2026-02-15T04:25:58.697714Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2026-02-15T04:25:58.697728Z 00O   on blue-1.saas-linux-medium.runners-manager.gitlab.com/default 2QMMJaNnp, system ID: s_406404729ae4
2026-02-15T04:25:58.697748Z 00O Resolving secrets
2026-02-15T04:25:58.697859Z 00O section_start:1771129558:prepare_executor
2026-02-15T04:25:58.697860Z 00O+Preparing the "docker+machine" executor
2026-02-15T04:25:58.823332Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-02-15T04:26:02.885700Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-02-15T04:26:02.886199Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-02-15T04:26:02.886209Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-02-15T04:26:08.613749Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-02-15T04:26:08.613823Z 00O section_end:1771129568:prepare_executor
2026-02-15T04:26:08.613824Z 00O+section_start:1771129568:prepare_script
2026-02-15T04:26:08.613897Z 00O+Preparing environment
2026-02-15T04:26:08.614647Z 00O Using effective pull policy of [always] for container sha256:545aca74219c85dc85889d1d4354164ba07b209ffa56c7b505aadc9b417e0c22
2026-02-15T04:26:13.599053Z 01O Running on runner-2qmmjannp-project-3622566-concurrent-0 via runner-2qmmjannp-s-l-m-amd64-1771129507-82d66c9c...
2026-02-15T04:26:13.762221Z 00O section_end:1771129573:prepare_script
2026-02-15T04:26:13.762229Z 00O+section_start:1771129573:get_sources
2026-02-15T04:26:13.762746Z 00O+Getting source from Git repository
2026-02-15T04:26:14.099091Z 01O Gitaly correlation ID: ef6a6cd3228f4001ad707436ccfcc0b5
2026-02-15T04:26:14.103842Z 01O Fetching changes...
2026-02-15T04:26:14.106859Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-02-15T04:26:14.108847Z 01O Created fresh repository.
2026-02-15T04:26:19.613184Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)...
2026-02-15T04:26:19.801399Z 01O 
2026-02-15T04:26:19.801402Z 01O Skipping Git submodules setup
2026-02-15T04:26:19.801402Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-02-15T04:26:20.039828Z 00O section_end:1771129580:get_sources
2026-02-15T04:26:20.039832Z 00O+section_start:1771129580:download_artifacts
2026-02-15T04:26:20.041543Z 00O+Downloading artifacts
2026-02-15T04:26:20.405004Z 01O Downloading artifacts for mirror-packages (13120362981)...
2026-02-15T04:26:21.441008Z 01E Downloading artifacts from coordinator... ok        correlation_id=1a10920d358c48949a549bbecfd8f4aa host=storage.googleapis.com id=13120362981 responseStatus=200 OK token=6c_Xd7yDA
2026-02-15T04:26:21.660979Z 01O Downloading artifacts for build (13120362982)...
2026-02-15T04:26:22.087796Z 01E Downloading artifacts from coordinator... ok        correlation_id=9380ba9d2bdf462aa67c22d135735b4f host=storage.googleapis.com id=13120362982 responseStatus=200 OK token=6c_Xd7yDA
2026-02-15T04:26:22.783840Z 00O section_end:1771129582:download_artifacts
2026-02-15T04:26:22.783846Z 00O+section_start:1771129582:step_script
2026-02-15T04:26:22.784242Z 00O+Executing "step_script" stage of the job script
2026-02-15T04:26:22.784261Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-02-15T04:26:22.785022Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-02-15T04:26:23.105331Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-02-15T04:26:23.113506Z 01O $ mkdir -p ~/.R
2026-02-15T04:26:23.114479Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-02-15T04:26:23.114546Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-02-15T04:26:23.114692Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-02-15T04:26:23.281138Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-02-15T04:26:23.281225Z 01O * using R version 4.5.0 (2025-04-11)
2026-02-15T04:26:23.281475Z 01O * using platform: x86_64-pc-linux-gnu
2026-02-15T04:26:23.281678Z 01O * R was compiled by
2026-02-15T04:26:23.281828Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-02-15T04:26:23.281829Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-02-15T04:26:23.282053Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-02-15T04:26:23.282706Z 01O * using session charset: ASCII
2026-02-15T04:26:24.019801Z 01O * using options '--no-manual --ignore-vignettes'
2026-02-15T04:26:24.020202Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-02-15T04:26:24.022665Z 01O * this is package 'data.table' version '1.18.99'
2026-02-15T04:26:24.022797Z 01O * package encoding: UTF-8
2026-02-15T04:26:24.023033Z 01O * checking package namespace information ... OK
2026-02-15T04:26:24.029576Z 01O * checking package dependencies ... INFO
2026-02-15T04:26:24.907891Z 01O Packages suggested but not available for checking:
2026-02-15T04:26:24.907893Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-02-15T04:26:24.907894Z 01O 
2026-02-15T04:26:24.907894Z 01O Packages which this enhances but not available for checking:
2026-02-15T04:26:24.907895Z 01O   'knitr', 'xfun'
2026-02-15T04:26:24.908011Z 01O * checking if this is a source package ... OK
2026-02-15T04:26:24.910801Z 01O * checking if there is a namespace ... OK
2026-02-15T04:26:24.914509Z 01O * checking for .dll and .exe files ... OK
2026-02-15T04:26:24.914998Z 01O * checking for hidden files and directories ... OK
2026-02-15T04:26:24.917930Z 01O * checking for portable file names ... OK
2026-02-15T04:26:24.921935Z 01O * checking for sufficient/correct file permissions ... OK
2026-02-15T04:26:24.923477Z 01O * checking whether package 'data.table' can be installed ... OK
2026-02-15T04:26:36.254187Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-02-15T04:26:36.254579Z 01O * checking installed package size ... INFO
2026-02-15T04:26:36.258341Z 01O   installed size is  7.5Mb
2026-02-15T04:26:36.258950Z 01O   sub-directories of 1Mb or more:
2026-02-15T04:26:36.259370Z 01O     doc     1.1Mb
2026-02-15T04:26:36.259371Z 01O     libs    1.2Mb
2026-02-15T04:26:36.259371Z 01O     po      1.7Mb
2026-02-15T04:26:36.259372Z 01O     tests   2.2Mb
2026-02-15T04:26:36.259574Z 01O * checking package directory ... OK
2026-02-15T04:26:36.259948Z 01O * checking DESCRIPTION meta-information ... OK
2026-02-15T04:26:36.931783Z 01O * checking top-level files ... OK
2026-02-15T04:26:36.932455Z 01O * checking for left-over files ... OK
2026-02-15T04:26:36.934419Z 01O * checking index information ... OK
2026-02-15T04:26:36.992265Z 01O * checking package subdirectories ... OK
2026-02-15T04:26:37.103594Z 01O * checking code files for non-ASCII characters ... OK
2026-02-15T04:26:37.146923Z 01O * checking R files for syntax errors ... WARNING
2026-02-15T04:26:37.210348Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-02-15T04:26:37.210352Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-02-15T04:26:37.210500Z 01O * checking whether the package can be loaded ... OK
2026-02-15T04:26:37.388788Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-02-15T04:26:37.526923Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-02-15T04:26:37.666859Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-02-15T04:26:37.812237Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-02-15T04:26:38.003133Z 01O * checking loading without being on the library search path ... OK
2026-02-15T04:26:38.378321Z 01O * checking whether startup messages can be suppressed ... OK
2026-02-15T04:26:38.551112Z 01O * checking dependencies in R code ... OK
2026-02-15T04:26:39.128727Z 01O * checking S3 generic/method consistency ... OK
2026-02-15T04:26:39.421830Z 01O * checking replacement functions ... OK
2026-02-15T04:26:39.581946Z 01O * checking foreign function calls ... OK
2026-02-15T04:26:40.265525Z 01O * checking R code for possible problems ... OK
2026-02-15T04:26:50.283746Z 01O * checking Rd files ... OK
2026-02-15T04:26:50.868160Z 01O * checking Rd metadata ... OK
2026-02-15T04:26:50.907111Z 01O * checking Rd cross-references ... INFO
2026-02-15T04:26:54.184060Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-02-15T04:26:54.184225Z 01O * checking for missing documentation entries ... OK
2026-02-15T04:26:54.388865Z 01O * checking for code/documentation mismatches ... OK
2026-02-15T04:26:55.263669Z 01O * checking Rd \usage sections ... OK
2026-02-15T04:26:56.033380Z 01O * checking Rd contents ... OK
2026-02-15T04:26:56.433644Z 01O * checking for unstated dependencies in examples ... OK
2026-02-15T04:26:56.836682Z 01O * checking line endings in shell scripts ... OK
2026-02-15T04:26:56.837185Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-02-15T04:26:56.856804Z 01O * checking line endings in Makefiles ... OK
2026-02-15T04:26:56.857303Z 01O * checking compilation flags in Makevars ... OK
2026-02-15T04:26:56.903018Z 01O * checking for GNU extensions in Makefiles ... OK
2026-02-15T04:26:56.903721Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-02-15T04:26:56.904722Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-02-15T04:26:56.909813Z 01O * checking compiled code ... NOTE
2026-02-15T04:26:56.968714Z 01O File 'data.table/libs/data_table.so':
2026-02-15T04:26:56.968715Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'SETLENGTH',
2026-02-15T04:26:56.968716Z 01O     'SET_GROWABLE_BIT', 'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-02-15T04:26:56.969233Z 01O 
2026-02-15T04:26:56.969234Z 01O Compiled code should not call non-API entry points in R.
2026-02-15T04:26:56.969235Z 01O 
2026-02-15T04:26:56.969235Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-02-15T04:26:56.969236Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-02-15T04:26:56.969236Z 01O non-API entry points.
2026-02-15T04:26:56.969580Z 01O * checking installed files from 'inst/doc' ... OK
2026-02-15T04:26:57.108778Z 01O * checking files in 'vignettes' ... SKIPPED
2026-02-15T04:26:57.109227Z 01O * checking examples ... OK
2026-02-15T04:27:00.311601Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-02-15T04:27:00.370995Z 01O * checking tests ...
2026-02-15T04:27:00.497368Z 01E   Running 'S4.R'
2026-02-15T04:27:00.773006Z 01E   Running 'autoprint.R'
2026-02-15T04:27:00.989934Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-02-15T04:27:00.995406Z 01E   Running 'froll.R'
2026-02-15T04:30:49.418978Z 01E   Running 'litedown.R'
2026-02-15T04:30:49.558307Z 01E   Running 'main.R'
2026-02-15T04:31:18.299546Z 01E   Running 'mergelist.R'
2026-02-15T04:31:19.670978Z 01E   Running 'nafill.R'
2026-02-15T04:31:20.034799Z 01E   Running 'optimize.R'
2026-02-15T04:31:21.116921Z 01E   Running 'other.R'
2026-02-15T04:31:21.300037Z 01E   Running 'programming.R'
2026-02-15T04:31:21.813703Z 01E   Running 'types.R'
2026-02-15T04:31:22.026569Z 01O  OK
2026-02-15T04:31:22.026995Z 01O * DONE
2026-02-15T04:31:22.027402Z 01E 
2026-02-15T04:31:22.027534Z 01O Status: 1 WARNING, 1 NOTE
2026-02-15T04:31:22.027677Z 01E See
2026-02-15T04:31:22.027678Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-02-15T04:31:22.027679Z 01E for details.
2026-02-15T04:31:22.027806Z 01E 
2026-02-15T04:31:22.203365Z 00O section_end:1771129882:step_script
2026-02-15T04:31:22.203371Z 00O+section_start:1771129882:after_script
2026-02-15T04:31:22.203794Z 00O+Running after_script
2026-02-15T04:31:22.538861Z 01O Running after script...
2026-02-15T04:31:22.538887Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-02-15T04:31:22.539902Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-02-15T04:31:22.539909Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-02-15T04:31:22.540026Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-02-15T04:31:22.540076Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-02-15T04:31:22.701730Z 00O section_end:1771129882:after_script
2026-02-15T04:31:22.701737Z 00O+section_start:1771129882:upload_artifacts_on_success
2026-02-15T04:31:22.702398Z 00O+Uploading artifacts for successful job
2026-02-15T04:31:23.076350Z 01O Uploading artifacts...
2026-02-15T04:31:23.138981Z 01E bus/test-lin-rel-vanilla: found 693 matching artifact files and directories 
2026-02-15T04:31:25.247550Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=161494e6aefe45889fbbd09c7cd6ea16 id=13120362984 responseStatus=201 Created token=6c_Xd7yDA
2026-02-15T04:31:25.418153Z 00O section_end:1771129885:upload_artifacts_on_success
2026-02-15T04:31:25.418158Z 00O+section_start:1771129885:cleanup_file_variables
2026-02-15T04:31:25.418239Z 00O+Cleaning up project directory and file based variables
2026-02-15T04:31:25.901401Z 00O section_end:1771129885:cleanup_file_variables
2026-02-15T04:31:25.901406Z 00O+
2026-02-15T04:31:25.911454Z 00O Job succeeded