2026-05-14T04:21:29.488866Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-05-14T04:21:29.488878Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2026-05-14T04:21:29.488883Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-05-14T04:21:29.488901Z 00O Resolving secrets
2026-05-14T04:21:29.489019Z 00O section_start:1778732489:prepare_executor
2026-05-14T04:21:29.489020Z 00O+Preparing the "docker+machine" executor
2026-05-14T04:21:29.630621Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-14T04:21:33.761830Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-14T04:21:33.762430Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-05-14T04:21:33.762440Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-14T04:21:39.658911Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-14T04:21:39.658972Z 00O section_end:1778732499:prepare_executor
2026-05-14T04:21:39.658973Z 00O+section_start:1778732499:prepare_script
2026-05-14T04:21:39.659066Z 00O+Preparing environment
2026-05-14T04:21:39.659955Z 00O Using effective pull policy of [always] for container sha256:2ba07b7782c77cd11f54f107b54f8ca85bcf6e790fbe37940c14ef07d719da61
2026-05-14T04:21:44.745837Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1778732382-3ffac02b...
2026-05-14T04:21:44.926288Z 00O section_end:1778732504:prepare_script
2026-05-14T04:21:44.926291Z 00O+section_start:1778732504:get_sources
2026-05-14T04:21:44.926821Z 00O+Getting source from Git repository
2026-05-14T04:21:45.303696Z 01O Gitaly correlation ID: b07aaef2573145159643e66dda779d16
2026-05-14T04:21:45.312537Z 01O Fetching changes...
2026-05-14T04:21:45.316118Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-05-14T04:21:45.319267Z 01O Created fresh repository.
2026-05-14T04:21:51.256566Z 01O Checking out 188dd7b9 as detached HEAD (ref is master)...
2026-05-14T04:21:51.457584Z 01O 
2026-05-14T04:21:51.457587Z 01O Skipping Git submodules setup
2026-05-14T04:21:51.457588Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-05-14T04:21:51.696879Z 00O section_end:1778732511:get_sources
2026-05-14T04:21:51.696882Z 00O+section_start:1778732511:download_artifacts
2026-05-14T04:21:51.697575Z 00O+Downloading artifacts
2026-05-14T04:21:52.171158Z 01O Downloading artifacts for mirror-packages (14364355803)...
2026-05-14T04:21:53.319292Z 01E Downloading artifacts from coordinator... ok        correlation_id=c6c43eb9f10348dd8a1d787420882b99 host=storage.googleapis.com id=14364355803 responseStatus=200 OK token=6f_wtz-LB
2026-05-14T04:21:53.608707Z 01O Downloading artifacts for build (14364355804)...
2026-05-14T04:21:54.001762Z 01E Downloading artifacts from coordinator... ok        correlation_id=8a842a2e394a4f8584b9518bfa87a1c1 host=storage.googleapis.com id=14364355804 responseStatus=200 OK token=6f_wtz-LB
2026-05-14T04:21:54.804555Z 00O section_end:1778732514:download_artifacts
2026-05-14T04:21:54.804559Z 00O+section_start:1778732514:step_script
2026-05-14T04:21:54.804921Z 00O+Executing "step_script" stage of the job script
2026-05-14T04:21:54.804938Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-14T04:21:54.805906Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-14T04:21:55.164490Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-05-14T04:21:55.173190Z 01O $ mkdir -p ~/.R
2026-05-14T04:21:55.174523Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-05-14T04:21:55.174696Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-05-14T04:21:55.174826Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-05-14T04:21:55.348740Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-05-14T04:21:55.348809Z 01O * using R version 4.5.0 (2025-04-11)
2026-05-14T04:21:55.349073Z 01O * using platform: x86_64-pc-linux-gnu
2026-05-14T04:21:55.349370Z 01O * R was compiled by
2026-05-14T04:21:55.349531Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-05-14T04:21:55.349532Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-05-14T04:21:55.349785Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-05-14T04:21:55.350527Z 01O * using session charset: ASCII
2026-05-14T04:21:56.139615Z 01O * using options '--no-manual --ignore-vignettes'
2026-05-14T04:21:56.140010Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-05-14T04:21:56.142611Z 01O * this is package 'data.table' version '1.18.99'
2026-05-14T04:21:56.142884Z 01O * package encoding: UTF-8
2026-05-14T04:21:56.143100Z 01O * checking package namespace information ... OK
2026-05-14T04:21:56.150411Z 01O * checking package dependencies ... INFO
2026-05-14T04:21:57.181296Z 01O Packages suggested but not available for checking:
2026-05-14T04:21:57.181299Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-05-14T04:21:57.181300Z 01O 
2026-05-14T04:21:57.181300Z 01O Packages which this enhances but not available for checking:
2026-05-14T04:21:57.181301Z 01O   'knitr', 'xfun'
2026-05-14T04:21:57.181341Z 01O * checking if this is a source package ... OK
2026-05-14T04:21:57.184216Z 01O * checking if there is a namespace ... OK
2026-05-14T04:21:57.188504Z 01O * checking for .dll and .exe files ... OK
2026-05-14T04:21:57.189151Z 01O * checking for hidden files and directories ... OK
2026-05-14T04:21:57.192098Z 01O * checking for portable file names ... OK
2026-05-14T04:21:57.196087Z 01O * checking for sufficient/correct file permissions ... OK
2026-05-14T04:21:57.197788Z 01O * checking whether package 'data.table' can be installed ... OK
2026-05-14T04:22:10.955023Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-05-14T04:22:10.955384Z 01O * checking installed package size ... INFO
2026-05-14T04:22:10.959605Z 01O   installed size is  7.6Mb
2026-05-14T04:22:10.960679Z 01O   sub-directories of 1Mb or more:
2026-05-14T04:22:10.961252Z 01O     doc     1.1Mb
2026-05-14T04:22:10.961253Z 01O     libs    1.2Mb
2026-05-14T04:22:10.961253Z 01O     po      1.7Mb
2026-05-14T04:22:10.961254Z 01O     tests   2.2Mb
2026-05-14T04:22:10.961533Z 01O * checking package directory ... OK
2026-05-14T04:22:10.962004Z 01O * checking DESCRIPTION meta-information ... OK
2026-05-14T04:22:11.706226Z 01O * checking top-level files ... OK
2026-05-14T04:22:11.707112Z 01O * checking for left-over files ... OK
2026-05-14T04:22:11.709435Z 01O * checking index information ... OK
2026-05-14T04:22:11.771914Z 01O * checking package subdirectories ... OK
2026-05-14T04:22:11.896102Z 01O * checking code files for non-ASCII characters ... OK
2026-05-14T04:22:11.944881Z 01O * checking R files for syntax errors ... WARNING
2026-05-14T04:22:12.019035Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-05-14T04:22:12.019037Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-05-14T04:22:12.019215Z 01O * checking whether the package can be loaded ... OK
2026-05-14T04:22:12.218857Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-05-14T04:22:12.378884Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-05-14T04:22:12.534794Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-05-14T04:22:12.699293Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-05-14T04:22:12.897147Z 01O * checking loading without being on the library search path ... OK
2026-05-14T04:22:13.291164Z 01O * checking whether startup messages can be suppressed ... OK
2026-05-14T04:22:13.494988Z 01O * checking dependencies in R code ... OK
2026-05-14T04:22:14.229398Z 01O * checking S3 generic/method consistency ... OK
2026-05-14T04:22:14.586196Z 01O * checking replacement functions ... OK
2026-05-14T04:22:14.798948Z 01O * checking foreign function calls ... OK
2026-05-14T04:22:15.600585Z 01O * checking R code for possible problems ... OK
2026-05-14T04:22:26.799304Z 01O * checking Rd files ... OK
2026-05-14T04:22:27.415365Z 01O * checking Rd metadata ... OK
2026-05-14T04:22:27.458242Z 01O * checking Rd cross-references ... INFO
2026-05-14T04:22:31.224519Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-05-14T04:22:31.224647Z 01O * checking for missing documentation entries ... OK
2026-05-14T04:22:31.460460Z 01O * checking for code/documentation mismatches ... OK
2026-05-14T04:22:32.457809Z 01O * checking Rd \usage sections ... OK
2026-05-14T04:22:33.365064Z 01O * checking Rd contents ... OK
2026-05-14T04:22:33.816249Z 01O * checking for unstated dependencies in examples ... OK
2026-05-14T04:22:34.332772Z 01O * checking line endings in shell scripts ... OK
2026-05-14T04:22:34.333362Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-05-14T04:22:34.350575Z 01O * checking line endings in Makefiles ... OK
2026-05-14T04:22:34.351078Z 01O * checking compilation flags in Makevars ... OK
2026-05-14T04:22:34.404400Z 01O * checking for GNU extensions in Makefiles ... OK
2026-05-14T04:22:34.405211Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-05-14T04:22:34.406432Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-05-14T04:22:34.411962Z 01O * checking compiled code ... NOTE
2026-05-14T04:22:34.487744Z 01O File 'data.table/libs/data_table.so':
2026-05-14T04:22:34.487746Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-05-14T04:22:34.487747Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-05-14T04:22:34.487748Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-05-14T04:22:34.488332Z 01O 
2026-05-14T04:22:34.488333Z 01O Compiled code should not call non-API entry points in R.
2026-05-14T04:22:34.488334Z 01O 
2026-05-14T04:22:34.488334Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-05-14T04:22:34.488335Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-05-14T04:22:34.488336Z 01O non-API entry points.
2026-05-14T04:22:34.488697Z 01O * checking installed files from 'inst/doc' ... OK
2026-05-14T04:22:34.650943Z 01O * checking files in 'vignettes' ... SKIPPED
2026-05-14T04:22:34.651364Z 01O * checking examples ... OK
2026-05-14T04:22:38.151496Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-05-14T04:22:38.220073Z 01O * checking tests ...
2026-05-14T04:22:38.368762Z 01E   Running 'S4.R'
2026-05-14T04:22:38.687141Z 01E   Running 'autoprint.R'
2026-05-14T04:22:38.929239Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-05-14T04:22:38.936848Z 01E   Running 'froll.R'
2026-05-14T04:26:39.486841Z 01E   Running 'litedown.R'
2026-05-14T04:26:39.642784Z 01E   Running 'main.R'
2026-05-14T04:27:12.443998Z 01E   Running 'mergelist.R'
2026-05-14T04:27:14.049317Z 01E   Running 'nafill.R'
2026-05-14T04:27:14.463497Z 01E   Running 'optimize.R'
2026-05-14T04:27:15.741871Z 01E   Running 'other.R'
2026-05-14T04:27:15.955865Z 01E   Running 'programming.R'
2026-05-14T04:27:16.569135Z 01E   Running 'types.R'
2026-05-14T04:27:16.819757Z 01O  OK
2026-05-14T04:27:16.820175Z 01O * DONE
2026-05-14T04:27:16.820644Z 01E 
2026-05-14T04:27:16.820782Z 01O Status: 1 WARNING, 1 NOTE
2026-05-14T04:27:16.820932Z 01E See
2026-05-14T04:27:16.820933Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-05-14T04:27:16.820934Z 01E for details.
2026-05-14T04:27:16.821028Z 01E 
2026-05-14T04:27:17.010157Z 00O section_end:1778732837:step_script
2026-05-14T04:27:17.010160Z 00O+section_start:1778732837:after_script
2026-05-14T04:27:17.010566Z 00O+Running after_script
2026-05-14T04:27:17.354984Z 01O Running after script...
2026-05-14T04:27:17.355002Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-05-14T04:27:17.355974Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-05-14T04:27:17.355975Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-05-14T04:27:17.356084Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-05-14T04:27:17.356102Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-05-14T04:27:17.530165Z 00O section_end:1778732837:after_script
2026-05-14T04:27:17.530168Z 00O+section_start:1778732837:upload_artifacts_on_success
2026-05-14T04:27:17.530863Z 00O+Uploading artifacts for successful job
2026-05-14T04:27:17.949476Z 01O Uploading artifacts...
2026-05-14T04:27:18.030619Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-05-14T04:27:20.410778Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=7fb6a5c6fa18404484d26ea9ab970e21 id=14364355806 responseStatus=201 Created token=6f_wtz-LB
2026-05-14T04:27:20.594709Z 00O section_end:1778732840:upload_artifacts_on_success
2026-05-14T04:27:20.594717Z 00O+section_start:1778732840:cleanup_file_variables
2026-05-14T04:27:20.594850Z 00O+Cleaning up project directory and file based variables
2026-05-14T04:27:21.092469Z 00O section_end:1778732841:cleanup_file_variables
2026-05-14T04:27:21.092473Z 00O+
2026-05-14T04:27:21.104967Z 00O Job succeeded