2026-03-17T04:21:34.328240Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90)
2026-03-17T04:21:34.328250Z 00O   on blue-3.saas-linux-medium-amd64.runners-manager.gitlab.com/default U4xQPDyhm, system ID: s_b59597d5b921
2026-03-17T04:21:34.328255Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true
2026-03-17T04:21:34.328272Z 00O Resolving secrets
2026-03-17T04:21:34.328417Z 00O section_start:1773721294:prepare_executor
2026-03-17T04:21:34.328418Z 00O+Preparing the "docker+machine" executor
2026-03-17T04:21:34.458412Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-03-17T04:21:38.530180Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-03-17T04:21:38.530855Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-03-17T04:21:38.530866Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-03-17T04:21:44.948208Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-03-17T04:21:44.948305Z 00O section_end:1773721304:prepare_executor
2026-03-17T04:21:44.948307Z 00O+section_start:1773721304:prepare_script
2026-03-17T04:21:44.948393Z 00O+Preparing environment
2026-03-17T04:21:44.949314Z 00O Using effective pull policy of [always] for container sha256:2f5f945bf62a3cbd9c0e3d8b16cb88d636a97ab29a455971a29d95fe70b57e33
2026-03-17T04:21:50.004474Z 01O Running on runner-u4xqpdyhm-project-3622566-concurrent-0 via runner-u4xqpdyhm-s-l-m-amd64-1773721249-70fd8c0d...
2026-03-17T04:21:50.172776Z 00O section_end:1773721310:prepare_script
2026-03-17T04:21:50.172781Z 00O+section_start:1773721310:get_sources
2026-03-17T04:21:50.173296Z 00O+Getting source from Git repository
2026-03-17T04:21:50.544342Z 01O Gitaly correlation ID: cc726aef133e4dbfa17126b7fa7ac287
2026-03-17T04:21:50.550450Z 01O Fetching changes...
2026-03-17T04:21:50.553722Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-03-17T04:21:50.555885Z 01O Created fresh repository.
2026-03-17T04:21:56.239160Z 01O Checking out 7db13b99 as detached HEAD (ref is master)...
2026-03-17T04:21:56.429041Z 01O 
2026-03-17T04:21:56.429046Z 01O Skipping Git submodules setup
2026-03-17T04:21:56.429048Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-03-17T04:21:56.665948Z 00O section_end:1773721316:get_sources
2026-03-17T04:21:56.665954Z 00O+section_start:1773721316:download_artifacts
2026-03-17T04:21:56.666704Z 00O+Downloading artifacts
2026-03-17T04:21:57.063743Z 01O Downloading artifacts for mirror-packages (13520321980)...
2026-03-17T04:21:59.542207Z 01E Downloading artifacts from coordinator... ok        correlation_id=ccdc1904c3dc4d4291fc7f788ffafce6 host=storage.googleapis.com id=13520321980 responseStatus=200 OK token=6d_C3b4_T
2026-03-17T04:21:59.778015Z 01O Downloading artifacts for build (13520321982)...
2026-03-17T04:22:00.111072Z 01E Downloading artifacts from coordinator... ok        correlation_id=877884731587426bb475a5b67a980d2c host=storage.googleapis.com id=13520321982 responseStatus=200 OK token=6d_C3b4_T
2026-03-17T04:22:00.825604Z 00O section_end:1773721320:download_artifacts
2026-03-17T04:22:00.825610Z 00O+section_start:1773721320:step_script
2026-03-17T04:22:00.825983Z 00O+Executing "step_script" stage of the job script
2026-03-17T04:22:00.826002Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-03-17T04:22:00.826812Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-03-17T04:22:01.178240Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-03-17T04:22:01.187045Z 01O $ mkdir -p ~/.R
2026-03-17T04:22:01.188173Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-03-17T04:22:01.188240Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-03-17T04:22:01.188378Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-03-17T04:22:01.355316Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-03-17T04:22:01.355522Z 01O * using R version 4.5.0 (2025-04-11)
2026-03-17T04:22:01.355849Z 01O * using platform: x86_64-pc-linux-gnu
2026-03-17T04:22:01.356079Z 01O * R was compiled by
2026-03-17T04:22:01.356208Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-03-17T04:22:01.356209Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-03-17T04:22:01.356573Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-03-17T04:22:01.357205Z 01O * using session charset: ASCII
2026-03-17T04:22:02.121078Z 01O * using options '--no-manual --ignore-vignettes'
2026-03-17T04:22:02.121347Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-03-17T04:22:02.123731Z 01O * this is package 'data.table' version '1.18.99'
2026-03-17T04:22:02.124005Z 01O * package encoding: UTF-8
2026-03-17T04:22:02.124262Z 01O * checking package namespace information ... OK
2026-03-17T04:22:02.130937Z 01O * checking package dependencies ... INFO
2026-03-17T04:22:03.014047Z 01O Packages suggested but not available for checking:
2026-03-17T04:22:03.014050Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-03-17T04:22:03.014051Z 01O 
2026-03-17T04:22:03.014051Z 01O Packages which this enhances but not available for checking:
2026-03-17T04:22:03.014052Z 01O   'knitr', 'xfun'
2026-03-17T04:22:03.014122Z 01O * checking if this is a source package ... OK
2026-03-17T04:22:03.016986Z 01O * checking if there is a namespace ... OK
2026-03-17T04:22:03.020533Z 01O * checking for .dll and .exe files ... OK
2026-03-17T04:22:03.021089Z 01O * checking for hidden files and directories ... OK
2026-03-17T04:22:03.023880Z 01O * checking for portable file names ... OK
2026-03-17T04:22:03.027783Z 01O * checking for sufficient/correct file permissions ... OK
2026-03-17T04:22:03.029344Z 01O * checking whether package 'data.table' can be installed ... OK
2026-03-17T04:22:15.870961Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-03-17T04:22:15.871273Z 01O * checking installed package size ... INFO
2026-03-17T04:22:15.875323Z 01O   installed size is  7.6Mb
2026-03-17T04:22:15.876051Z 01O   sub-directories of 1Mb or more:
2026-03-17T04:22:15.876553Z 01O     doc     1.1Mb
2026-03-17T04:22:15.876554Z 01O     libs    1.2Mb
2026-03-17T04:22:15.876555Z 01O     po      1.7Mb
2026-03-17T04:22:15.876555Z 01O     tests   2.2Mb
2026-03-17T04:22:15.876794Z 01O * checking package directory ... OK
2026-03-17T04:22:15.877267Z 01O * checking DESCRIPTION meta-information ... OK
2026-03-17T04:22:16.620586Z 01O * checking top-level files ... OK
2026-03-17T04:22:16.621339Z 01O * checking for left-over files ... OK
2026-03-17T04:22:16.623439Z 01O * checking index information ... OK
2026-03-17T04:22:16.683192Z 01O * checking package subdirectories ... OK
2026-03-17T04:22:16.801359Z 01O * checking code files for non-ASCII characters ... OK
2026-03-17T04:22:16.846992Z 01O * checking R files for syntax errors ... WARNING
2026-03-17T04:22:16.913242Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-03-17T04:22:16.913244Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-03-17T04:22:16.913398Z 01O * checking whether the package can be loaded ... OK
2026-03-17T04:22:17.098034Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-03-17T04:22:17.244387Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-03-17T04:22:17.393099Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-03-17T04:22:17.548247Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-03-17T04:22:17.752111Z 01O * checking loading without being on the library search path ... OK
2026-03-17T04:22:18.134119Z 01O * checking whether startup messages can be suppressed ... OK
2026-03-17T04:22:18.326083Z 01O * checking dependencies in R code ... OK
2026-03-17T04:22:19.014480Z 01O * checking S3 generic/method consistency ... OK
2026-03-17T04:22:19.346616Z 01O * checking replacement functions ... OK
2026-03-17T04:22:19.533536Z 01O * checking foreign function calls ... OK
2026-03-17T04:22:20.271611Z 01O * checking R code for possible problems ... OK
2026-03-17T04:22:30.864107Z 01O * checking Rd files ... OK
2026-03-17T04:22:31.433778Z 01O * checking Rd metadata ... OK
2026-03-17T04:22:31.471858Z 01O * checking Rd cross-references ... INFO
2026-03-17T04:22:34.843658Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-03-17T04:22:34.843781Z 01O * checking for missing documentation entries ... OK
2026-03-17T04:22:35.056660Z 01O * checking for code/documentation mismatches ... OK
2026-03-17T04:22:35.990096Z 01O * checking Rd \usage sections ... OK
2026-03-17T04:22:36.855633Z 01O * checking Rd contents ... OK
2026-03-17T04:22:37.271790Z 01O * checking for unstated dependencies in examples ... OK
2026-03-17T04:22:37.733736Z 01O * checking line endings in shell scripts ... OK
2026-03-17T04:22:37.734280Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-03-17T04:22:37.751290Z 01O * checking line endings in Makefiles ... OK
2026-03-17T04:22:37.751844Z 01O * checking compilation flags in Makevars ... OK
2026-03-17T04:22:37.803930Z 01O * checking for GNU extensions in Makefiles ... OK
2026-03-17T04:22:37.804981Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-03-17T04:22:37.806051Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-03-17T04:22:37.811434Z 01O * checking compiled code ... NOTE
2026-03-17T04:22:37.873074Z 01O File 'data.table/libs/data_table.so':
2026-03-17T04:22:37.873075Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-03-17T04:22:37.873076Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-03-17T04:22:37.873076Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-03-17T04:22:37.873583Z 01O 
2026-03-17T04:22:37.873584Z 01O Compiled code should not call non-API entry points in R.
2026-03-17T04:22:37.873585Z 01O 
2026-03-17T04:22:37.873585Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-03-17T04:22:37.873586Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-03-17T04:22:37.873587Z 01O non-API entry points.
2026-03-17T04:22:37.873907Z 01O * checking installed files from 'inst/doc' ... OK
2026-03-17T04:22:38.021475Z 01O * checking files in 'vignettes' ... SKIPPED
2026-03-17T04:22:38.021917Z 01O * checking examples ... OK
2026-03-17T04:22:41.342700Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-03-17T04:22:41.406356Z 01O * checking tests ...
2026-03-17T04:22:41.542714Z 01E   Running 'S4.R'
2026-03-17T04:22:41.836095Z 01E   Running 'autoprint.R'
2026-03-17T04:22:42.058151Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-03-17T04:22:42.064898Z 01E   Running 'froll.R'
2026-03-17T04:26:38.056143Z 01E   Running 'litedown.R'
2026-03-17T04:26:38.194803Z 01E   Running 'main.R'
2026-03-17T04:27:09.549818Z 01E   Running 'mergelist.R'
2026-03-17T04:27:10.994724Z 01E   Running 'nafill.R'
2026-03-17T04:27:11.372378Z 01E   Running 'optimize.R'
2026-03-17T04:27:12.558423Z 01E   Running 'other.R'
2026-03-17T04:27:12.745081Z 01E   Running 'programming.R'
2026-03-17T04:27:13.299694Z 01E   Running 'types.R'
2026-03-17T04:27:13.525770Z 01O  OK
2026-03-17T04:27:13.526189Z 01O * DONE
2026-03-17T04:27:13.526685Z 01E 
2026-03-17T04:27:13.526828Z 01O Status: 1 WARNING, 1 NOTE
2026-03-17T04:27:13.526996Z 01E See
2026-03-17T04:27:13.526997Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-03-17T04:27:13.526998Z 01E for details.
2026-03-17T04:27:13.527082Z 01E 
2026-03-17T04:27:13.715959Z 00O section_end:1773721633:step_script
2026-03-17T04:27:13.715964Z 00O+section_start:1773721633:after_script
2026-03-17T04:27:13.716353Z 00O+Running after_script
2026-03-17T04:27:14.044204Z 01O Running after script...
2026-03-17T04:27:14.044244Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-03-17T04:27:14.045211Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-03-17T04:27:14.045221Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-03-17T04:27:14.045393Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-03-17T04:27:14.045397Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-03-17T04:27:14.214044Z 00O section_end:1773721634:after_script
2026-03-17T04:27:14.214051Z 00O+section_start:1773721634:upload_artifacts_on_success
2026-03-17T04:27:14.214735Z 00O+Uploading artifacts for successful job
2026-03-17T04:27:14.623525Z 01O Uploading artifacts...
2026-03-17T04:27:14.703138Z 01E bus/test-lin-rel-vanilla: found 694 matching artifact files and directories 
2026-03-17T04:27:16.835822Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=af3dbb1505b143f5a630a152f31b0de0 id=13520321988 responseStatus=201 Created token=6d_C3b4_T
2026-03-17T04:27:17.016495Z 00O section_end:1773721637:upload_artifacts_on_success
2026-03-17T04:27:17.016500Z 00O+section_start:1773721637:cleanup_file_variables
2026-03-17T04:27:17.016590Z 00O+Cleaning up project directory and file based variables
2026-03-17T04:27:17.509907Z 00O section_end:1773721637:cleanup_file_variables
2026-03-17T04:27:17.509912Z 00O+
2026-03-17T04:27:17.526088Z 00O Job succeeded