2026-06-19T04:22:19.376639Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-06-19T04:22:19.376650Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2026-06-19T04:22:19.376656Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-06-19T04:22:19.376673Z 00O Resolving secrets
2026-06-19T04:22:19.376826Z 00O section_start:1781842939:prepare_executor
2026-06-19T04:22:19.376828Z 00O+Preparing the "docker+machine" executor
2026-06-19T04:22:19.499347Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-06-19T04:22:22.284973Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-06-19T04:22:22.285454Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-06-19T04:22:22.285463Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-06-19T04:22:33.186267Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-06-19T04:22:33.186341Z 00O section_end:1781842953:prepare_executor
2026-06-19T04:22:33.186342Z 00O+section_start:1781842953:prepare_script
2026-06-19T04:22:33.186422Z 00O+Preparing environment
2026-06-19T04:22:33.187029Z 00O Using effective pull policy of [always] for container sha256:ae54af044f3ccd56c4d91804c8ea25fd329885677b85d0a7a1068a8a749191c4
2026-06-19T04:22:42.231047Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1781842912-00fab5fe...
2026-06-19T04:22:42.346369Z 00O section_end:1781842962:prepare_script
2026-06-19T04:22:42.346375Z 00O+section_start:1781842962:get_sources
2026-06-19T04:22:42.346938Z 00O+Getting source from Git repository
2026-06-19T04:22:42.572299Z 01O Gitaly correlation ID: 82d235471ace49cb94741ce100d2ddbf
2026-06-19T04:22:42.575381Z 01O Fetching changes...
2026-06-19T04:22:42.577057Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-06-19T04:22:42.578132Z 01O Created fresh repository.
2026-06-19T04:22:45.958043Z 01O Checking out 0b57d389 as detached HEAD (ref is master)...
2026-06-19T04:22:46.059347Z 01O 
2026-06-19T04:22:46.059351Z 01O Skipping Git submodules setup
2026-06-19T04:22:46.059352Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-06-19T04:22:46.216321Z 00O section_end:1781842966:get_sources
2026-06-19T04:22:46.216325Z 00O+section_start:1781842966:download_artifacts
2026-06-19T04:22:46.217087Z 00O+Downloading artifacts
2026-06-19T04:22:46.451429Z 01O Downloading artifacts for build (14933914314)...
2026-06-19T04:22:46.620560Z 01E Direct download from storage.googleapis.com         correlation_id=e460b93914f948ea8e6dd9d2e12fd437 id=14933914314 status=302 token=70_Qs2VKF
2026-06-19T04:22:46.876917Z 01E Downloading artifacts from coordinator... ok        correlation_id=e460b93914f948ea8e6dd9d2e12fd437 id=14933914314 status=302 token=70_Qs2VKF
2026-06-19T04:22:46.886064Z 01O Downloading artifacts for mirror-packages (14933914313)...
2026-06-19T04:22:47.116684Z 01E Direct download from storage.googleapis.com         correlation_id=939aaedd3faf4341bdd3ae2ea021dfd3 id=14933914313 status=302 token=70_Qs2VKF
2026-06-19T04:22:47.790626Z 01E Downloading artifacts from coordinator... ok        correlation_id=939aaedd3faf4341bdd3ae2ea021dfd3 id=14933914313 status=302 token=70_Qs2VKF
2026-06-19T04:22:48.887067Z 00O section_end:1781842968:download_artifacts
2026-06-19T04:22:48.887074Z 00O+section_start:1781842968:step_script
2026-06-19T04:22:48.887541Z 00O+Executing "step_script" stage of the job script
2026-06-19T04:22:48.887571Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-06-19T04:22:48.888285Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-06-19T04:22:49.102543Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-06-19T04:22:49.106448Z 01O $ mkdir -p ~/.R
2026-06-19T04:22:49.107184Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-06-19T04:22:49.236495Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-06-19T04:22:49.236500Z 01E 
2026-06-19T04:23:28.552565Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-06-19T04:23:28.552580Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-06-19T04:23:28.552584Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-06-19T04:23:28.655799Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-06-19T04:23:28.655807Z 01O * using R version 4.5.0 (2025-04-11)
2026-06-19T04:23:28.655862Z 01O * using platform: x86_64-pc-linux-gnu
2026-06-19T04:23:28.655941Z 01O * R was compiled by
2026-06-19T04:23:28.655975Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-06-19T04:23:28.655976Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-06-19T04:23:28.656082Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-06-19T04:23:28.656175Z 01O * using session charset: UTF-8
2026-06-19T04:23:29.086616Z 01O * using option ‘--as-cran’
2026-06-19T04:23:29.086711Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-06-19T04:23:29.088354Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-06-19T04:23:29.088421Z 01O * package encoding: UTF-8
2026-06-19T04:23:29.088543Z 01O * checking CRAN incoming feasibility ... OK
2026-06-19T04:23:29.429642Z 01O * checking package namespace information ... OK
2026-06-19T04:23:29.436619Z 01O * checking package dependencies ... OK
2026-06-19T04:23:30.220439Z 01O * checking if this is a source package ... OK
2026-06-19T04:23:30.221963Z 01O * checking if there is a namespace ... OK
2026-06-19T04:23:30.231685Z 01O * checking for .dll and .exe files ... OK
2026-06-19T04:23:30.231895Z 01O * checking for hidden files and directories ... OK
2026-06-19T04:23:30.233000Z 01O * checking for portable file names ... OK
2026-06-19T04:23:30.235162Z 01O * checking for sufficient/correct file permissions ... OK
2026-06-19T04:23:30.237529Z 01O * checking whether package ‘data.table’ can be installed ... [15s/15s] OK
2026-06-19T04:23:45.322425Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-06-19T04:23:45.322655Z 01O * checking installed package size ... OK
2026-06-19T04:23:45.331257Z 01O * checking package directory ... OK
2026-06-19T04:23:45.331507Z 01O * checking for future file timestamps ... OK
2026-06-19T04:23:45.331880Z 01O * checking ‘build’ directory ... OK
2026-06-19T04:23:45.332358Z 01O * checking DESCRIPTION meta-information ... OK
2026-06-19T04:23:45.837945Z 01O * checking top-level files ... OK
2026-06-19T04:23:46.762434Z 01O * checking for left-over files ... OK
2026-06-19T04:23:46.764121Z 01O * checking index information ... OK
2026-06-19T04:23:46.860762Z 01O * checking package subdirectories ... OK
2026-06-19T04:23:47.070894Z 01O * checking code files for non-ASCII characters ... OK
2026-06-19T04:23:47.097301Z 01O * checking R files for syntax errors ... OK
2026-06-19T04:23:47.139982Z 01O * checking whether the package can be loaded ... OK
2026-06-19T04:23:47.254701Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-06-19T04:23:47.345176Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-06-19T04:23:47.436076Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-06-19T04:23:47.529555Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-06-19T04:23:47.646431Z 01O * checking loading without being on the library search path ... OK
2026-06-19T04:23:47.877317Z 01O * checking whether startup messages can be suppressed ... OK
2026-06-19T04:23:47.990814Z 01O * checking use of S3 registration ... OK
2026-06-19T04:23:48.666657Z 01O * checking dependencies in R code ... OK
2026-06-19T04:23:49.201773Z 01O * checking S3 generic/method consistency ... OK
2026-06-19T04:23:49.432717Z 01O * checking replacement functions ... OK
2026-06-19T04:23:49.564129Z 01O * checking foreign function calls ... OK
2026-06-19T04:23:50.029135Z 01O * checking R code for possible problems ... OK
2026-06-19T04:23:59.628240Z 01O * checking Rd files ... OK
2026-06-19T04:23:59.960511Z 01O * checking Rd metadata ... OK
2026-06-19T04:23:59.983837Z 01O * checking Rd line widths ... OK
2026-06-19T04:24:00.158089Z 01O * checking Rd cross-references ... OK
2026-06-19T04:24:00.548920Z 01O * checking for missing documentation entries ... OK
2026-06-19T04:24:00.688044Z 01O * checking for code/documentation mismatches ... OK
2026-06-19T04:24:01.338137Z 01O * checking Rd \usage sections ... OK
2026-06-19T04:24:01.938785Z 01O * checking Rd contents ... OK
2026-06-19T04:24:02.209596Z 01O * checking for unstated dependencies in examples ... OK
2026-06-19T04:24:02.509813Z 01O * checking line endings in shell scripts ... OK
2026-06-19T04:24:02.510184Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-06-19T04:24:02.521029Z 01O * checking line endings in Makefiles ... OK
2026-06-19T04:24:02.521270Z 01O * checking compilation flags in Makevars ... OK
2026-06-19T04:24:02.549849Z 01O * checking for GNU extensions in Makefiles ... OK
2026-06-19T04:24:02.550303Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-06-19T04:24:02.550961Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-06-19T04:24:02.552610Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-06-19T04:24:02.555449Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-06-19T04:24:02.569823Z 01O * checking compilation flags used ... OK
2026-06-19T04:24:02.570861Z 01O * checking compiled code ... NOTE
2026-06-19T04:24:02.613093Z 01O File ‘data.table/libs/data.table.so’:
2026-06-19T04:24:02.613095Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-06-19T04:24:02.613096Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-06-19T04:24:02.613096Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-06-19T04:24:02.613504Z 01O 
2026-06-19T04:24:02.613505Z 01O Compiled code should not call non-API entry points in R.
2026-06-19T04:24:02.613505Z 01O 
2026-06-19T04:24:02.613505Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-06-19T04:24:02.613506Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-06-19T04:24:02.613507Z 01O non-API entry points.
2026-06-19T04:24:02.614177Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-06-19T04:24:02.735127Z 01O * checking files in ‘vignettes’ ... OK
2026-06-19T04:24:02.853554Z 01O * checking examples ... OK
2026-06-19T04:24:09.043466Z 01O * checking examples with --run-donttest ... OK
2026-06-19T04:24:16.462597Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-06-19T04:24:16.499601Z 01O * checking tests ...
2026-06-19T04:24:16.584951Z 01E   Running ‘autoprint.R’
2026-06-19T04:24:16.722459Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-06-19T04:24:16.726084Z 01E   Running ‘froll.R’ [239s/232s]
2026-06-19T04:28:08.508513Z 01E   Running ‘litedown.R’
2026-06-19T04:28:08.684700Z 01E   Running ‘main.R’ [28s/25s]
2026-06-19T04:28:34.005107Z 01E   Running ‘mergelist.R’
2026-06-19T04:28:34.707806Z 01E   Running ‘nafill.R’
2026-06-19T04:28:34.944980Z 01E   Running ‘optimize.R’
2026-06-19T04:28:35.583369Z 01E   Running ‘other.R’
2026-06-19T04:28:35.693223Z 01E   Running ‘programming.R’
2026-06-19T04:28:35.996832Z 01E   Running ‘S4.R’
2026-06-19T04:28:36.161060Z 01E   Running ‘types.R’
2026-06-19T04:28:36.288862Z 01O  [270s/260s] OK
2026-06-19T04:28:36.357546Z 01O * checking for unstated dependencies in vignettes ... OK
2026-06-19T04:28:36.504354Z 01O * checking package vignettes ... OK
2026-06-19T04:28:36.966923Z 01O * checking re-building of vignette outputs ... [17s/17s] OK
2026-06-19T04:28:54.104501Z 01O * checking PDF version of manual ... OK
2026-06-19T04:28:57.435920Z 01O * checking HTML version of manual ... OK
2026-06-19T04:28:59.046965Z 01O * checking for non-standard things in the check directory ... OK
2026-06-19T04:28:59.047175Z 01O * checking for detritus in the temp directory ... OK
2026-06-19T04:28:59.047575Z 01O * DONE
2026-06-19T04:28:59.047818Z 01E 
2026-06-19T04:28:59.047888Z 01O Status: 1 NOTE
2026-06-19T04:28:59.047982Z 01E See
2026-06-19T04:28:59.047983Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-06-19T04:28:59.047984Z 01E for details.
2026-06-19T04:28:59.048003Z 01E 
2026-06-19T04:28:59.267760Z 00O section_end:1781843339:step_script
2026-06-19T04:28:59.267773Z 00O+section_start:1781843339:after_script
2026-06-19T04:28:59.268152Z 00O+Running after_script
2026-06-19T04:28:59.481627Z 01O Running after script...
2026-06-19T04:28:59.481649Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-06-19T04:28:59.482190Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-06-19T04:28:59.482191Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-06-19T04:28:59.482206Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-06-19T04:28:59.482232Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-06-19T04:28:59.608293Z 00O section_end:1781843339:after_script
2026-06-19T04:28:59.608295Z 00O+section_start:1781843339:upload_artifacts_on_success
2026-06-19T04:28:59.609016Z 00O+Uploading artifacts for successful job
2026-06-19T04:28:59.846578Z 01O Uploading artifacts...
2026-06-19T04:28:59.876441Z 01E bus/test-lin-rel-cran: found 713 matching artifact files and directories 
2026-06-19T04:29:01.636349Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=09ccb0f2c957414a9f6a66d48ebea2cf id=14933914317 status=201 token=70_Qs2VKF
2026-06-19T04:29:01.756503Z 00O section_end:1781843341:upload_artifacts_on_success
2026-06-19T04:29:01.756506Z 00O+section_start:1781843341:cleanup_file_variables
2026-06-19T04:29:01.756587Z 00O+Cleaning up project directory and file based variables
2026-06-19T04:29:02.074211Z 00O section_end:1781843342:cleanup_file_variables
2026-06-19T04:29:02.074214Z 00O+
2026-06-19T04:29:02.091850Z 00O Job succeeded