2026-09-15T04:20:22.035443Z 00O Running with gitlab-runner 19.4.0~pre.1956.g7b010e09 (7b010e09)
2026-09-15T04:20:22.035471Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_JBYMyQCABXdu
2026-09-15T04:20:22.035474Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-09-15T04:20:22.035482Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true
2026-09-15T04:20:22.035508Z 00O Resolving secrets
2026-09-15T04:20:22.035679Z 00O section_start:1789446022:prepare_executor

2026-09-15T04:20:22.035682Z 00O+Preparing the "docker+machine" executor
2026-09-15T04:20:22.181116Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-09-15T04:20:22.181200Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:22.181266Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:22.182048Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:22.182061Z 00O Pulling docker image registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 ...
2026-09-15T04:20:23.266905Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.618419Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:24.618432Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:24.619252Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:24.619261Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-09-15T04:20:24.619752Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-09-15T04:20:24.619758Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-09-15T04:20:28.141064Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-09-15T04:20:28.141138Z 00O section_end:1789446028:prepare_executor

2026-09-15T04:20:28.141297Z 00O+section_start:1789446028:prepare_script

2026-09-15T04:20:28.141303Z 00O+Preparing environment
2026-09-15T04:20:28.141339Z 00O Using helper image:  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.4.0 )
2026-09-15T04:20:28.141352Z 00O Using effective pull policy of [always] for container registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09
2026-09-15T04:20:28.142106Z 00O Using docker image sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef for registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-7b010e09 with digest registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper@sha256:8f7a4e1b7200c3be6a618a55ea7c6747feab2aa22cb729b400ef95b5d7396360 ...
2026-09-15T04:20:28.142116Z 00O Using effective pull policy of [always] for container sha256:63a87ec6859e8e26664ce80c944c61f0336a93fcfcf17d898985365641731cef
2026-09-15T04:20:32.303534Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1789445962-63c7c65e...
2026-09-15T04:20:32.425423Z 00O section_end:1789446032:prepare_script

2026-09-15T04:20:32.425881Z 00O+section_start:1789446032:get_sources

2026-09-15T04:20:32.425887Z 00O+Getting source from Git repository
2026-09-15T04:20:32.647541Z 01O Gitaly correlation ID: 6b82a822799e49728c1ddad620e6a7f6
2026-09-15T04:20:32.650229Z 01O Fetching changes...
2026-09-15T04:20:32.651888Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-09-15T04:20:32.653183Z 01O Created fresh repository.
2026-09-15T04:20:36.261343Z 01O Checking out a3eeb4c0 as detached HEAD (ref is master)...
2026-09-15T04:20:36.367092Z 01O 
2026-09-15T04:20:36.367097Z 01O Skipping Git submodules setup
2026-09-15T04:20:36.367099Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-09-15T04:20:36.534604Z 00O section_end:1789446036:get_sources

2026-09-15T04:20:36.535328Z 00O+section_start:1789446036:download_artifacts

2026-09-15T04:20:36.535333Z 00O+Downloading artifacts
2026-09-15T04:20:36.776708Z 01O Downloading artifacts for mirror-packages (16501040599)...
2026-09-15T04:20:37.059787Z 01E Direct download from storage.googleapis.com         correlation_id=e3081410a63248ce8d797165ad7f093a id=16501040599 status=302 token=73_we1mzV
2026-09-15T04:20:37.613631Z 01E Downloading artifacts from coordinator... ok        correlation_id=e3081410a63248ce8d797165ad7f093a id=16501040599 status=302 token=73_we1mzV
2026-09-15T04:20:38.071134Z 01O Downloading artifacts for build (16501040600)...
2026-09-15T04:20:38.284513Z 01E Direct download from storage.googleapis.com         correlation_id=3dcfc14da1034e70aed9ee3d62bc3e2c id=16501040600 status=302 token=73_we1mzV
2026-09-15T04:20:38.495386Z 01E Downloading artifacts from coordinator... ok        correlation_id=3dcfc14da1034e70aed9ee3d62bc3e2c id=16501040600 status=302 token=73_we1mzV
2026-09-15T04:20:39.103062Z 00O section_end:1789446039:download_artifacts

2026-09-15T04:20:39.103584Z 00O+section_start:1789446039:step_script

2026-09-15T04:20:39.103592Z 00O+Executing "step_script" stage of the job script
2026-09-15T04:20:39.103600Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-09-15T04:20:39.104408Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-09-15T04:20:39.330596Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-09-15T04:20:39.334491Z 01O $ mkdir -p ~/.R
2026-09-15T04:20:39.335110Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-09-15T04:20:39.335135Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-09-15T04:20:39.335142Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-09-15T04:20:39.434108Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-09-15T04:20:39.434118Z 01O * using R version 4.5.0 (2025-04-11)
2026-09-15T04:20:39.434128Z 01O * using platform: x86_64-pc-linux-gnu
2026-09-15T04:20:39.434234Z 01O * R was compiled by
2026-09-15T04:20:39.434362Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-09-15T04:20:39.434363Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-09-15T04:20:39.434367Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-09-15T04:20:39.434786Z 01O * using session charset: ASCII
2026-09-15T04:20:39.889285Z 01O * using options '--no-manual --ignore-vignettes'
2026-09-15T04:20:39.889377Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-09-15T04:20:39.891106Z 01O * this is package 'data.table' version '1.18.99'
2026-09-15T04:20:39.891242Z 01O * package encoding: UTF-8
2026-09-15T04:20:39.891401Z 01O * checking package namespace information ... OK
2026-09-15T04:20:39.895851Z 01O * checking package dependencies ... INFO
2026-09-15T04:20:40.672655Z 01O Packages suggested but not available for checking:
2026-09-15T04:20:40.672658Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-09-15T04:20:40.672659Z 01O 
2026-09-15T04:20:40.672660Z 01O Packages which this enhances but not available for checking:
2026-09-15T04:20:40.672660Z 01O   'knitr', 'xfun'
2026-09-15T04:20:40.672684Z 01O * checking if this is a source package ... OK
2026-09-15T04:20:40.674134Z 01O * checking if there is a namespace ... OK
2026-09-15T04:20:40.676159Z 01O * checking for .dll and .exe files ... OK
2026-09-15T04:20:40.676463Z 01O * checking for hidden files and directories ... OK
2026-09-15T04:20:40.677474Z 01O * checking for portable file names ... OK
2026-09-15T04:20:40.679538Z 01O * checking for sufficient/correct file permissions ... OK
2026-09-15T04:20:40.680375Z 01O * checking whether package 'data.table' can be installed ... OK
2026-09-15T04:20:48.516917Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-09-15T04:20:48.516921Z 01O * checking installed package size ... INFO
2026-09-15T04:20:48.519254Z 01O   installed size is  7.7Mb
2026-09-15T04:20:48.519668Z 01O   sub-directories of 1Mb or more:
2026-09-15T04:20:48.519944Z 01O     doc     1.1Mb
2026-09-15T04:20:48.519945Z 01O     libs    1.2Mb
2026-09-15T04:20:48.519946Z 01O     po      1.7Mb
2026-09-15T04:20:48.519946Z 01O     tests   2.2Mb
2026-09-15T04:20:48.520029Z 01O * checking package directory ... OK
2026-09-15T04:20:48.520289Z 01O * checking DESCRIPTION meta-information ... OK
2026-09-15T04:20:48.957809Z 01O * checking top-level files ... OK
2026-09-15T04:20:48.958125Z 01O * checking for left-over files ... OK
2026-09-15T04:20:48.959239Z 01O * checking index information ... OK
2026-09-15T04:20:48.993454Z 01O * checking package subdirectories ... OK
2026-09-15T04:20:49.060970Z 01O * checking code files for non-ASCII characters ... OK
2026-09-15T04:20:49.087024Z 01O * checking R files for syntax errors ... WARNING
2026-09-15T04:20:49.126202Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-09-15T04:20:49.126204Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-09-15T04:20:49.126208Z 01O * checking whether the package can be loaded ... OK
2026-09-15T04:20:49.242487Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-09-15T04:20:49.334675Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-09-15T04:20:49.427808Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-09-15T04:20:49.520023Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-09-15T04:20:49.641114Z 01O * checking loading without being on the library search path ... OK
2026-09-15T04:20:49.874401Z 01O * checking whether startup messages can be suppressed ... OK
2026-09-15T04:20:49.987685Z 01O * checking dependencies in R code ... OK
2026-09-15T04:20:50.382299Z 01O * checking S3 generic/method consistency ... OK
2026-09-15T04:20:50.590265Z 01O * checking replacement functions ... OK
2026-09-15T04:20:50.708472Z 01O * checking foreign function calls ... OK
2026-09-15T04:20:51.178353Z 01O * checking R code for possible problems ... OK
2026-09-15T04:20:57.271654Z 01O * checking Rd files ... OK
2026-09-15T04:20:57.597836Z 01O * checking Rd metadata ... OK
2026-09-15T04:20:57.619871Z 01O * checking Rd cross-references ... INFO
2026-09-15T04:21:00.916046Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-09-15T04:21:00.916052Z 01O * checking for missing documentation entries ... OK
2026-09-15T04:21:01.057657Z 01O * checking for code/documentation mismatches ... OK
2026-09-15T04:21:01.747468Z 01O * checking Rd \usage sections ... OK
2026-09-15T04:21:02.357049Z 01O * checking Rd contents ... OK
2026-09-15T04:21:02.650181Z 01O * checking for unstated dependencies in examples ... OK
2026-09-15T04:21:02.951892Z 01O * checking line endings in shell scripts ... OK
2026-09-15T04:21:02.952120Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-09-15T04:21:02.961748Z 01O * checking line endings in Makefiles ... OK
2026-09-15T04:21:02.962060Z 01O * checking compilation flags in Makevars ... OK
2026-09-15T04:21:02.992982Z 01O * checking for GNU extensions in Makefiles ... OK
2026-09-15T04:21:02.993358Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-09-15T04:21:02.993947Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-09-15T04:21:02.996308Z 01O * checking compiled code ... NOTE
2026-09-15T04:21:03.034535Z 01O File 'data.table/libs/data.table.so':
2026-09-15T04:21:03.034536Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-09-15T04:21:03.034537Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-09-15T04:21:03.034538Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-09-15T04:21:03.034882Z 01O 
2026-09-15T04:21:03.034883Z 01O Compiled code should not call non-API entry points in R.
2026-09-15T04:21:03.034884Z 01O 
2026-09-15T04:21:03.034884Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-09-15T04:21:03.034885Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-09-15T04:21:03.034885Z 01O non-API entry points.
2026-09-15T04:21:03.035071Z 01O * checking installed files from 'inst/doc' ... OK
2026-09-15T04:21:03.132134Z 01O * checking files in 'vignettes' ... SKIPPED
2026-09-15T04:21:03.132369Z 01O * checking examples ... OK
2026-09-15T04:21:05.799607Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-09-15T04:21:05.836407Z 01O * checking tests ...
2026-09-15T04:21:05.924441Z 01E   Running 'S4.R'
2026-09-15T04:21:06.111715Z 01E   Running 'autoprint.R'
2026-09-15T04:21:06.252208Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-09-15T04:21:06.255920Z 01E   Running 'froll.R'
2026-09-15T04:23:30.384337Z 01E   Running 'litedown.R'
2026-09-15T04:23:30.474719Z 01E   Running 'main.R'
2026-09-15T04:23:53.968534Z 01E   Running 'mergelist.R'
2026-09-15T04:23:54.908314Z 01E   Running 'nafill.R'
2026-09-15T04:23:55.161422Z 01E   Running 'optimize.R'
2026-09-15T04:23:55.941512Z 01E   Running 'other.R'
2026-09-15T04:23:56.076794Z 01E   Running 'programming.R'
2026-09-15T04:23:56.480708Z 01E   Running 'self.R'
2026-09-15T04:23:56.626144Z 01E   Running 'types.R'
2026-09-15T04:23:56.778529Z 01O  OK
2026-09-15T04:23:56.778740Z 01O * DONE
2026-09-15T04:23:56.779026Z 01E 
2026-09-15T04:23:56.779089Z 01O Status: 1 WARNING, 1 NOTE
2026-09-15T04:23:56.779269Z 01E See
2026-09-15T04:23:56.779270Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-09-15T04:23:56.779271Z 01E for details.
2026-09-15T04:23:56.779274Z 01E 
2026-09-15T04:23:56.920120Z 00O section_end:1789446236:step_script

2026-09-15T04:23:56.920579Z 00O+section_start:1789446236:after_script

2026-09-15T04:23:56.920585Z 00O+Running after_script
2026-09-15T04:23:57.154586Z 01O Running after script...
2026-09-15T04:23:57.154608Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-09-15T04:23:57.155068Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-09-15T04:23:57.155073Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-09-15T04:23:57.155091Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-09-15T04:23:57.155095Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-09-15T04:23:57.280615Z 00O section_end:1789446237:after_script

2026-09-15T04:23:57.281959Z 00O+section_start:1789446237:upload_artifacts_on_success

2026-09-15T04:23:57.281966Z 00O+Uploading artifacts for successful job
2026-09-15T04:23:57.565584Z 01O Uploading artifacts...
2026-09-15T04:23:57.602623Z 01E bus/test-lin-rel-vanilla: found 701 matching artifact files and directories 
2026-09-15T04:23:59.263203Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=2010fdf8951548fab9e2971449ce7396 id=16501040602 status=201 token=73_we1mzV
2026-09-15T04:23:59.397476Z 00O section_end:1789446239:upload_artifacts_on_success

2026-09-15T04:23:59.397817Z 00O+section_start:1789446239:cleanup_file_variables

2026-09-15T04:23:59.397823Z 00O+Cleaning up project directory and file based variables
2026-09-15T04:23:59.768115Z 00O section_end:1789446239:cleanup_file_variables

2026-09-15T04:23:59.777241Z 00O Job succeeded