2026-01-30T04:22:17.391234Z 00O Running with gitlab-runner 18.7.0~pre.433.g3a5f2314 (3a5f2314)
2026-01-30T04:22:17.391244Z 00O   on blue-2.saas-linux-medium-amd64.runners-manager.gitlab.com/default ZQ74L_riD, system ID: s_805fb2e5035f
2026-01-30T04:22:17.391264Z 00O Resolving secrets
2026-01-30T04:22:17.391372Z 00O section_start:1769746937:prepare_executor
2026-01-30T04:22:17.391373Z 00O+Preparing the "docker+machine" executor
2026-01-30T04:22:17.516284Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-01-30T04:22:21.793958Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-01-30T04:22:21.794397Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-01-30T04:22:21.794403Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-01-30T04:22:27.565015Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-01-30T04:22:27.565092Z 00O section_end:1769746947:prepare_executor
2026-01-30T04:22:27.565094Z 00O+section_start:1769746947:prepare_script
2026-01-30T04:22:27.565173Z 00O+Preparing environment
2026-01-30T04:22:27.565949Z 00O Using effective pull policy of [always] for container sha256:3676992f0c7e59cc158aaaedd22449d48bee94599e2e155142ac30906ca8ab9e
2026-01-30T04:22:32.646543Z 01O Running on runner-zq74lrid-project-3622566-concurrent-0 via runner-zq74lrid-s-l-m-amd64-1769746695-f70e684a...
2026-01-30T04:22:32.830719Z 00O section_end:1769746952:prepare_script
2026-01-30T04:22:32.830725Z 00O+section_start:1769746952:get_sources
2026-01-30T04:22:32.831240Z 00O+Getting source from Git repository
2026-01-30T04:22:33.223364Z 01O Gitaly correlation ID: 9e88e2a7f8c34daeb3a384198d672356
2026-01-30T04:22:33.229455Z 01O Fetching changes...
2026-01-30T04:22:33.233665Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-01-30T04:22:33.236657Z 01O Created fresh repository.
2026-01-30T04:22:38.889279Z 01O Checking out 1bd88cbc as detached HEAD (ref is master)...
2026-01-30T04:22:39.089421Z 01O 
2026-01-30T04:22:39.089424Z 01O Skipping Git submodules setup
2026-01-30T04:22:39.089425Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-01-30T04:22:39.344862Z 00O section_end:1769746959:get_sources
2026-01-30T04:22:39.344867Z 00O+section_start:1769746959:download_artifacts
2026-01-30T04:22:39.345540Z 00O+Downloading artifacts
2026-01-30T04:22:39.787859Z 01O Downloading artifacts for build (12923844881)...
2026-01-30T04:22:40.183104Z 01E Downloading artifacts from coordinator... ok        correlation_id=97b8dd10045e4fcfa4aaad8ec2f3345f host=storage.googleapis.com id=12923844881 responseStatus=200 OK token=6c_9SUxqG
2026-01-30T04:22:40.201993Z 01O Downloading artifacts for mirror-packages (12923844875)...
2026-01-30T04:22:41.374858Z 01E Downloading artifacts from coordinator... ok        correlation_id=fab2e77eaec24ce58e8a338f135a123f host=storage.googleapis.com id=12923844875 responseStatus=200 OK token=6c_9SUxqG
2026-01-30T04:22:42.305419Z 00O section_end:1769746962:download_artifacts
2026-01-30T04:22:42.305427Z 00O+section_start:1769746962:step_script
2026-01-30T04:22:42.305909Z 00O+Executing "step_script" stage of the job script
2026-01-30T04:22:42.305930Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-01-30T04:22:42.306931Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-01-30T04:22:42.678855Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-01-30T04:22:42.688225Z 01O $ mkdir -p ~/.R
2026-01-30T04:22:42.689615Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-01-30T04:22:42.689824Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-01-30T04:22:42.689826Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-01-30T04:22:42.875402Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-01-30T04:22:42.875581Z 01O * using R version 4.5.0 (2025-04-11)
2026-01-30T04:22:42.875774Z 01O * using platform: x86_64-pc-linux-gnu
2026-01-30T04:22:42.875999Z 01O * R was compiled by
2026-01-30T04:22:42.876162Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-01-30T04:22:42.876163Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-01-30T04:22:42.876380Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-01-30T04:22:42.877036Z 01O * using session charset: ASCII
2026-01-30T04:22:43.703239Z 01O * using options '--no-manual --ignore-vignettes'
2026-01-30T04:22:43.703860Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-01-30T04:22:43.706647Z 01O * this is package 'data.table' version '1.18.99'
2026-01-30T04:22:43.706812Z 01O * package encoding: UTF-8
2026-01-30T04:22:43.707104Z 01O * checking package namespace information ... OK
2026-01-30T04:22:43.714513Z 01O * checking package dependencies ... INFO
2026-01-30T04:22:44.671664Z 01O Packages suggested but not available for checking:
2026-01-30T04:22:44.671668Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-01-30T04:22:44.671669Z 01O 
2026-01-30T04:22:44.671670Z 01O Packages which this enhances but not available for checking:
2026-01-30T04:22:44.671670Z 01O   'knitr', 'xfun'
2026-01-30T04:22:44.671775Z 01O * checking if this is a source package ... OK
2026-01-30T04:22:44.674758Z 01O * checking if there is a namespace ... OK
2026-01-30T04:22:44.679649Z 01O * checking for .dll and .exe files ... OK
2026-01-30T04:22:44.680302Z 01O * checking for hidden files and directories ... OK
2026-01-30T04:22:44.683360Z 01O * checking for portable file names ... OK
2026-01-30T04:22:44.687601Z 01O * checking for sufficient/correct file permissions ... OK
2026-01-30T04:22:44.689262Z 01O * checking whether package 'data.table' can be installed ... OK
2026-01-30T04:22:57.632949Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-01-30T04:22:57.633379Z 01O * checking installed package size ... INFO
2026-01-30T04:22:57.637810Z 01O   installed size is  7.5Mb
2026-01-30T04:22:57.638444Z 01O   sub-directories of 1Mb or more:
2026-01-30T04:22:57.638993Z 01O     doc     1.1Mb
2026-01-30T04:22:57.638994Z 01O     libs    1.2Mb
2026-01-30T04:22:57.638994Z 01O     po      1.7Mb
2026-01-30T04:22:57.638995Z 01O     tests   2.2Mb
2026-01-30T04:22:57.639185Z 01O * checking package directory ... OK
2026-01-30T04:22:57.639701Z 01O * checking DESCRIPTION meta-information ... OK
2026-01-30T04:22:58.453536Z 01O * checking top-level files ... OK
2026-01-30T04:22:58.454341Z 01O * checking for left-over files ... OK
2026-01-30T04:22:58.456527Z 01O * checking index information ... OK
2026-01-30T04:22:58.523186Z 01O * checking package subdirectories ... OK
2026-01-30T04:22:58.656263Z 01O * checking code files for non-ASCII characters ... OK
2026-01-30T04:22:58.707502Z 01O * checking R files for syntax errors ... WARNING
2026-01-30T04:22:58.780007Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-01-30T04:22:58.780008Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-01-30T04:22:58.780119Z 01O * checking whether the package can be loaded ... OK
2026-01-30T04:22:58.994366Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-01-30T04:22:59.158149Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-01-30T04:22:59.324995Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-01-30T04:22:59.492489Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-01-30T04:22:59.706555Z 01O * checking loading without being on the library search path ... OK
2026-01-30T04:23:00.147193Z 01O * checking whether startup messages can be suppressed ... OK
2026-01-30T04:23:00.359196Z 01O * checking dependencies in R code ... OK
2026-01-30T04:23:01.121181Z 01O * checking S3 generic/method consistency ... OK
2026-01-30T04:23:01.504534Z 01O * checking replacement functions ... OK
2026-01-30T04:23:01.743832Z 01O * checking foreign function calls ... OK
2026-01-30T04:23:02.563377Z 01O * checking R code for possible problems ... OK
2026-01-30T04:23:13.636707Z 01O * checking Rd files ... OK
2026-01-30T04:23:14.227259Z 01O * checking Rd metadata ... OK
2026-01-30T04:23:14.270092Z 01O * checking Rd cross-references ... INFO
2026-01-30T04:23:18.302552Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-01-30T04:23:18.302747Z 01O * checking for missing documentation entries ... OK
2026-01-30T04:23:18.534081Z 01O * checking for code/documentation mismatches ... OK
2026-01-30T04:23:19.546445Z 01O * checking Rd \usage sections ... OK
2026-01-30T04:23:20.430156Z 01O * checking Rd contents ... OK
2026-01-30T04:23:20.889863Z 01O * checking for unstated dependencies in examples ... OK
2026-01-30T04:23:21.390684Z 01O * checking line endings in shell scripts ... OK
2026-01-30T04:23:21.391394Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-01-30T04:23:21.413251Z 01O * checking line endings in Makefiles ... OK
2026-01-30T04:23:21.413750Z 01O * checking compilation flags in Makevars ... OK
2026-01-30T04:23:21.467969Z 01O * checking for GNU extensions in Makefiles ... OK
2026-01-30T04:23:21.468787Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-01-30T04:23:21.469822Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-01-30T04:23:21.475180Z 01O * checking compiled code ... NOTE
2026-01-30T04:23:21.543485Z 01O File 'data.table/libs/data_table.so':
2026-01-30T04:23:21.543486Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'SETLENGTH',
2026-01-30T04:23:21.543487Z 01O     'SET_GROWABLE_BIT', 'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-01-30T04:23:21.544025Z 01O 
2026-01-30T04:23:21.544026Z 01O Compiled code should not call non-API entry points in R.
2026-01-30T04:23:21.544027Z 01O 
2026-01-30T04:23:21.544027Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-01-30T04:23:21.544028Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-01-30T04:23:21.544029Z 01O non-API entry points.
2026-01-30T04:23:21.544385Z 01O * checking installed files from 'inst/doc' ... OK
2026-01-30T04:23:21.705089Z 01O * checking files in 'vignettes' ... SKIPPED
2026-01-30T04:23:21.705517Z 01O * checking examples ... OK
2026-01-30T04:23:25.192166Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-01-30T04:23:25.257682Z 01O * checking tests ...
2026-01-30T04:23:25.404155Z 01E   Running 'S4.R'
2026-01-30T04:23:25.710838Z 01E   Running 'autoprint.R'
2026-01-30T04:23:25.948625Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-01-30T04:23:25.954977Z 01E   Running 'froll.R'
2026-01-30T04:27:32.010055Z 01E   Running 'litedown.R'
2026-01-30T04:27:32.154368Z 01E   Running 'main.R'
2026-01-30T04:28:03.768222Z 01E   Running 'mergelist.R'
2026-01-30T04:28:05.235496Z 01E   Running 'nafill.R'
2026-01-30T04:28:05.628622Z 01E   Running 'optimize.R'
2026-01-30T04:28:06.823890Z 01E   Running 'other.R'
2026-01-30T04:28:07.018576Z 01E   Running 'programming.R'
2026-01-30T04:28:07.604261Z 01E   Running 'types.R'
2026-01-30T04:28:07.848255Z 01O  OK
2026-01-30T04:28:07.848650Z 01O * DONE
2026-01-30T04:28:07.849038Z 01E 
2026-01-30T04:28:07.849160Z 01O Status: 1 WARNING, 1 NOTE
2026-01-30T04:28:07.849313Z 01E See
2026-01-30T04:28:07.849314Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-01-30T04:28:07.849315Z 01E for details.
2026-01-30T04:28:07.849415Z 01E 
2026-01-30T04:28:08.020557Z 00O section_end:1769747288:step_script
2026-01-30T04:28:08.020561Z 00O+section_start:1769747288:after_script
2026-01-30T04:28:08.020958Z 00O+Running after_script
2026-01-30T04:28:08.356319Z 01O Running after script...
2026-01-30T04:28:08.356343Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-01-30T04:28:08.357209Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-01-30T04:28:08.357256Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-01-30T04:28:08.357334Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-01-30T04:28:08.357461Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-01-30T04:28:08.514723Z 00O section_end:1769747288:after_script
2026-01-30T04:28:08.514726Z 00O+section_start:1769747288:upload_artifacts_on_success
2026-01-30T04:28:08.515447Z 00O+Uploading artifacts for successful job
2026-01-30T04:28:08.893441Z 01O Uploading artifacts...
2026-01-30T04:28:08.957161Z 01E bus/test-lin-rel-vanilla: found 693 matching artifact files and directories 
2026-01-30T04:28:11.029103Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=06d341cd62d44d4099cacd6d19c2feb5 id=12923844905 responseStatus=201 Created token=6c_9SUxqG
2026-01-30T04:28:11.207969Z 00O section_end:1769747291:upload_artifacts_on_success
2026-01-30T04:28:11.207975Z 00O+section_start:1769747291:cleanup_file_variables
2026-01-30T04:28:11.208060Z 00O+Cleaning up project directory and file based variables
2026-01-30T04:28:11.693737Z 00O section_end:1769747291:cleanup_file_variables
2026-01-30T04:28:11.693743Z 00O+
2026-01-30T04:28:11.705379Z 00O Job succeeded