2026-07-31T04:21:48.722970Z 00O Running with gitlab-runner 19.2.0~pre.1355.g471b878c (471b878c)
2026-07-31T04:21:48.722981Z 00O   on green-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default XC_pLo7y6, system ID: s_e492edf4e5ae
2026-07-31T04:21:48.722987Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true
2026-07-31T04:21:48.723005Z 00O Resolving secrets
2026-07-31T04:21:48.723143Z 00O section_start:1785471708:prepare_executor

2026-07-31T04:21:48.723146Z 00O+Preparing the "docker+machine" executor
2026-07-31T04:21:48.856665Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-07-31T04:21:52.617644Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-07-31T04:21:52.618034Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-07-31T04:21:52.618044Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-07-31T04:21:58.249507Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-07-31T04:21:58.249585Z 00O section_end:1785471718:prepare_executor

2026-07-31T04:21:58.249668Z 00O+section_start:1785471718:prepare_script

2026-07-31T04:21:58.249674Z 00O+Preparing environment
2026-07-31T04:21:58.250275Z 00O Using effective pull policy of [always] for container sha256:71e69ccecc002de6119a4338168dfcdd4b971a6ca77c23578b840d641139d970
2026-07-31T04:22:02.147400Z 01O Running on runner-xcplo7y6-project-3622566-concurrent-0 via runner-xcplo7y6-s-l-m-amd64-1785471263-0d863301...
2026-07-31T04:22:02.305071Z 00O section_end:1785471722:prepare_script

2026-07-31T04:22:02.305586Z 00O+section_start:1785471722:get_sources

2026-07-31T04:22:02.305591Z 00O+Getting source from Git repository
2026-07-31T04:22:02.644399Z 01O Gitaly correlation ID: 6c30c7cd25ea44e99c091c3defea90ee
2026-07-31T04:22:02.650576Z 01O Fetching changes...
2026-07-31T04:22:02.653627Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-07-31T04:22:02.655715Z 01O Created fresh repository.
2026-07-31T04:22:08.576097Z 01O Checking out 7bc8bc13 as detached HEAD (ref is master)...
2026-07-31T04:22:08.760369Z 01O 
2026-07-31T04:22:08.760373Z 01O Skipping Git submodules setup
2026-07-31T04:22:08.760375Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-07-31T04:22:08.972129Z 00O section_end:1785471728:get_sources

2026-07-31T04:22:08.973570Z 00O+section_start:1785471728:download_artifacts

2026-07-31T04:22:08.973585Z 00O+Downloading artifacts
2026-07-31T04:22:09.346639Z 01O Downloading artifacts for build (15637875529)...
2026-07-31T04:22:09.825737Z 01E Direct download from storage.googleapis.com         correlation_id=f1aa261a3484454cb7816d10e72a85c4 id=15637875529 status=302 token=71_xoNQ2q
2026-07-31T04:22:10.126721Z 01E Downloading artifacts from coordinator... ok        correlation_id=f1aa261a3484454cb7816d10e72a85c4 id=15637875529 status=302 token=71_xoNQ2q
2026-07-31T04:22:10.145722Z 01O Downloading artifacts for mirror-packages (15637875528)...
2026-07-31T04:22:10.365758Z 01E Direct download from storage.googleapis.com         correlation_id=b9a8a03f058241e98fb1a5fb377e3e6a id=15637875528 status=302 token=71_xoNQ2q
2026-07-31T04:22:11.110764Z 01E Downloading artifacts from coordinator... ok        correlation_id=b9a8a03f058241e98fb1a5fb377e3e6a id=15637875528 status=302 token=71_xoNQ2q
2026-07-31T04:22:12.279546Z 00O section_end:1785471732:download_artifacts

2026-07-31T04:22:12.279943Z 00O+section_start:1785471732:step_script

2026-07-31T04:22:12.279951Z 00O+Executing "step_script" stage of the job script
2026-07-31T04:22:12.279964Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-07-31T04:22:12.280679Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-07-31T04:22:12.607006Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-07-31T04:22:12.616151Z 01O $ mkdir -p ~/.R
2026-07-31T04:22:12.617348Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-07-31T04:22:12.617485Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-07-31T04:22:12.617532Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-07-31T04:22:12.784403Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-07-31T04:22:12.784528Z 01O * using R version 4.5.0 (2025-04-11)
2026-07-31T04:22:12.784788Z 01O * using platform: x86_64-pc-linux-gnu
2026-07-31T04:22:12.785007Z 01O * R was compiled by
2026-07-31T04:22:12.785144Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-07-31T04:22:12.785145Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-07-31T04:22:12.785364Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-07-31T04:22:12.786037Z 01O * using session charset: ASCII
2026-07-31T04:22:13.517369Z 01O * using options '--no-manual --ignore-vignettes'
2026-07-31T04:22:13.517608Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-07-31T04:22:13.520047Z 01O * this is package 'data.table' version '1.18.99'
2026-07-31T04:22:13.520290Z 01O * package encoding: UTF-8
2026-07-31T04:22:13.520522Z 01O * checking package namespace information ... OK
2026-07-31T04:22:13.527066Z 01O * checking package dependencies ... INFO
2026-07-31T04:22:14.500329Z 01O Packages suggested but not available for checking:
2026-07-31T04:22:14.500332Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-07-31T04:22:14.500333Z 01O 
2026-07-31T04:22:14.500333Z 01O Packages which this enhances but not available for checking:
2026-07-31T04:22:14.500334Z 01O   'knitr', 'xfun'
2026-07-31T04:22:14.500487Z 01O * checking if this is a source package ... OK
2026-07-31T04:22:14.503400Z 01O * checking if there is a namespace ... OK
2026-07-31T04:22:14.507379Z 01O * checking for .dll and .exe files ... OK
2026-07-31T04:22:14.507997Z 01O * checking for hidden files and directories ... OK
2026-07-31T04:22:14.510917Z 01O * checking for portable file names ... OK
2026-07-31T04:22:14.514908Z 01O * checking for sufficient/correct file permissions ... OK
2026-07-31T04:22:14.516499Z 01O * checking whether package 'data.table' can be installed ... OK
2026-07-31T04:22:27.362521Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-07-31T04:22:27.362896Z 01O * checking installed package size ... INFO
2026-07-31T04:22:27.366824Z 01O   installed size is  7.6Mb
2026-07-31T04:22:27.367396Z 01O   sub-directories of 1Mb or more:
2026-07-31T04:22:27.367888Z 01O     doc     1.1Mb
2026-07-31T04:22:27.367888Z 01O     libs    1.2Mb
2026-07-31T04:22:27.367889Z 01O     po      1.7Mb
2026-07-31T04:22:27.367889Z 01O     tests   2.2Mb
2026-07-31T04:22:27.368152Z 01O * checking package directory ... OK
2026-07-31T04:22:27.368569Z 01O * checking DESCRIPTION meta-information ... OK
2026-07-31T04:22:28.079614Z 01O * checking top-level files ... OK
2026-07-31T04:22:28.080365Z 01O * checking for left-over files ... OK
2026-07-31T04:22:28.082417Z 01O * checking index information ... OK
2026-07-31T04:22:28.141197Z 01O * checking package subdirectories ... OK
2026-07-31T04:22:28.254046Z 01O * checking code files for non-ASCII characters ... OK
2026-07-31T04:22:28.298308Z 01O * checking R files for syntax errors ... WARNING
2026-07-31T04:22:28.363602Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-07-31T04:22:28.363604Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-07-31T04:22:28.363703Z 01O * checking whether the package can be loaded ... OK
2026-07-31T04:22:28.545545Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-07-31T04:22:28.689897Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-07-31T04:22:28.832931Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-07-31T04:22:28.987111Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-07-31T04:22:29.177048Z 01O * checking loading without being on the library search path ... OK
2026-07-31T04:22:29.544859Z 01O * checking whether startup messages can be suppressed ... OK
2026-07-31T04:22:29.731694Z 01O * checking dependencies in R code ... OK
2026-07-31T04:22:30.386051Z 01O * checking S3 generic/method consistency ... OK
2026-07-31T04:22:30.711073Z 01O * checking replacement functions ... OK
2026-07-31T04:22:30.898569Z 01O * checking foreign function calls ... OK
2026-07-31T04:22:31.652032Z 01O * checking R code for possible problems ... OK
2026-07-31T04:22:42.014570Z 01O * checking Rd files ... OK
2026-07-31T04:22:42.576346Z 01O * checking Rd metadata ... OK
2026-07-31T04:22:42.614811Z 01O * checking Rd cross-references ... INFO
2026-07-31T04:22:46.114600Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-07-31T04:22:46.114791Z 01O * checking for missing documentation entries ... OK
2026-07-31T04:22:46.323003Z 01O * checking for code/documentation mismatches ... OK
2026-07-31T04:22:47.249995Z 01O * checking Rd \usage sections ... OK
2026-07-31T04:22:48.072761Z 01O * checking Rd contents ... OK
2026-07-31T04:22:48.510528Z 01O * checking for unstated dependencies in examples ... OK
2026-07-31T04:22:48.971583Z 01O * checking line endings in shell scripts ... OK
2026-07-31T04:22:48.972075Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-07-31T04:22:48.989065Z 01O * checking line endings in Makefiles ... OK
2026-07-31T04:22:48.989508Z 01O * checking compilation flags in Makevars ... OK
2026-07-31T04:22:49.038095Z 01O * checking for GNU extensions in Makefiles ... OK
2026-07-31T04:22:49.038786Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-07-31T04:22:49.039770Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-07-31T04:22:49.045153Z 01O * checking compiled code ... NOTE
2026-07-31T04:22:49.106805Z 01O File 'data.table/libs/data.table.so':
2026-07-31T04:22:49.106805Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-07-31T04:22:49.106806Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-07-31T04:22:49.106807Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-07-31T04:22:49.107316Z 01O 
2026-07-31T04:22:49.107317Z 01O Compiled code should not call non-API entry points in R.
2026-07-31T04:22:49.107317Z 01O 
2026-07-31T04:22:49.107318Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-07-31T04:22:49.107318Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-07-31T04:22:49.107319Z 01O non-API entry points.
2026-07-31T04:22:49.107680Z 01O * checking installed files from 'inst/doc' ... OK
2026-07-31T04:22:49.254781Z 01O * checking files in 'vignettes' ... SKIPPED
2026-07-31T04:22:49.255155Z 01O * checking examples ... OK
2026-07-31T04:22:52.561179Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-07-31T04:22:52.623937Z 01O * checking tests ...
2026-07-31T04:22:52.757450Z 01E   Running 'S4.R'
2026-07-31T04:22:53.043214Z 01E   Running 'autoprint.R'
2026-07-31T04:22:53.263234Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-07-31T04:22:53.268898Z 01E   Running 'froll.R'
2026-07-31T04:26:45.324268Z 01E   Running 'litedown.R'
2026-07-31T04:26:45.465241Z 01E   Running 'main.R'
2026-07-31T04:27:16.295971Z 01E   Running 'mergelist.R'
2026-07-31T04:27:17.733688Z 01E   Running 'nafill.R'
2026-07-31T04:27:18.117625Z 01E   Running 'optimize.R'
2026-07-31T04:27:19.268975Z 01E   Running 'other.R'
2026-07-31T04:27:19.462091Z 01E   Running 'programming.R'
2026-07-31T04:27:20.024617Z 01E   Running 'types.R'
2026-07-31T04:27:20.254276Z 01O  OK
2026-07-31T04:27:20.254674Z 01O * DONE
2026-07-31T04:27:20.255058Z 01E 
2026-07-31T04:27:20.255184Z 01O Status: 1 WARNING, 1 NOTE
2026-07-31T04:27:20.255331Z 01E See
2026-07-31T04:27:20.255332Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-07-31T04:27:20.255332Z 01E for details.
2026-07-31T04:27:20.255427Z 01E 
2026-07-31T04:27:20.426177Z 00O section_end:1785472040:step_script

2026-07-31T04:27:20.426609Z 00O+section_start:1785472040:after_script

2026-07-31T04:27:20.426615Z 00O+Running after_script
2026-07-31T04:27:20.744885Z 01O Running after script...
2026-07-31T04:27:20.744913Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-07-31T04:27:20.745816Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-07-31T04:27:20.745855Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-07-31T04:27:20.745993Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-07-31T04:27:20.746029Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-07-31T04:27:20.902617Z 00O section_end:1785472040:after_script

2026-07-31T04:27:20.903350Z 00O+section_start:1785472040:upload_artifacts_on_success

2026-07-31T04:27:20.903357Z 00O+Uploading artifacts for successful job
2026-07-31T04:27:21.269131Z 01O Uploading artifacts...
2026-07-31T04:27:21.325692Z 01E bus/test-lin-rel-vanilla: found 696 matching artifact files and directories 
2026-07-31T04:27:23.310520Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=7a579e75ae7a4dbcb62693c3531ce2fe id=15637875531 status=201 token=71_xoNQ2q
2026-07-31T04:27:23.476766Z 00O section_end:1785472043:upload_artifacts_on_success

2026-07-31T04:27:23.476868Z 00O+section_start:1785472043:cleanup_file_variables

2026-07-31T04:27:23.476872Z 00O+Cleaning up project directory and file based variables
2026-07-31T04:27:23.974545Z 00O section_end:1785472043:cleanup_file_variables

2026-07-31T04:27:23.983144Z 00O Job succeeded