026-06-14T04:20:58.142137Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-06-14T04:21:02.004602Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-06-14T04:21:02.005202Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-06-14T04:21:02.005211Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-06-14T04:21:12.174568Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-06-14T04:21:12.174658Z 00O section_end:1781410872:prepare_executor
2026-06-14T04:21:12.174659Z 00O+section_start:1781410872:prepare_script
2026-06-14T04:21:12.174753Z 00O+Preparing environment
2026-06-14T04:21:12.175582Z 00O Using effective pull policy of [always] for container sha256:9afee3ef0e4660b00c2638bbcc82121dd9f7949e26a932022974878ca1ab6c39
2026-06-14T04:21:21.273868Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1781410808-2839cbca...
2026-06-14T04:21:21.417750Z 00O section_end:1781410881:prepare_script
2026-06-14T04:21:21.417757Z 00O+section_start:1781410881:get_sources
2026-06-14T04:21:21.418299Z 00O+Getting source from Git repository
2026-06-14T04:21:21.745348Z 01O Gitaly correlation ID: f5fb9c13eeb64394868ff1202737fe29
2026-06-14T04:21:21.750633Z 01O Fetching changes...
2026-06-14T04:21:21.753489Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-06-14T04:21:21.755456Z 01O Created fresh repository.
2026-06-14T04:21:27.079220Z 01O Checking out 9fb84861 as detached HEAD (ref is master)...
2026-06-14T04:21:27.256391Z 01O 
2026-06-14T04:21:27.256393Z 01O Skipping Git submodules setup
2026-06-14T04:21:27.256394Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-06-14T04:21:27.448221Z 00O section_end:1781410887:get_sources
2026-06-14T04:21:27.448226Z 00O+section_start:1781410887:download_artifacts
2026-06-14T04:21:27.448950Z 00O+Downloading artifacts
2026-06-14T04:21:27.787523Z 01O Downloading artifacts for mirror-packages (14844569541)...
2026-06-14T04:21:28.044834Z 01E Direct download from storage.googleapis.com         correlation_id=6920ec8d1bf443ef90b00523df111327 id=14844569541 status=302 token=70_q1daR4
2026-06-14T04:21:28.530350Z 01E Downloading artifacts from coordinator... ok        correlation_id=6920ec8d1bf443ef90b00523df111327 id=14844569541 status=302 token=70_q1daR4
2026-06-14T04:21:29.106697Z 01O Downloading artifacts for build (14844569542)...
2026-06-14T04:21:29.290407Z 01E Direct download from storage.googleapis.com         correlation_id=ed492ab513384a44953b072c832eeac4 id=14844569542 status=302 token=70_q1daR4
2026-06-14T04:21:29.477727Z 01E Downloading artifacts from coordinator... ok        correlation_id=ed492ab513384a44953b072c832eeac4 id=14844569542 status=302 token=70_q1daR4
2026-06-14T04:21:30.135099Z 00O section_end:1781410890:download_artifacts
2026-06-14T04:21:30.135106Z 00O+section_start:1781410890:step_script
2026-06-14T04:21:30.135566Z 00O+Executing "step_script" stage of the job script
2026-06-14T04:21:30.135585Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-06-14T04:21:30.136472Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-06-14T04:21:30.439536Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-06-14T04:21:30.446080Z 01O $ mkdir -p ~/.R
2026-06-14T04:21:30.447304Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-06-14T04:21:30.652091Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-06-14T04:21:30.652101Z 01E 
2026-06-14T04:22:30.561060Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-06-14T04:22:30.561077Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-06-14T04:22:30.561078Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-06-14T04:22:30.725834Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-06-14T04:22:30.725922Z 01O * using R version 4.5.0 (2025-04-11)
2026-06-14T04:22:30.726048Z 01O * using platform: x86_64-pc-linux-gnu
2026-06-14T04:22:30.726186Z 01O * R was compiled by
2026-06-14T04:22:30.726297Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-06-14T04:22:30.726298Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-06-14T04:22:30.726429Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-06-14T04:22:30.726593Z 01O * using session charset: UTF-8
2026-06-14T04:22:31.379377Z 01O * using option ‘--as-cran’
2026-06-14T04:22:31.379553Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-06-14T04:22:31.381894Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-06-14T04:22:31.382060Z 01O * package encoding: UTF-8
2026-06-14T04:22:31.382184Z 01O * checking CRAN incoming feasibility ... OK
2026-06-14T04:22:31.902466Z 01O * checking package namespace information ... OK
2026-06-14T04:22:31.912950Z 01O * checking package dependencies ... OK
2026-06-14T04:22:32.883288Z 01O * checking if this is a source package ... OK
2026-06-14T04:22:32.885517Z 01O * checking if there is a namespace ... OK
2026-06-14T04:22:32.889330Z 01O * checking for .dll and .exe files ... OK
2026-06-14T04:22:32.901348Z 01O * checking for hidden files and directories ... OK
2026-06-14T04:22:32.903138Z 01O * checking for portable file names ... OK
2026-06-14T04:22:32.906686Z 01O * checking for sufficient/correct file permissions ... OK
2026-06-14T04:22:32.910251Z 01O * checking whether package ‘data.table’ can be installed ... [23s/23s] OK
2026-06-14T04:22:55.795142Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-06-14T04:22:55.795441Z 01O * checking installed package size ... OK
2026-06-14T04:22:55.808974Z 01O * checking package directory ... OK
2026-06-14T04:22:55.809273Z 01O * checking for future file timestamps ... OK
2026-06-14T04:22:55.809812Z 01O * checking ‘build’ directory ... OK
2026-06-14T04:22:55.810650Z 01O * checking DESCRIPTION meta-information ... OK
2026-06-14T04:22:56.595446Z 01O * checking top-level files ... OK
2026-06-14T04:22:57.965928Z 01O * checking for left-over files ... OK
2026-06-14T04:22:57.968393Z 01O * checking index information ... OK
2026-06-14T04:22:58.124817Z 01O * checking package subdirectories ... OK
2026-06-14T04:22:58.469902Z 01O * checking code files for non-ASCII characters ... OK
2026-06-14T04:22:58.514880Z 01O * checking R files for syntax errors ... OK
2026-06-14T04:22:58.586860Z 01O * checking whether the package can be loaded ... OK
2026-06-14T04:22:58.768630Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-06-14T04:22:58.915377Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-06-14T04:22:59.062319Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-06-14T04:22:59.212164Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-06-14T04:22:59.400805Z 01O * checking loading without being on the library search path ... OK
2026-06-14T04:22:59.775764Z 01O * checking whether startup messages can be suppressed ... OK
2026-06-14T04:22:59.958080Z 01O * checking use of S3 registration ... OK
2026-06-14T04:23:00.908428Z 01O * checking dependencies in R code ... OK
2026-06-14T04:23:01.628166Z 01O * checking S3 generic/method consistency ... OK
2026-06-14T04:23:01.946680Z 01O * checking replacement functions ... OK
2026-06-14T04:23:02.133225Z 01O * checking foreign function calls ... OK
2026-06-14T04:23:02.829804Z 01O * checking R code for possible problems ... [14s/14s] OK
2026-06-14T04:23:16.956904Z 01O * checking Rd files ... OK
2026-06-14T04:23:17.488918Z 01O * checking Rd metadata ... OK
2026-06-14T04:23:17.527099Z 01O * checking Rd line widths ... OK
2026-06-14T04:23:17.781720Z 01O * checking Rd cross-references ... OK
2026-06-14T04:23:18.309308Z 01O * checking for missing documentation entries ... OK
2026-06-14T04:23:18.523056Z 01O * checking for code/documentation mismatches ... OK
2026-06-14T04:23:19.424712Z 01O * checking Rd \usage sections ... OK
2026-06-14T04:23:20.272921Z 01O * checking Rd contents ... OK
2026-06-14T04:23:20.673588Z 01O * checking for unstated dependencies in examples ... OK
2026-06-14T04:23:21.071770Z 01O * checking line endings in shell scripts ... OK
2026-06-14T04:23:21.072140Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-06-14T04:23:21.088342Z 01O * checking line endings in Makefiles ... OK
2026-06-14T04:23:21.088761Z 01O * checking compilation flags in Makevars ... OK
2026-06-14T04:23:21.137091Z 01O * checking for GNU extensions in Makefiles ... OK
2026-06-14T04:23:21.137881Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-06-14T04:23:21.138966Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-06-14T04:23:21.141482Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-06-14T04:23:21.146076Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-06-14T04:23:21.167736Z 01O * checking compilation flags used ... OK
2026-06-14T04:23:21.169133Z 01O * checking compiled code ... NOTE
2026-06-14T04:23:21.236895Z 01O File ‘data.table/libs/data.table.so’:
2026-06-14T04:23:21.236898Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-06-14T04:23:21.236899Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-06-14T04:23:21.236900Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-06-14T04:23:21.237527Z 01O 
2026-06-14T04:23:21.237528Z 01O Compiled code should not call non-API entry points in R.
2026-06-14T04:23:21.237529Z 01O 
2026-06-14T04:23:21.237529Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-06-14T04:23:21.237530Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-06-14T04:23:21.237531Z 01O non-API entry points.
2026-06-14T04:23:21.238442Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-06-14T04:23:21.426275Z 01O * checking files in ‘vignettes’ ... OK
2026-06-14T04:23:21.614413Z 01O * checking examples ... OK
2026-06-14T04:23:27.664016Z 01O * checking examples with --run-donttest ... OK
2026-06-14T04:23:36.319131Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-06-14T04:23:36.379024Z 01O * checking tests ...
2026-06-14T04:23:36.514932Z 01E   Running ‘autoprint.R’
2026-06-14T04:23:36.738013Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-06-14T04:23:36.744127Z 01E   Running ‘froll.R’ [418s/402s]
2026-06-14T04:30:18.900996Z 01E   Running ‘litedown.R’
2026-06-14T04:30:19.183903Z 01E   Running ‘main.R’ [43s/40s]
2026-06-14T04:30:59.003472Z 01E   Running ‘mergelist.R’
2026-06-14T04:31:00.443774Z 01E   Running ‘nafill.R’
2026-06-14T04:31:00.897591Z 01E   Running ‘optimize.R’
2026-06-14T04:31:02.109575Z 01E   Running ‘other.R’
2026-06-14T04:31:02.301685Z 01E   Running ‘programming.R’
2026-06-14T04:31:02.836546Z 01E   Running ‘S4.R’
2026-06-14T04:31:03.129395Z 01E   Running ‘types.R’
2026-06-14T04:31:03.353632Z 01O  [467s/447s] OK
2026-06-14T04:31:03.463688Z 01O * checking for unstated dependencies in vignettes ... OK
2026-06-14T04:31:03.720380Z 01O * checking package vignettes ... OK
2026-06-14T04:31:04.472693Z 01O * checking re-building of vignette outputs ... [27s/28s] OK
2026-06-14T04:31:32.324305Z 01O * checking PDF version of manual ... OK
2026-06-14T04:31:37.762893Z 01O * checking HTML version of manual ... OK
2026-06-14T04:31:40.275342Z 01O * checking for non-standard things in the check directory ... OK
2026-06-14T04:31:40.275784Z 01O * checking for detritus in the temp directory ... OK
2026-06-14T04:31:40.276284Z 01O * DONE
2026-06-14T04:31:40.276589Z 01E 
2026-06-14T04:31:40.276707Z 01O Status: 1 NOTE
2026-06-14T04:31:40.276835Z 01E See
2026-06-14T04:31:40.276835Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-06-14T04:31:40.276837Z 01E for details.
2026-06-14T04:31:40.276875Z 01E 
2026-06-14T04:31:40.578017Z 00O section_end:1781411500:step_script
2026-06-14T04:31:40.578023Z 00O+section_start:1781411500:after_script
2026-06-14T04:31:40.578518Z 00O+Running after_script
2026-06-14T04:31:40.875104Z 01O Running after script...
2026-06-14T04:31:40.875134Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-06-14T04:31:40.876066Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-06-14T04:31:40.876078Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-06-14T04:31:40.876112Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-06-14T04:31:40.876176Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-06-14T04:31:41.024329Z 00O section_end:1781411501:after_script
2026-06-14T04:31:41.024333Z 00O+section_start:1781411501:upload_artifacts_on_success
2026-06-14T04:31:41.025179Z 00O+Uploading artifacts for successful job
2026-06-14T04:31:41.374090Z 01O Uploading artifacts...
2026-06-14T04:31:41.424435Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-06-14T04:31:43.614205Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=942de7ebce1d41b2a643b9781f3a1f71 id=14844569545 status=201 token=70_q1daR4
2026-06-14T04:31:43.766404Z 00O section_end:1781411503:upload_artifacts_on_success
2026-06-14T04:31:43.766409Z 00O+section_start:1781411503:cleanup_file_variables
2026-06-14T04:31:43.766520Z 00O+Cleaning up project directory and file based variables
2026-06-14T04:31:44.207880Z 00O section_end:1781411504:cleanup_file_variables
2026-06-14T04:31:44.207885Z 00O+
2026-06-14T04:31:44.232057Z 00O Job succeeded