2026-05-01T04:21:38.408117Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-05-01T04:21:38.408126Z 00O   on blue-1.saas-linux-medium.runners-manager.gitlab.com/default 2QMMJaNnp, system ID: s_406404729ae4
2026-05-01T04:21:38.408132Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-05-01T04:21:38.408149Z 00O Resolving secrets
2026-05-01T04:21:38.408262Z 00O section_start:1777609298:prepare_executor
2026-05-01T04:21:38.408263Z 00O+Preparing the "docker+machine" executor
2026-05-01T04:21:38.537022Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-01T04:21:42.553165Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-01T04:21:42.553711Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-05-01T04:21:42.553721Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-05-01T04:21:48.291687Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-01T04:21:48.291772Z 00O section_end:1777609308:prepare_executor
2026-05-01T04:21:48.291773Z 00O+section_start:1777609308:prepare_script
2026-05-01T04:21:48.291860Z 00O+Preparing environment
2026-05-01T04:21:48.292678Z 00O Using effective pull policy of [always] for container sha256:c2f0dc52b238ab5c21d97cc7494ac3ec6865e2b56fcdda7da4d84150e8f02eee
2026-05-01T04:21:53.368528Z 01O Running on runner-2qmmjannp-project-3622566-concurrent-0 via runner-2qmmjannp-s-l-m-amd64-1777609244-71fa4a46...
2026-05-01T04:21:53.546567Z 00O section_end:1777609313:prepare_script
2026-05-01T04:21:53.546574Z 00O+section_start:1777609313:get_sources
2026-05-01T04:21:53.547083Z 00O+Getting source from Git repository
2026-05-01T04:21:53.923900Z 01O Gitaly correlation ID: 008a8d43a1f54440803b8c3c1aa92d45
2026-05-01T04:21:53.931114Z 01O Fetching changes...
2026-05-01T04:21:53.934693Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-05-01T04:21:53.937152Z 01O Created fresh repository.
2026-05-01T04:21:59.545775Z 01O Checking out 289a1ec3 as detached HEAD (ref is master)...
2026-05-01T04:21:59.732863Z 01O 
2026-05-01T04:21:59.732871Z 01O Skipping Git submodules setup
2026-05-01T04:21:59.732872Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-05-01T04:21:59.973940Z 00O section_end:1777609319:get_sources
2026-05-01T04:21:59.973949Z 00O+section_start:1777609319:download_artifacts
2026-05-01T04:21:59.975661Z 00O+Downloading artifacts
2026-05-01T04:22:00.394305Z 01O Downloading artifacts for build (14173257970)...
2026-05-01T04:22:00.709647Z 01E Downloading artifacts from coordinator... ok        correlation_id=08d46d7a3c724f42b223775f0e05cbdb host=storage.googleapis.com id=14173257970 responseStatus=200 OK token=6e_tzGzqa
2026-05-01T04:22:00.726192Z 01O Downloading artifacts for mirror-packages (14173257969)...
2026-05-01T04:22:01.834880Z 01E Downloading artifacts from coordinator... ok        correlation_id=306122c8c669495bb6b50f8dbb55793e host=storage.googleapis.com id=14173257969 responseStatus=200 OK token=6e_tzGzqa
2026-05-01T04:22:02.876332Z 00O section_end:1777609322:download_artifacts
2026-05-01T04:22:02.876339Z 00O+section_start:1777609322:step_script
2026-05-01T04:22:02.876791Z 00O+Executing "step_script" stage of the job script
2026-05-01T04:22:02.876809Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-05-01T04:22:02.877581Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-05-01T04:22:03.238013Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-05-01T04:22:03.247398Z 01O $ mkdir -p ~/.R
2026-05-01T04:22:03.248800Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-05-01T04:22:03.248896Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-05-01T04:22:03.248938Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-05-01T04:22:03.419547Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-05-01T04:22:03.419631Z 01O * using R version 4.5.0 (2025-04-11)
2026-05-01T04:22:03.419894Z 01O * using platform: x86_64-pc-linux-gnu
2026-05-01T04:22:03.420151Z 01O * R was compiled by
2026-05-01T04:22:03.420523Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-05-01T04:22:03.420523Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-05-01T04:22:03.420524Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-05-01T04:22:03.421261Z 01O * using session charset: ASCII
2026-05-01T04:22:04.192921Z 01O * using options '--no-manual --ignore-vignettes'
2026-05-01T04:22:04.193266Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-05-01T04:22:04.195920Z 01O * this is package 'data.table' version '1.18.99'
2026-05-01T04:22:04.196252Z 01O * package encoding: UTF-8
2026-05-01T04:22:04.196520Z 01O * checking package namespace information ... OK
2026-05-01T04:22:04.203901Z 01O * checking package dependencies ... INFO
2026-05-01T04:22:07.994359Z 01O Packages suggested but not available for checking:
2026-05-01T04:22:07.994362Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-05-01T04:22:07.994363Z 01O 
2026-05-01T04:22:07.994364Z 01O Packages which this enhances but not available for checking:
2026-05-01T04:22:07.994364Z 01O   'knitr', 'xfun'
2026-05-01T04:22:07.994454Z 01O * checking if this is a source package ... OK
2026-05-01T04:22:07.997302Z 01O * checking if there is a namespace ... OK
2026-05-01T04:22:08.001111Z 01O * checking for .dll and .exe files ... OK
2026-05-01T04:22:08.001633Z 01O * checking for hidden files and directories ... OK
2026-05-01T04:22:08.004388Z 01O * checking for portable file names ... OK
2026-05-01T04:22:08.008173Z 01O * checking for sufficient/correct file permissions ... OK
2026-05-01T04:22:08.009801Z 01O * checking whether package 'data.table' can be installed ... OK
2026-05-01T04:22:21.480884Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-05-01T04:22:21.481113Z 01O * checking installed package size ... INFO
2026-05-01T04:22:21.485568Z 01O   installed size is  7.6Mb
2026-05-01T04:22:21.486321Z 01O   sub-directories of 1Mb or more:
2026-05-01T04:22:21.486804Z 01O     doc     1.1Mb
2026-05-01T04:22:21.486804Z 01O     libs    1.2Mb
2026-05-01T04:22:21.486805Z 01O     po      1.7Mb
2026-05-01T04:22:21.486805Z 01O     tests   2.2Mb
2026-05-01T04:22:21.486960Z 01O * checking package directory ... OK
2026-05-01T04:22:21.487428Z 01O * checking DESCRIPTION meta-information ... OK
2026-05-01T04:22:22.223890Z 01O * checking top-level files ... OK
2026-05-01T04:22:22.224561Z 01O * checking for left-over files ... OK
2026-05-01T04:22:22.226995Z 01O * checking index information ... OK
2026-05-01T04:22:22.288967Z 01O * checking package subdirectories ... OK
2026-05-01T04:22:22.422073Z 01O * checking code files for non-ASCII characters ... OK
2026-05-01T04:22:22.469507Z 01O * checking R files for syntax errors ... WARNING
2026-05-01T04:22:22.540032Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-05-01T04:22:22.540034Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-05-01T04:22:22.540125Z 01O * checking whether the package can be loaded ... OK
2026-05-01T04:22:22.734648Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-05-01T04:22:22.882948Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-05-01T04:22:23.031406Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-05-01T04:22:23.187242Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-05-01T04:22:23.380657Z 01O * checking loading without being on the library search path ... OK
2026-05-01T04:22:23.761453Z 01O * checking whether startup messages can be suppressed ... OK
2026-05-01T04:22:23.953768Z 01O * checking dependencies in R code ... OK
2026-05-01T04:22:24.648211Z 01O * checking S3 generic/method consistency ... OK
2026-05-01T04:22:24.987683Z 01O * checking replacement functions ... OK
2026-05-01T04:22:25.179272Z 01O * checking foreign function calls ... OK
2026-05-01T04:22:25.946790Z 01O * checking R code for possible problems ... OK
2026-05-01T04:22:36.749637Z 01O * checking Rd files ... OK
2026-05-01T04:22:37.353661Z 01O * checking Rd metadata ... OK
2026-05-01T04:22:37.396563Z 01O * checking Rd cross-references ... INFO
2026-05-01T04:22:40.891096Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-05-01T04:22:40.891201Z 01O * checking for missing documentation entries ... OK
2026-05-01T04:22:41.116099Z 01O * checking for code/documentation mismatches ... OK
2026-05-01T04:22:42.084467Z 01O * checking Rd \usage sections ... OK
2026-05-01T04:22:42.987355Z 01O * checking Rd contents ... OK
2026-05-01T04:22:43.440121Z 01O * checking for unstated dependencies in examples ... OK
2026-05-01T04:22:43.923729Z 01O * checking line endings in shell scripts ... OK
2026-05-01T04:22:43.924216Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-05-01T04:22:43.941380Z 01O * checking line endings in Makefiles ... OK
2026-05-01T04:22:43.941887Z 01O * checking compilation flags in Makevars ... OK
2026-05-01T04:22:43.992342Z 01O * checking for GNU extensions in Makefiles ... OK
2026-05-01T04:22:43.993074Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-05-01T04:22:43.994218Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-05-01T04:22:43.999698Z 01O * checking compiled code ... NOTE
2026-05-01T04:22:44.066440Z 01O File 'data.table/libs/data_table.so':
2026-05-01T04:22:44.066441Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-05-01T04:22:44.066442Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-05-01T04:22:44.066443Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-05-01T04:22:44.067055Z 01O 
2026-05-01T04:22:44.067056Z 01O Compiled code should not call non-API entry points in R.
2026-05-01T04:22:44.067057Z 01O 
2026-05-01T04:22:44.067057Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-05-01T04:22:44.067058Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-05-01T04:22:44.067059Z 01O non-API entry points.
2026-05-01T04:22:44.067362Z 01O * checking installed files from 'inst/doc' ... OK
2026-05-01T04:22:44.217799Z 01O * checking files in 'vignettes' ... SKIPPED
2026-05-01T04:22:44.218124Z 01O * checking examples ... OK
2026-05-01T04:22:47.613000Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-05-01T04:22:47.675163Z 01O * checking tests ...
2026-05-01T04:22:47.816919Z 01E   Running 'S4.R'
2026-05-01T04:22:48.116427Z 01E   Running 'autoprint.R'
2026-05-01T04:22:48.347584Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-05-01T04:22:48.353720Z 01E   Running 'froll.R'
2026-05-01T04:26:51.135255Z 01E   Running 'litedown.R'
2026-05-01T04:26:51.278314Z 01E   Running 'main.R'
2026-05-01T04:27:22.366014Z 01E   Running 'mergelist.R'
2026-05-01T04:27:23.847188Z 01E   Running 'nafill.R'
2026-05-01T04:27:24.235488Z 01E   Running 'optimize.R'
2026-05-01T04:27:25.442721Z 01E   Running 'other.R'
2026-05-01T04:27:25.638920Z 01E   Running 'programming.R'
2026-05-01T04:27:26.194756Z 01E   Running 'types.R'
2026-05-01T04:27:26.427427Z 01O  OK
2026-05-01T04:27:26.427834Z 01O * DONE
2026-05-01T04:27:26.428267Z 01E 
2026-05-01T04:27:26.428376Z 01O Status: 1 WARNING, 1 NOTE
2026-05-01T04:27:26.428593Z 01E See
2026-05-01T04:27:26.428593Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-05-01T04:27:26.428594Z 01E for details.
2026-05-01T04:27:26.428750Z 01E 
2026-05-01T04:27:26.622271Z 00O section_end:1777609646:step_script
2026-05-01T04:27:26.622277Z 00O+section_start:1777609646:after_script
2026-05-01T04:27:26.622668Z 00O+Running after_script
2026-05-01T04:27:26.971467Z 01O Running after script...
2026-05-01T04:27:26.971490Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-05-01T04:27:26.972379Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-05-01T04:27:26.972382Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-05-01T04:27:26.972537Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-05-01T04:27:26.972541Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-05-01T04:27:27.139757Z 00O section_end:1777609647:after_script
2026-05-01T04:27:27.139763Z 00O+section_start:1777609647:upload_artifacts_on_success
2026-05-01T04:27:27.140568Z 00O+Uploading artifacts for successful job
2026-05-01T04:27:27.543008Z 01O Uploading artifacts...
2026-05-01T04:27:27.621524Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-05-01T04:27:29.915761Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=ec6e6b97c1a94938852624391f7839ef id=14173257972 responseStatus=201 Created token=6e_tzGzqa
2026-05-01T04:27:30.090889Z 00O section_end:1777609650:upload_artifacts_on_success
2026-05-01T04:27:30.090895Z 00O+section_start:1777609650:cleanup_file_variables
2026-05-01T04:27:30.091008Z 00O+Cleaning up project directory and file based variables
2026-05-01T04:27:30.587278Z 00O section_end:1777609650:cleanup_file_variables
2026-05-01T04:27:30.587285Z 00O+
2026-05-01T04:27:30.599693Z 00O Job succeeded