2026-06-15T04:21:06.321711Z 00O Running with gitlab-runner 19.0.0~pre.1138.ga0a1e0e8 (a0a1e0e8)
2026-06-15T04:21:06.321722Z 00O   on blue-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default DS1-6aDu5, system ID: s_eacbc5a4b586
2026-06-15T04:21:06.321727Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-06-15T04:21:06.321743Z 00O Resolving secrets
2026-06-15T04:21:06.321878Z 00O section_start:1781497266:prepare_executor
2026-06-15T04:21:06.321879Z 00O+Preparing the "docker+machine" executor
2026-06-15T04:21:06.450361Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-06-15T04:21:10.078402Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-06-15T04:21:10.078940Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-06-15T04:21:10.078950Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-06-15T04:21:15.268606Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-06-15T04:21:15.268709Z 00O section_end:1781497275:prepare_executor
2026-06-15T04:21:15.268710Z 00O+section_start:1781497275:prepare_script
2026-06-15T04:21:15.268797Z 00O+Preparing environment
2026-06-15T04:21:15.269593Z 00O Using effective pull policy of [always] for container sha256:be4d6f6d1169e2f12fb24313be4bf27cdbd56ba1c098fb09cf9a4248cb8d43b6
2026-06-15T04:21:19.510343Z 01O Running on runner-ds1-6adu5-project-3622566-concurrent-0 via runner-ds1-6adu5-s-l-m-amd64-1781497190-7129682c...
2026-06-15T04:21:19.653304Z 00O section_end:1781497279:prepare_script
2026-06-15T04:21:19.653309Z 00O+section_start:1781497279:get_sources
2026-06-15T04:21:19.653852Z 00O+Getting source from Git repository
2026-06-15T04:21:19.972020Z 01O Gitaly correlation ID: c138c5c04684463b93dcdc8258c94a64
2026-06-15T04:21:19.977508Z 01O Fetching changes...
2026-06-15T04:21:19.980094Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-06-15T04:21:19.982165Z 01O Created fresh repository.
2026-06-15T04:21:25.327173Z 01O Checking out 9fb84861 as detached HEAD (ref is master)...
2026-06-15T04:21:25.503556Z 01O 
2026-06-15T04:21:25.503564Z 01O Skipping Git submodules setup
2026-06-15T04:21:25.503565Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-06-15T04:21:25.682427Z 00O section_end:1781497285:get_sources
2026-06-15T04:21:25.682434Z 00O+section_start:1781497285:download_artifacts
2026-06-15T04:21:25.683300Z 00O+Downloading artifacts
2026-06-15T04:21:26.029609Z 01O Downloading artifacts for mirror-packages (14850332670)...
2026-06-15T04:21:26.218434Z 01E Direct download from storage.googleapis.com         correlation_id=8d617176e46a401c95092e461bfe4671 id=14850332670 status=302 token=70_uqDzxx
2026-06-15T04:21:26.710259Z 01E Downloading artifacts from coordinator... ok        correlation_id=8d617176e46a401c95092e461bfe4671 id=14850332670 status=302 token=70_uqDzxx
2026-06-15T04:21:27.320809Z 01O Downloading artifacts for build (14850332671)...
2026-06-15T04:21:27.515502Z 01E Direct download from storage.googleapis.com         correlation_id=a8a90abc0d954b11a4766de7303afe6b id=14850332671 status=302 token=70_uqDzxx
2026-06-15T04:21:27.687738Z 01E Downloading artifacts from coordinator... ok        correlation_id=a8a90abc0d954b11a4766de7303afe6b id=14850332671 status=302 token=70_uqDzxx
2026-06-15T04:21:28.333768Z 00O section_end:1781497288:download_artifacts
2026-06-15T04:21:28.333773Z 00O+section_start:1781497288:step_script
2026-06-15T04:21:28.334235Z 00O+Executing "step_script" stage of the job script
2026-06-15T04:21:28.334253Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-06-15T04:21:28.335029Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-06-15T04:21:28.634623Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-06-15T04:21:28.641022Z 01O $ mkdir -p ~/.R
2026-06-15T04:21:28.641914Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-06-15T04:21:28.641979Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-06-15T04:21:28.641980Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-06-15T04:21:28.803867Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-06-15T04:21:28.803878Z 01O * using R version 4.5.0 (2025-04-11)
2026-06-15T04:21:28.804061Z 01O * using platform: x86_64-pc-linux-gnu
2026-06-15T04:21:28.804145Z 01O * R was compiled by
2026-06-15T04:21:28.804247Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-06-15T04:21:28.804248Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-06-15T04:21:28.804398Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-06-15T04:21:28.804935Z 01O * using session charset: ASCII
2026-06-15T04:21:29.481465Z 01O * using options '--no-manual --ignore-vignettes'
2026-06-15T04:21:29.481640Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-06-15T04:21:29.483968Z 01O * this is package 'data.table' version '1.18.99'
2026-06-15T04:21:29.484099Z 01O * package encoding: UTF-8
2026-06-15T04:21:29.484254Z 01O * checking package namespace information ... OK
2026-06-15T04:21:29.490617Z 01O * checking package dependencies ... INFO
2026-06-15T04:21:30.560707Z 01O Packages suggested but not available for checking:
2026-06-15T04:21:30.560708Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-06-15T04:21:30.560709Z 01O 
2026-06-15T04:21:30.560710Z 01O Packages which this enhances but not available for checking:
2026-06-15T04:21:30.560710Z 01O   'knitr', 'xfun'
2026-06-15T04:21:30.560746Z 01O * checking if this is a source package ... OK
2026-06-15T04:21:30.562684Z 01O * checking if there is a namespace ... OK
2026-06-15T04:21:30.565506Z 01O * checking for .dll and .exe files ... OK
2026-06-15T04:21:30.565900Z 01O * checking for hidden files and directories ... OK
2026-06-15T04:21:30.567394Z 01O * checking for portable file names ... OK
2026-06-15T04:21:30.570570Z 01O * checking for sufficient/correct file permissions ... OK
2026-06-15T04:21:30.571747Z 01O * checking whether package 'data.table' can be installed ... OK
2026-06-15T04:21:42.544291Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-06-15T04:21:42.544519Z 01O * checking installed package size ... INFO
2026-06-15T04:21:42.548038Z 01O   installed size is  7.6Mb
2026-06-15T04:21:42.548584Z 01O   sub-directories of 1Mb or more:
2026-06-15T04:21:42.549076Z 01O     doc     1.1Mb
2026-06-15T04:21:42.549077Z 01O     libs    1.2Mb
2026-06-15T04:21:42.549077Z 01O     po      1.7Mb
2026-06-15T04:21:42.549078Z 01O     tests   2.2Mb
2026-06-15T04:21:42.549236Z 01O * checking package directory ... OK
2026-06-15T04:21:42.549523Z 01O * checking DESCRIPTION meta-information ... OK
2026-06-15T04:21:43.245586Z 01O * checking top-level files ... OK
2026-06-15T04:21:43.246145Z 01O * checking for left-over files ... OK
2026-06-15T04:21:43.247644Z 01O * checking index information ... OK
2026-06-15T04:21:43.301069Z 01O * checking package subdirectories ... OK
2026-06-15T04:21:43.405574Z 01O * checking code files for non-ASCII characters ... OK
2026-06-15T04:21:43.447595Z 01O * checking R files for syntax errors ... WARNING
2026-06-15T04:21:43.508435Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-06-15T04:21:43.508436Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-06-15T04:21:43.508518Z 01O * checking whether the package can be loaded ... OK
2026-06-15T04:21:43.692241Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-06-15T04:21:43.833678Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-06-15T04:21:43.979377Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-06-15T04:21:44.125280Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-06-15T04:21:44.315517Z 01O * checking loading without being on the library search path ... OK
2026-06-15T04:21:44.677445Z 01O * checking whether startup messages can be suppressed ... OK
2026-06-15T04:21:44.855745Z 01O * checking dependencies in R code ... OK
2026-06-15T04:21:45.438997Z 01O * checking S3 generic/method consistency ... OK
2026-06-15T04:21:45.761258Z 01O * checking replacement functions ... OK
2026-06-15T04:21:45.947197Z 01O * checking foreign function calls ... OK
2026-06-15T04:21:46.635934Z 01O * checking R code for possible problems ... OK
2026-06-15T04:21:56.446452Z 01O * checking Rd files ... OK
2026-06-15T04:21:56.983658Z 01O * checking Rd metadata ... OK
2026-06-15T04:21:57.020299Z 01O * checking Rd cross-references ... INFO
2026-06-15T04:22:00.731378Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-06-15T04:22:00.731462Z 01O * checking for missing documentation entries ... OK
2026-06-15T04:22:00.942599Z 01O * checking for code/documentation mismatches ... OK
2026-06-15T04:22:01.837120Z 01O * checking Rd \usage sections ... OK
2026-06-15T04:22:02.657440Z 01O * checking Rd contents ... OK
2026-06-15T04:22:03.049196Z 01O * checking for unstated dependencies in examples ... OK
2026-06-15T04:22:03.445140Z 01O * checking line endings in shell scripts ... OK
2026-06-15T04:22:03.445489Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-06-15T04:22:03.460144Z 01O * checking line endings in Makefiles ... OK
2026-06-15T04:22:03.460566Z 01O * checking compilation flags in Makevars ... OK
2026-06-15T04:22:03.505297Z 01O * checking for GNU extensions in Makefiles ... OK
2026-06-15T04:22:03.505849Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-06-15T04:22:03.506721Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-06-15T04:22:03.509955Z 01O * checking compiled code ... NOTE
2026-06-15T04:22:03.568287Z 01O File 'data.table/libs/data.table.so':
2026-06-15T04:22:03.568288Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-06-15T04:22:03.568288Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-06-15T04:22:03.568289Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-06-15T04:22:03.568734Z 01O 
2026-06-15T04:22:03.568734Z 01O Compiled code should not call non-API entry points in R.
2026-06-15T04:22:03.568735Z 01O 
2026-06-15T04:22:03.568735Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-06-15T04:22:03.568736Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-06-15T04:22:03.568736Z 01O non-API entry points.
2026-06-15T04:22:03.569058Z 01O * checking installed files from 'inst/doc' ... OK
2026-06-15T04:22:03.712083Z 01O * checking files in 'vignettes' ... SKIPPED
2026-06-15T04:22:03.712223Z 01O * checking examples ... OK
2026-06-15T04:22:06.941103Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-06-15T04:22:06.999237Z 01O * checking tests ...
2026-06-15T04:22:07.132892Z 01E   Running 'S4.R'
2026-06-15T04:22:07.426091Z 01E   Running 'autoprint.R'
2026-06-15T04:22:07.650891Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-06-15T04:22:07.656427Z 01E   Running 'froll.R'
2026-06-15T04:26:11.742799Z 01E   Running 'litedown.R'
2026-06-15T04:26:11.875105Z 01E   Running 'main.R'
2026-06-15T04:26:43.118523Z 01E   Running 'mergelist.R'
2026-06-15T04:26:44.590118Z 01E   Running 'nafill.R'
2026-06-15T04:26:44.966195Z 01E   Running 'optimize.R'
2026-06-15T04:26:46.110956Z 01E   Running 'other.R'
2026-06-15T04:26:46.294432Z 01E   Running 'programming.R'
2026-06-15T04:26:46.828193Z 01E   Running 'types.R'
2026-06-15T04:26:47.043408Z 01O  OK
2026-06-15T04:26:47.043765Z 01O * DONE
2026-06-15T04:26:47.044161Z 01E 
2026-06-15T04:26:47.044163Z 01O Status: 1 WARNING, 1 NOTE
2026-06-15T04:26:47.044308Z 01E See
2026-06-15T04:26:47.044308Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-06-15T04:26:47.044309Z 01E for details.
2026-06-15T04:26:47.044383Z 01E 
2026-06-15T04:26:47.190901Z 00O section_end:1781497607:step_script
2026-06-15T04:26:47.190910Z 00O+section_start:1781497607:after_script
2026-06-15T04:26:47.191301Z 00O+Running after_script
2026-06-15T04:26:47.488279Z 01O Running after script...
2026-06-15T04:26:47.488303Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-06-15T04:26:47.489123Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-06-15T04:26:47.489124Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-06-15T04:26:47.489124Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-06-15T04:26:47.489132Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-06-15T04:26:47.629574Z 00O section_end:1781497607:after_script
2026-06-15T04:26:47.629581Z 00O+section_start:1781497607:upload_artifacts_on_success
2026-06-15T04:26:47.630276Z 00O+Uploading artifacts for successful job
2026-06-15T04:26:47.969994Z 01O Uploading artifacts...
2026-06-15T04:26:48.019912Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-06-15T04:26:49.954928Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=c704e2371b874dfbae978548519471a4 id=14850332673 status=201 token=70_uqDzxx
2026-06-15T04:26:50.098198Z 00O section_end:1781497610:upload_artifacts_on_success
2026-06-15T04:26:50.098206Z 00O+section_start:1781497610:cleanup_file_variables
2026-06-15T04:26:50.098295Z 00O+Cleaning up project directory and file based variables
2026-06-15T04:26:50.510119Z 00O section_end:1781497610:cleanup_file_variables
2026-06-15T04:26:50.510125Z 00O+
2026-06-15T04:26:50.518823Z 00O Job succeeded