2026-09-15T04:20:22.322507Z 00O Running with gitlab-runner 19.4.0~pre.1956.g7b010e09 (7b010e09)
2026-09-15T04:20:22.322529Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_oTVNmNv0nUBI
2026-09-15T04:20:22.322532Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-09-15T04:20:22.322539Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true
2026-09-15T04:20:22.322572Z 00O Resolving secrets
2026-09-15T04:20:22.322856Z 00O section_start:1789446022:prepare_executor

2026-09-15T04:20:22.322861Z 00O+Preparing the "docker+machine" executor
2026-09-15T04:20:22.484281Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-09-15T04:20:22.484337Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:22.484348Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:22.485523Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:22.485532Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 ...
2026-09-15T04:20:23.453165Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.785849Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:24.785866Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:24.786721Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.786737Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-09-15T04:20:24.787288Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:24.787298Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base ...
2026-09-15T04:20:30.877013Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-09-15T04:20:30.877103Z 00O section_end:1789446030:prepare_executor

2026-09-15T04:20:30.877222Z 00O+section_start:1789446030:prepare_script

2026-09-15T04:20:30.877227Z 00O+Preparing environment
2026-09-15T04:20:30.877261Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:30.877273Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:30.878000Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:30.878014Z 00O Using effective pull policy of [always] for container sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef
2026-09-15T04:20:39.924021Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1789445952-9c5489ec...
2026-09-15T04:20:40.042339Z 00O section_end:1789446040:prepare_script

2026-09-15T04:20:40.042935Z 00O+section_start:1789446040:get_sources

2026-09-15T04:20:40.042943Z 00O+Getting source from Git repository
2026-09-15T04:20:40.262041Z 01O Gitaly correlation ID: ff50002f7d784ef4a24bb9aef7a356b5
2026-09-15T04:20:40.265038Z 01O Fetching changes...
2026-09-15T04:20:40.266773Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-09-15T04:20:40.267998Z 01O Created fresh repository.
2026-09-15T04:20:43.628750Z 01O Checking out a3eeb4c0 as detached HEAD (ref is master)...
2026-09-15T04:20:43.729453Z 01O 
2026-09-15T04:20:43.729458Z 01O Skipping Git submodules setup
2026-09-15T04:20:43.729460Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-09-15T04:20:43.888898Z 00O section_end:1789446043:get_sources

2026-09-15T04:20:43.889888Z 00O+section_start:1789446043:download_artifacts

2026-09-15T04:20:43.889896Z 00O+Downloading artifacts
2026-09-15T04:20:44.122463Z 01O Downloading artifacts for mirror-packages (16501040599)...
2026-09-15T04:20:44.272593Z 01E Direct download from storage.googleapis.com         correlation_id=baf4deb5fc2f4af1ba70869066ff8548 id=16501040599 status=302 token=73_Uut9i7
2026-09-15T04:20:44.821771Z 01E Downloading artifacts from coordinator... ok        correlation_id=baf4deb5fc2f4af1ba70869066ff8548 id=16501040599 status=302 token=73_Uut9i7
2026-09-15T04:20:45.261996Z 01O Downloading artifacts for build (16501040600)...
2026-09-15T04:20:45.456708Z 01E Direct download from storage.googleapis.com         correlation_id=8f5d6226b2dc4b1fb5c2582e8d0d6675 id=16501040600 status=302 token=73_Uut9i7
2026-09-15T04:20:45.684222Z 01E Downloading artifacts from coordinator... ok        correlation_id=8f5d6226b2dc4b1fb5c2582e8d0d6675 id=16501040600 status=302 token=73_Uut9i7
2026-09-15T04:20:46.288623Z 00O section_end:1789446046:download_artifacts

2026-09-15T04:20:46.289089Z 00O+section_start:1789446046:step_script

2026-09-15T04:20:46.289100Z 00O+Executing "step_script" stage of the job script
2026-09-15T04:20:46.289113Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base
2026-09-15T04:20:46.290136Z 00O Using docker image sha256:02effb957528a82923993d0dfe5945c03a2f9e25844af0e8471caad307239e23 for registry.gitlab.com/rdatatable/dockerfiles/r-base with digest registry.gitlab.com/rdatatable/dockerfiles/r-base@sha256:f5668901f25070b6a9c52510da0995a41a22acf73417481b293f7de9255902c6 ...
2026-09-15T04:20:46.500157Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-09-15T04:20:46.504029Z 01O $ mkdir -p ~/.R
2026-09-15T04:20:46.504754Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)'
2026-09-15T04:20:46.625577Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’
2026-09-15T04:20:46.625600Z 01E 
2026-09-15T04:21:22.327322Z 01O $ echo 'CFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-09-15T04:21:22.327334Z 01O $ echo 'CXXFLAGS=-g -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-09-15T04:21:22.327336Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command
2026-09-15T04:21:22.421144Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’
2026-09-15T04:21:22.421153Z 01O * using R version 4.5.0 (2025-04-11)
2026-09-15T04:21:22.421203Z 01O * using platform: x86_64-pc-linux-gnu
2026-09-15T04:21:22.421310Z 01O * R was compiled by
2026-09-15T04:21:22.421314Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-09-15T04:21:22.421315Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-09-15T04:21:22.421407Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-09-15T04:21:22.421507Z 01O * using session charset: UTF-8
2026-09-15T04:21:22.812812Z 01O * using option ‘--as-cran’
2026-09-15T04:21:22.812829Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK
2026-09-15T04:21:22.814433Z 01O * this is package ‘data.table’ version ‘1.18.99’
2026-09-15T04:21:22.814561Z 01O * package encoding: UTF-8
2026-09-15T04:21:22.814628Z 01O * checking CRAN incoming feasibility ... NOTE
2026-09-15T04:21:23.119017Z 01O Maintainer: ‘Tyson Barrett <t.barrett88@gmail.com>’
2026-09-15T04:21:23.119021Z 01O 
2026-09-15T04:21:23.119022Z 01O Authors@R field should be a call to person(), or combine such calls.
2026-09-15T04:21:23.119029Z 01O * checking package namespace information ... OK
2026-09-15T04:21:23.123495Z 01O * checking package dependencies ... OK
2026-09-15T04:21:23.876278Z 01O * checking if this is a source package ... OK
2026-09-15T04:21:23.877680Z 01O * checking if there is a namespace ... OK
2026-09-15T04:21:23.879741Z 01O * checking for .dll and .exe files ... OK
2026-09-15T04:21:23.879936Z 01O * checking for hidden files and directories ... OK
2026-09-15T04:21:23.880902Z 01O * checking for portable file names ... OK
2026-09-15T04:21:23.883041Z 01O * checking for sufficient/correct file permissions ... OK
2026-09-15T04:21:23.885355Z 01O * checking whether package ‘data.table’ can be installed ... [14s/14s] OK
2026-09-15T04:21:38.222493Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’
2026-09-15T04:21:38.222681Z 01O * checking installed package size ... OK
2026-09-15T04:21:38.231508Z 01O * checking package directory ... OK
2026-09-15T04:21:38.231614Z 01O * checking for future file timestamps ... OK
2026-09-15T04:21:38.231851Z 01O * checking ‘build’ directory ... OK
2026-09-15T04:21:38.232427Z 01O * checking DESCRIPTION meta-information ... OK
2026-09-15T04:21:38.706258Z 01O * checking top-level files ... OK
2026-09-15T04:21:39.587224Z 01O * checking for left-over files ... OK
2026-09-15T04:21:39.588907Z 01O * checking index information ... OK
2026-09-15T04:21:39.678795Z 01O * checking package subdirectories ... OK
2026-09-15T04:21:39.874279Z 01O * checking code files for non-ASCII characters ... OK
2026-09-15T04:21:39.899791Z 01O * checking R files for syntax errors ... OK
2026-09-15T04:21:39.940848Z 01O * checking whether the package can be loaded ... OK
2026-09-15T04:21:40.049376Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-09-15T04:21:40.136354Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-09-15T04:21:40.223458Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-09-15T04:21:40.312142Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-09-15T04:21:40.422137Z 01O * checking loading without being on the library search path ... OK
2026-09-15T04:21:40.643578Z 01O * checking whether startup messages can be suppressed ... OK
2026-09-15T04:21:40.749727Z 01O * checking use of S3 registration ... OK
2026-09-15T04:21:41.365816Z 01O * checking dependencies in R code ... OK
2026-09-15T04:21:41.823714Z 01O * checking S3 generic/method consistency ... OK
2026-09-15T04:21:42.013522Z 01O * checking replacement functions ... OK
2026-09-15T04:21:42.123050Z 01O * checking foreign function calls ... OK
2026-09-15T04:21:42.559298Z 01O * checking R code for possible problems ... OK
2026-09-15T04:21:50.862324Z 01O * checking Rd files ... OK
2026-09-15T04:21:51.171789Z 01O * checking Rd metadata ... OK
2026-09-15T04:21:51.193816Z 01O * checking Rd line widths ... NOTE
2026-09-15T04:21:51.351966Z 01O Rd file 'nafill.Rd':
2026-09-15T04:21:51.351968Z 01O   \usage lines wider than 90 characters:
2026-09-15T04:21:51.351970Z 01O      setnafill(x, type=c("const", "locf", "nocb"), fill=NA, nan=NA, cols=seq_along(x), limit=Inf)
2026-09-15T04:21:51.351972Z 01O 
2026-09-15T04:21:51.352204Z 01O These lines will be truncated in the PDF manual.
2026-09-15T04:21:51.352212Z 01O * checking Rd cross-references ... OK
2026-09-15T04:21:51.804832Z 01O * checking for missing documentation entries ... OK
2026-09-15T04:21:51.940347Z 01O * checking for code/documentation mismatches ... OK
2026-09-15T04:21:52.525755Z 01O * checking Rd \usage sections ... OK
2026-09-15T04:21:53.044385Z 01O * checking Rd contents ... OK
2026-09-15T04:21:53.292308Z 01O * checking for unstated dependencies in examples ... OK
2026-09-15T04:21:53.540994Z 01O * checking line endings in shell scripts ... OK
2026-09-15T04:21:53.541227Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-09-15T04:21:53.553529Z 01O * checking line endings in Makefiles ... OK
2026-09-15T04:21:53.553772Z 01O * checking compilation flags in Makevars ... OK
2026-09-15T04:21:53.581854Z 01O * checking for GNU extensions in Makefiles ... OK
2026-09-15T04:21:53.582163Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-09-15T04:21:53.582769Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-09-15T04:21:53.584326Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
2026-09-15T04:21:53.587145Z 01O * checking pragmas in C/C++ headers and code ... OK
2026-09-15T04:21:53.598824Z 01O * checking compilation flags used ... OK
2026-09-15T04:21:53.599760Z 01O * checking compiled code ... NOTE
2026-09-15T04:21:53.639309Z 01O File ‘data.table/libs/data.table.so’:
2026-09-15T04:21:53.639355Z 01O   Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’,
2026-09-15T04:21:53.639357Z 01O     ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
2026-09-15T04:21:53.639358Z 01O     ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’
2026-09-15T04:21:53.639530Z 01O 
2026-09-15T04:21:53.639532Z 01O Compiled code should not call non-API entry points in R.
2026-09-15T04:21:53.639534Z 01O 
2026-09-15T04:21:53.639535Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
2026-09-15T04:21:53.639536Z 01O and section ‘Moving into C API compliance’ for issues with the use of
2026-09-15T04:21:53.639537Z 01O non-API entry points.
2026-09-15T04:21:53.640266Z 01O * checking installed files from ‘inst/doc’ ... OK
2026-09-15T04:21:53.748112Z 01O * checking files in ‘vignettes’ ... OK
2026-09-15T04:21:53.858104Z 01O * checking examples ... OK
2026-09-15T04:21:58.899796Z 01O * checking examples with --run-donttest ... OK
2026-09-15T04:22:05.220287Z 01O * checking for unstated dependencies in ‘tests’ ... OK
2026-09-15T04:22:05.255034Z 01O * checking tests ...
2026-09-15T04:22:05.334580Z 01E   Running ‘autoprint.R’
2026-09-15T04:22:05.463455Z 01E   Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
2026-09-15T04:22:05.466923Z 01E   Running ‘froll.R’ [242s/234s]
2026-09-15T04:25:59.496544Z 01E   Running ‘litedown.R’
2026-09-15T04:25:59.665151Z 01E   Running ‘main.R’ [29s/26s]
2026-09-15T04:26:25.937986Z 01E   Running ‘mergelist.R’
2026-09-15T04:26:26.747838Z 01E   Running ‘nafill.R’
2026-09-15T04:26:27.012827Z 01E   Running ‘optimize.R’
2026-09-15T04:26:27.763551Z 01E   Running ‘other.R’
2026-09-15T04:26:27.888314Z 01E   Running ‘programming.R’
2026-09-15T04:26:28.238705Z 01E   Running ‘S4.R’
2026-09-15T04:26:28.424963Z 01E   Running ‘self.R’
2026-09-15T04:26:28.555794Z 01E   Running ‘types.R’
2026-09-15T04:26:28.695074Z 01O  [274s/263s] OK
2026-09-15T04:26:28.741157Z 01O * checking for unstated dependencies in vignettes ... OK
2026-09-15T04:26:28.893897Z 01O * checking package vignettes ... OK
2026-09-15T04:26:29.284319Z 01O * checking re-building of vignette outputs ... [17s/17s] OK
2026-09-15T04:26:46.507063Z 01O * checking PDF version of manual ... OK
2026-09-15T04:26:49.904498Z 01O * checking HTML version of manual ... OK
2026-09-15T04:26:51.623686Z 01O * checking for non-standard things in the check directory ... OK
2026-09-15T04:26:51.623990Z 01O * checking for detritus in the temp directory ... OK
2026-09-15T04:26:51.624307Z 01O * DONE
2026-09-15T04:26:51.624587Z 01E 
2026-09-15T04:26:51.624594Z 01O Status: 3 NOTEs
2026-09-15T04:26:51.624728Z 01E See
2026-09-15T04:26:51.624730Z 01E   ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’
2026-09-15T04:26:51.624732Z 01E for details.
2026-09-15T04:26:51.624740Z 01E 
2026-09-15T04:26:51.715302Z 01E Error: Last line of '00check.log' is not 'Status: 1 NOTE' (non-API) but 'Status: 3 NOTEs'
2026-09-15T04:26:51.715308Z 01E Execution halted
2026-09-15T04:26:51.840351Z 00O section_end:1789446411:step_script

2026-09-15T04:26:51.840842Z 00O+section_start:1789446411:after_script

2026-09-15T04:26:51.840849Z 00O+Running after_script
2026-09-15T04:26:52.045544Z 01O Running after script...
2026-09-15T04:26:52.045581Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-09-15T04:26:52.046066Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-09-15T04:26:52.046079Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-09-15T04:26:52.046156Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-09-15T04:26:52.046165Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-09-15T04:26:52.161625Z 00O section_end:1789446412:after_script

2026-09-15T04:26:52.162450Z 00O+section_start:1789446412:upload_artifacts_on_failure

2026-09-15T04:26:52.162456Z 00O+Uploading artifacts for failed job
2026-09-15T04:26:52.403367Z 01O Uploading artifacts...
2026-09-15T04:26:52.433642Z 01E bus/test-lin-rel-cran: found 720 matching artifact files and directories 
2026-09-15T04:26:53.634445Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=67fd3fddd769497fb878ef66cc3a2186 id=16501040603 status=201 token=73_Uut9i7
2026-09-15T04:26:53.751144Z 00O section_end:1789446413:upload_artifacts_on_failure

2026-09-15T04:26:53.751630Z 00O+section_start:1789446413:cleanup_file_variables

2026-09-15T04:26:53.751638Z 00O+Cleaning up project directory and file based variables
2026-09-15T04:26:54.081469Z 00O section_end:1789446414:cleanup_file_variables

2026-09-15T04:26:54.102619Z 00O ERROR: Job failed: exit code 1