2026-08-09T04:20:35.583073Z 00O Running with gitlab-runner 19.2.0~pre.1355.g471b878c (471b878c)
2026-08-09T04:20:35.583086Z 00O   on green-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default g2po1APsN, system ID: s_dcb821077a82
2026-08-09T04:20:35.583093Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-08-09T04:20:35.583115Z 00O Resolving secrets
2026-08-09T04:20:35.583243Z 00O section_start:1786249235:prepare_executor

2026-08-09T04:20:35.583247Z 00O+Preparing the "docker+machine" executor
2026-08-09T04:20:35.705995Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-08-09T04:20:38.384996Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-08-09T04:20:38.385446Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-08-09T04:20:38.385456Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-08-09T04:20:41.703236Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-08-09T04:20:41.703319Z 00O section_end:1786249241:prepare_executor

2026-08-09T04:20:41.703414Z 00O+section_start:1786249241:prepare_script

2026-08-09T04:20:41.703418Z 00O+Preparing environment
2026-08-09T04:20:41.704058Z 00O Using effective pull policy of [always] for container sha256:0fc024a42fed2f6cf477e55c0607057e1879c707bc977e4f5daaeadab89e30c6
2026-08-09T04:20:45.878881Z 01O Running on runner-g2po1apsn-project-3622566-concurrent-0 via runner-g2po1apsn-s-l-m-amd64-1786249099-97506a12...
2026-08-09T04:20:45.997281Z 00O section_end:1786249245:prepare_script

2026-08-09T04:20:45.997787Z 00O+section_start:1786249245:get_sources

2026-08-09T04:20:45.997793Z 00O+Getting source from Git repository
2026-08-09T04:20:46.229232Z 01O Gitaly correlation ID: 3317a6a04d3d47f69e0e3a5172a5f46f
2026-08-09T04:20:46.231868Z 01O Fetching changes...
2026-08-09T04:20:46.234515Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-08-09T04:20:46.236199Z 01O Created fresh repository.
2026-08-09T04:20:49.654669Z 01O Checking out 25c9dde6 as detached HEAD (ref is master)...
2026-08-09T04:20:49.757506Z 01O 
2026-08-09T04:20:49.757509Z 01O Skipping Git submodules setup
2026-08-09T04:20:49.757511Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-08-09T04:20:49.923600Z 00O section_end:1786249249:get_sources

2026-08-09T04:20:49.924302Z 00O+section_start:1786249249:download_artifacts

2026-08-09T04:20:49.924308Z 00O+Downloading artifacts
2026-08-09T04:20:50.163546Z 01O Downloading artifacts for build (15793618862)...
2026-08-09T04:20:50.378552Z 01E Direct download from storage.googleapis.com         correlation_id=b5fad9e8f3564160bc1e1fd0701f0976 id=15793618862 status=302 token=72_Yc_eCa
2026-08-09T04:20:50.572574Z 01E Downloading artifacts from coordinator... ok        correlation_id=b5fad9e8f3564160bc1e1fd0701f0976 id=15793618862 status=302 token=72_Yc_eCa
2026-08-09T04:20:50.580402Z 01O Downloading artifacts for mirror-packages (15793618861)...
2026-08-09T04:20:50.789841Z 01E Direct download from storage.googleapis.com         correlation_id=1fdb8d342fec4acdb7095f6d8b89f3bd id=15793618861 status=302 token=72_Yc_eCa
2026-08-09T04:20:51.318272Z 01E Downloading artifacts from coordinator... ok        correlation_id=1fdb8d342fec4acdb7095f6d8b89f3bd id=15793618861 status=302 token=72_Yc_eCa
2026-08-09T04:20:52.431253Z 00O section_end:1786249252:download_artifacts

2026-08-09T04:20:52.431648Z 00O+section_start:1786249252:step_script

2026-08-09T04:20:52.431655Z 00O+Executing "step_script" stage of the job script
2026-08-09T04:20:52.431668Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-08-09T04:20:52.432408Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-08-09T04:20:52.676176Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-08-09T04:20:52.680848Z 01O $ mkdir -p ~/.R
2026-08-09T04:20:52.681508Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-08-09T04:20:52.681511Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-08-09T04:20:52.681584Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-08-09T04:20:52.785824Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-08-09T04:20:52.785829Z 01O * using R version 4.5.0 (2025-04-11)
2026-08-09T04:20:52.785885Z 01O * using platform: x86_64-pc-linux-gnu
2026-08-09T04:20:52.786036Z 01O * R was compiled by
2026-08-09T04:20:52.786037Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-08-09T04:20:52.786037Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-08-09T04:20:52.786174Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-08-09T04:20:52.786554Z 01O * using session charset: ASCII
2026-08-09T04:20:53.257755Z 01O * using options '--no-manual --ignore-vignettes'
2026-08-09T04:20:53.257804Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-08-09T04:20:53.259448Z 01O * this is package 'data.table' version '1.18.99'
2026-08-09T04:20:53.259555Z 01O * package encoding: UTF-8
2026-08-09T04:20:53.259640Z 01O * checking package namespace information ... OK
2026-08-09T04:20:53.264111Z 01O * checking package dependencies ... INFO
2026-08-09T04:20:54.065238Z 01O Packages suggested but not available for checking:
2026-08-09T04:20:54.065240Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-08-09T04:20:54.065241Z 01O 
2026-08-09T04:20:54.065242Z 01O Packages which this enhances but not available for checking:
2026-08-09T04:20:54.065242Z 01O   'knitr', 'xfun'
2026-08-09T04:20:54.065243Z 01O * checking if this is a source package ... OK
2026-08-09T04:20:54.066609Z 01O * checking if there is a namespace ... OK
2026-08-09T04:20:54.068538Z 01O * checking for .dll and .exe files ... OK
2026-08-09T04:20:54.068702Z 01O * checking for hidden files and directories ... OK
2026-08-09T04:20:54.069624Z 01O * checking for portable file names ... OK
2026-08-09T04:20:54.071650Z 01O * checking for sufficient/correct file permissions ... OK
2026-08-09T04:20:54.072420Z 01O * checking whether package 'data.table' can be installed ... OK
2026-08-09T04:21:01.726838Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-08-09T04:21:01.726848Z 01O * checking installed package size ... INFO
2026-08-09T04:21:01.729588Z 01O   installed size is  7.6Mb
2026-08-09T04:21:01.730039Z 01O   sub-directories of 1Mb or more:
2026-08-09T04:21:01.730421Z 01O     doc     1.1Mb
2026-08-09T04:21:01.730421Z 01O     libs    1.2Mb
2026-08-09T04:21:01.730422Z 01O     po      1.7Mb
2026-08-09T04:21:01.730422Z 01O     tests   2.2Mb
2026-08-09T04:21:01.730423Z 01O * checking package directory ... OK
2026-08-09T04:21:01.730638Z 01O * checking DESCRIPTION meta-information ... OK
2026-08-09T04:21:02.150332Z 01O * checking top-level files ... OK
2026-08-09T04:21:02.150640Z 01O * checking for left-over files ... OK
2026-08-09T04:21:02.151739Z 01O * checking index information ... OK
2026-08-09T04:21:02.184552Z 01O * checking package subdirectories ... OK
2026-08-09T04:21:02.249600Z 01O * checking code files for non-ASCII characters ... OK
2026-08-09T04:21:02.275403Z 01O * checking R files for syntax errors ... WARNING
2026-08-09T04:21:02.312536Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-08-09T04:21:02.312538Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-08-09T04:21:02.312542Z 01O * checking whether the package can be loaded ... OK
2026-08-09T04:21:02.424874Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-08-09T04:21:02.515832Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-08-09T04:21:02.606316Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-08-09T04:21:02.697635Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-08-09T04:21:02.812747Z 01O * checking loading without being on the library search path ... OK
2026-08-09T04:21:03.041495Z 01O * checking whether startup messages can be suppressed ... OK
2026-08-09T04:21:03.153002Z 01O * checking dependencies in R code ... OK
2026-08-09T04:21:03.563734Z 01O * checking S3 generic/method consistency ... OK
2026-08-09T04:21:03.776846Z 01O * checking replacement functions ... OK
2026-08-09T04:21:03.920837Z 01O * checking foreign function calls ... OK
2026-08-09T04:21:04.421029Z 01O * checking R code for possible problems ... OK
2026-08-09T04:21:10.274791Z 01O * checking Rd files ... OK
2026-08-09T04:21:10.592107Z 01O * checking Rd metadata ... OK
2026-08-09T04:21:10.613838Z 01O * checking Rd cross-references ... INFO
2026-08-09T04:21:13.731218Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-08-09T04:21:13.731227Z 01O * checking for missing documentation entries ... OK
2026-08-09T04:21:13.862674Z 01O * checking for code/documentation mismatches ... OK
2026-08-09T04:21:14.441915Z 01O * checking Rd \usage sections ... OK
2026-08-09T04:21:14.979210Z 01O * checking Rd contents ... OK
2026-08-09T04:21:15.240826Z 01O * checking for unstated dependencies in examples ... OK
2026-08-09T04:21:15.501020Z 01O * checking line endings in shell scripts ... OK
2026-08-09T04:21:15.501274Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-08-09T04:21:15.510507Z 01O * checking line endings in Makefiles ... OK
2026-08-09T04:21:15.510512Z 01O * checking compilation flags in Makevars ... OK
2026-08-09T04:21:15.539617Z 01O * checking for GNU extensions in Makefiles ... OK
2026-08-09T04:21:15.539960Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-08-09T04:21:15.540521Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-08-09T04:21:15.542814Z 01O * checking compiled code ... NOTE
2026-08-09T04:21:15.580797Z 01O File 'data.table/libs/data.table.so':
2026-08-09T04:21:15.580798Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-08-09T04:21:15.580799Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-08-09T04:21:15.580800Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-08-09T04:21:15.581214Z 01O 
2026-08-09T04:21:15.581215Z 01O Compiled code should not call non-API entry points in R.
2026-08-09T04:21:15.581215Z 01O 
2026-08-09T04:21:15.581216Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-08-09T04:21:15.581216Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-08-09T04:21:15.581217Z 01O non-API entry points.
2026-08-09T04:21:15.581441Z 01O * checking installed files from 'inst/doc' ... OK
2026-08-09T04:21:15.672498Z 01O * checking files in 'vignettes' ... SKIPPED
2026-08-09T04:21:15.672594Z 01O * checking examples ... OK
2026-08-09T04:21:18.212370Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-08-09T04:21:18.247931Z 01O * checking tests ...
2026-08-09T04:21:18.331641Z 01E   Running 'S4.R'
2026-08-09T04:21:18.510654Z 01E   Running 'autoprint.R'
2026-08-09T04:21:18.643502Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-08-09T04:21:18.647055Z 01E   Running 'froll.R'
2026-08-09T04:23:35.114688Z 01E   Running 'litedown.R'
2026-08-09T04:23:35.194545Z 01E   Running 'main.R'
2026-08-09T04:23:55.410908Z 01E   Running 'mergelist.R'
2026-08-09T04:23:56.140424Z 01E   Running 'nafill.R'
2026-08-09T04:23:56.345856Z 01E   Running 'optimize.R'
2026-08-09T04:23:56.956773Z 01E   Running 'other.R'
2026-08-09T04:23:57.071732Z 01E   Running 'programming.R'
2026-08-09T04:23:57.382120Z 01E   Running 'self.R'
2026-08-09T04:23:57.500930Z 01E   Running 'types.R'
2026-08-09T04:23:57.628370Z 01O  OK
2026-08-09T04:23:57.628654Z 01O * DONE
2026-08-09T04:23:57.628893Z 01E 
2026-08-09T04:23:57.628946Z 01O Status: 1 WARNING, 1 NOTE
2026-08-09T04:23:57.629066Z 01E See
2026-08-09T04:23:57.629067Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-08-09T04:23:57.629068Z 01E for details.
2026-08-09T04:23:57.629103Z 01E 
2026-08-09T04:23:57.775547Z 00O section_end:1786249437:step_script

2026-08-09T04:23:57.775923Z 00O+section_start:1786249437:after_script

2026-08-09T04:23:57.775928Z 00O+Running after_script
2026-08-09T04:23:58.018328Z 01O Running after script...
2026-08-09T04:23:58.018352Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-08-09T04:23:58.018757Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-08-09T04:23:58.018758Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-08-09T04:23:58.018758Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-08-09T04:23:58.018762Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-08-09T04:23:58.145438Z 00O section_end:1786249438:after_script

2026-08-09T04:23:58.146143Z 00O+section_start:1786249438:upload_artifacts_on_success

2026-08-09T04:23:58.146149Z 00O+Uploading artifacts for successful job
2026-08-09T04:23:58.404107Z 01O Uploading artifacts...
2026-08-09T04:23:58.437428Z 01E bus/test-lin-rel-vanilla: found 701 matching artifact files and directories 
2026-08-09T04:24:00.162782Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=31116e4a45c146c99bc6f546cfd794e2 id=15793618864 status=201 token=72_Yc_eCa
2026-08-09T04:24:00.287794Z 00O section_end:1786249440:upload_artifacts_on_success

2026-08-09T04:24:00.287901Z 00O+section_start:1786249440:cleanup_file_variables

2026-08-09T04:24:00.287905Z 00O+Cleaning up project directory and file based variables
2026-08-09T04:24:00.656756Z 00O section_end:1786249440:cleanup_file_variables

2026-08-09T04:24:00.664194Z 00O Job succeeded