2026-10-30T04:20:38.080327Z 00O Running with gitlab-runner 19.6.0~pre.2364.gcc7d9535 (cc7d9535)
2026-10-30T04:20:38.080345Z 00O   on k8s.saas-linux-medium-amd64.runners-manager.gitlab.com/default j8vTLRhES, system ID: r_RRkbYsHqUnKl
2026-10-30T04:20:38.080347Z 00O   UUID: 01a01aa6-2f91-7d2c-b24d-7e2d2752ac58
2026-10-30T04:20:38.080353Z 00O   feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true, FF_USE_JOB_ROUTER:true, FF_MACHINE_OPTIONS_EXPAND_ENV:true, FF_DOCKER_MACHINE_JSON_OUTPUT:true
2026-10-30T04:20:38.080376Z 00O Resolving secrets
2026-10-30T04:20:38.080499Z 00O section_start:1793334038:prepare_executor

2026-10-30T04:20:38.080502Z 00O+Preparing the "docker+machine" executor
2026-10-30T04:20:38.152745Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-10-30T04:20:38.152783Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:38.152790Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:38.153507Z 00O Pulling docker image us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 ...
2026-10-30T04:20:40.014862Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:42.304740Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:42.304753Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:42.305785Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:42.305795Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-10-30T04:20:42.306428Z 00O Authenticating with credentials from job payload (GitLab Registry)
2026-10-30T04:20:42.306433Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc ...
2026-10-30T04:20:48.081516Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-10-30T04:20:48.081589Z 00O section_end:1793334048:prepare_executor

2026-10-30T04:20:48.081705Z 00O+section_start:1793334048:prepare_script

2026-10-30T04:20:48.081711Z 00O+Preparing environment
2026-10-30T04:20:48.081750Z 00O Using helper image:  us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535  (overridden, default would be  registry.gitlab.com/gitlab-org/gitlab-runner/gitlab-runner-helper:x86_64-v19.6.0 )
2026-10-30T04:20:48.081758Z 00O Using effective pull policy of [always] for container us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535
2026-10-30T04:20:48.082694Z 00O Using docker image sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20 for us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper:cc7d9535 with digest us-east1-docker.pkg.dev/gitlab-com-artifact-registry/containers-public/gitlab-runner-helper@sha256:594cc89134ef76aa73685eba2879d66e742c61917fb7fb0921f3f939e61d4e2d ...
2026-10-30T04:20:48.082707Z 00O Using effective pull policy of [always] for container sha256:e516a5247b58c0dc65b851e6182e8e82adb95c17e9e1c7296766587e65d20e20
2026-10-30T04:20:52.538028Z 01O Running on runner-j8vtlrhes-project-3622566-concurrent-0 via runner-j8vtlrhes-s-l-m-amd64-1793334000-a1e4ec4c...
2026-10-30T04:20:52.540660Z 01O Running on CPU: INTEL(R) XEON(R) PLATINUM 8581C CPU @ 2.10GHz (avx, avx2, avx512f)
2026-10-30T04:20:52.678541Z 00O section_end:1793334052:prepare_script

2026-10-30T04:20:52.678896Z 00O+section_start:1793334052:get_sources

2026-10-30T04:20:52.678900Z 00O+Getting source from Git repository
2026-10-30T04:20:52.981747Z 01O Gitaly correlation ID: 154a3615486746128486900e3d1dac9c
2026-10-30T04:20:52.986684Z 01O Fetching changes...
2026-10-30T04:20:52.990283Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/
2026-10-30T04:20:52.992555Z 01O Created fresh repository.
2026-10-30T04:20:58.329747Z 01O Checking out 086c6466 as detached HEAD (ref is master)...
2026-10-30T04:20:58.488806Z 01O 
2026-10-30T04:20:58.488811Z 01O Skipping Git submodules setup
2026-10-30T04:20:58.488813Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping'
2026-10-30T04:20:58.679146Z 00O section_end:1793334058:get_sources

2026-10-30T04:20:58.680835Z 00O+section_start:1793334058:download_artifacts

2026-10-30T04:20:58.680844Z 00O+Downloading artifacts
2026-10-30T04:20:58.997856Z 01O Downloading artifacts for build (17597456896)...
2026-10-30T04:20:59.222883Z 01E Direct download from storage.googleapis.com         correlation_id=ccb9775fb7b44fc5b97a9ed918c9f27c id=17597456896 status=302 token=74_nBMRbs
2026-10-30T04:20:59.557474Z 01E Downloading artifacts from coordinator... ok        correlation_id=ccb9775fb7b44fc5b97a9ed918c9f27c id=17597456896 status=302 token=74_nBMRbs
2026-10-30T04:20:59.814447Z 01O Downloading artifacts for mirror-packages (17597456894)...
2026-10-30T04:21:00.045522Z 01E Direct download from storage.googleapis.com         correlation_id=46d734839c524ee69e1a6ebc84a5c20e id=17597456894 status=302 token=74_nBMRbs
2026-10-30T04:21:00.644706Z 01E Downloading artifacts from coordinator... ok        correlation_id=46d734839c524ee69e1a6ebc84a5c20e id=17597456894 status=302 token=74_nBMRbs
2026-10-30T04:21:01.726447Z 00O section_end:1793334061:download_artifacts

2026-10-30T04:21:01.726719Z 00O+section_start:1793334061:step_script

2026-10-30T04:21:01.726726Z 00O+Executing "step_script" stage of the job script
2026-10-30T04:21:01.726737Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc
2026-10-30T04:21:01.727622Z 00O Using docker image sha256:05486d84e95d4d70547d0bb3e732294245b404c4e2624002c6f13db39f2cdd99 for registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc with digest registry.gitlab.com/rdatatable/dockerfiles/r-base-gcc@sha256:bc45a2d6cddb7e89961403726c94b09489c50ad919510a3b8d0f578ca45ec9f0 ...
2026-10-30T04:21:02.033093Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) .
2026-10-30T04:21:02.040794Z 01O $ mkdir -p ~/.R
2026-10-30T04:21:02.040801Z 01O $ echo 'CFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
2026-10-30T04:21:02.040805Z 01O $ echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
2026-10-30T04:21:02.040809Z 01O $ R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
2026-10-30T04:21:02.179575Z 01O * using log directory '/builds/Rdatatable/data.table/data.table.Rcheck'
2026-10-30T04:21:02.179580Z 01O * using R version 4.5.0 (2025-04-11)
2026-10-30T04:21:02.179679Z 01O * using platform: x86_64-pc-linux-gnu
2026-10-30T04:21:02.179753Z 01O * R was compiled by
2026-10-30T04:21:02.179753Z 01O     gcc (Debian 14.2.0-19) 14.2.0
2026-10-30T04:21:02.179754Z 01O     GNU Fortran (Debian 14.2.0-19) 14.2.0
2026-10-30T04:21:02.179919Z 01O * running under: Debian GNU/Linux 13 (trixie)
2026-10-30T04:21:02.180396Z 01O * using session charset: ASCII
2026-10-30T04:21:02.764300Z 01O * using options '--no-manual --ignore-vignettes'
2026-10-30T04:21:02.764424Z 01O * checking for file 'data.table/DESCRIPTION' ... OK
2026-10-30T04:21:02.766724Z 01O * this is package 'data.table' version '1.18.99'
2026-10-30T04:21:02.766810Z 01O * package encoding: UTF-8
2026-10-30T04:21:02.766998Z 01O * checking package namespace information ... OK
2026-10-30T04:21:02.773115Z 01O * checking package dependencies ... INFO
2026-10-30T04:21:04.067011Z 01O Packages suggested but not available for checking:
2026-10-30T04:21:04.067013Z 01O   'bit64', 'R.utils', 'xts', 'zoo', 'yaml', 'litedown'
2026-10-30T04:21:04.067015Z 01O 
2026-10-30T04:21:04.067016Z 01O Packages which this enhances but not available for checking:
2026-10-30T04:21:04.067016Z 01O   'knitr', 'xfun'
2026-10-30T04:21:04.067129Z 01O * checking if this is a source package ... OK
2026-10-30T04:21:04.068979Z 01O * checking if there is a namespace ... OK
2026-10-30T04:21:04.071828Z 01O * checking for .dll and .exe files ... OK
2026-10-30T04:21:04.072172Z 01O * checking for hidden files and directories ... OK
2026-10-30T04:21:04.073553Z 01O * checking for portable file names ... OK
2026-10-30T04:21:04.076513Z 01O * checking for sufficient/correct file permissions ... OK
2026-10-30T04:21:04.077677Z 01O * checking whether package 'data.table' can be installed ... OK
2026-10-30T04:21:15.438673Z 01O * used C compiler: 'gcc (Debian 14.2.0-19) 14.2.0'
2026-10-30T04:21:15.438681Z 01O * checking installed package size ... INFO
2026-10-30T04:21:15.442245Z 01O   installed size is  7.7Mb
2026-10-30T04:21:15.442764Z 01O   sub-directories of 1Mb or more:
2026-10-30T04:21:15.443290Z 01O     doc     1.1Mb
2026-10-30T04:21:15.443291Z 01O     libs    1.2Mb
2026-10-30T04:21:15.443291Z 01O     po      1.7Mb
2026-10-30T04:21:15.443292Z 01O     tests   2.2Mb
2026-10-30T04:21:15.443349Z 01O * checking package directory ... OK
2026-10-30T04:21:15.443617Z 01O * checking DESCRIPTION meta-information ... OK
2026-10-30T04:21:16.120807Z 01O * checking top-level files ... OK
2026-10-30T04:21:16.121319Z 01O * checking for left-over files ... OK
2026-10-30T04:21:16.122680Z 01O * checking index information ... OK
2026-10-30T04:21:16.175646Z 01O * checking package subdirectories ... OK
2026-10-30T04:21:16.278196Z 01O * checking code files for non-ASCII characters ... OK
2026-10-30T04:21:16.317699Z 01O * checking R files for syntax errors ... WARNING
2026-10-30T04:21:16.370467Z 01O Warning in Sys.setlocale("LC_CTYPE", "en_US.UTF-8") :
2026-10-30T04:21:16.370468Z 01O   OS reports request to set locale to "en_US.UTF-8" cannot be honored
2026-10-30T04:21:16.370474Z 01O * checking whether the package can be loaded ... OK
2026-10-30T04:21:16.535048Z 01O * checking whether the package can be loaded with stated dependencies ... OK
2026-10-30T04:21:16.656363Z 01O * checking whether the package can be unloaded cleanly ... OK
2026-10-30T04:21:16.791320Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK
2026-10-30T04:21:16.928949Z 01O * checking whether the namespace can be unloaded cleanly ... OK
2026-10-30T04:21:17.102008Z 01O * checking loading without being on the library search path ... OK
2026-10-30T04:21:17.450879Z 01O * checking whether startup messages can be suppressed ... OK
2026-10-30T04:21:17.615356Z 01O * checking dependencies in R code ... OK
2026-10-30T04:21:18.122873Z 01O * checking S3 generic/method consistency ... OK
2026-10-30T04:21:18.427104Z 01O * checking replacement functions ... OK
2026-10-30T04:21:18.598178Z 01O * checking foreign function calls ... OK
2026-10-30T04:21:19.196742Z 01O * checking R code for possible problems ... OK
2026-10-30T04:21:27.437381Z 01O * checking Rd files ... OK
2026-10-30T04:21:27.925036Z 01O * checking Rd metadata ... OK
2026-10-30T04:21:27.958931Z 01O * checking Rd cross-references ... INFO
2026-10-30T04:21:31.066452Z 01O Packages unavailable to check Rd xrefs: 'bit64', 'yaml'
2026-10-30T04:21:31.066458Z 01O * checking for missing documentation entries ... OK
2026-10-30T04:21:31.265012Z 01O * checking for code/documentation mismatches ... OK
2026-10-30T04:21:32.287513Z 01O * checking Rd \usage sections ... OK
2026-10-30T04:21:33.073571Z 01O * checking Rd contents ... OK
2026-10-30T04:21:33.452383Z 01O * checking for unstated dependencies in examples ... OK
2026-10-30T04:21:33.815867Z 01O * checking line endings in shell scripts ... OK
2026-10-30T04:21:33.816159Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK
2026-10-30T04:21:33.828716Z 01O * checking line endings in Makefiles ... OK
2026-10-30T04:21:33.828985Z 01O * checking compilation flags in Makevars ... OK
2026-10-30T04:21:33.872707Z 01O * checking for GNU extensions in Makefiles ... OK
2026-10-30T04:21:33.873240Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
2026-10-30T04:21:33.873997Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK
2026-10-30T04:21:33.877044Z 01O * checking compiled code ... NOTE
2026-10-30T04:21:33.933488Z 01O File 'data.table/libs/data.table.so':
2026-10-30T04:21:33.933524Z 01O   Found non-API calls to R: 'IS_GROWABLE', 'LEVELS', 'R_GetConnection',
2026-10-30T04:21:33.933525Z 01O     'R_ReadConnection', 'SETLENGTH', 'SET_GROWABLE_BIT',
2026-10-30T04:21:33.933526Z 01O     'SET_TRUELENGTH', 'TRUELENGTH', 'XTRUELENGTH'
2026-10-30T04:21:33.933865Z 01O 
2026-10-30T04:21:33.933866Z 01O Compiled code should not call non-API entry points in R.
2026-10-30T04:21:33.933867Z 01O 
2026-10-30T04:21:33.933867Z 01O See 'Writing portable packages' in the 'Writing R Extensions' manual,
2026-10-30T04:21:33.933868Z 01O and section 'Moving into C API compliance' for issues with the use of
2026-10-30T04:21:33.933868Z 01O non-API entry points.
2026-10-30T04:21:33.934172Z 01O * checking installed files from 'inst/doc' ... OK
2026-10-30T04:21:34.072835Z 01O * checking files in 'vignettes' ... SKIPPED
2026-10-30T04:21:34.073605Z 01O * checking examples ... OK
2026-10-30T04:21:37.150501Z 01O * checking for unstated dependencies in 'tests' ... OK
2026-10-30T04:21:37.202411Z 01O * checking tests ...
2026-10-30T04:21:37.314903Z 01E   Running 'S4.R'
2026-10-30T04:21:37.566554Z 01E   Running 'autoprint.R'
2026-10-30T04:21:37.772558Z 01E   Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
2026-10-30T04:21:37.777837Z 01E   Running 'froll.R'
2026-10-30T04:25:00.340377Z 01E   Running 'litedown.R'
2026-10-30T04:25:00.464768Z 01E   Running 'main.R'
2026-10-30T04:25:29.773977Z 01E   Running 'mergelist.R'
2026-10-30T04:25:31.096869Z 01E   Running 'nafill.R'
2026-10-30T04:25:31.397635Z 01E   Running 'optimize.R'
2026-10-30T04:25:34.751772Z 01E   Running 'other.R'
2026-10-30T04:25:34.924629Z 01E   Running 'programming.R'
2026-10-30T04:25:35.401806Z 01E   Running 'self.R'
2026-10-30T04:25:35.598781Z 01E   Running 'types.R'
2026-10-30T04:25:35.796124Z 01O  OK
2026-10-30T04:25:35.796473Z 01O * DONE
2026-10-30T04:25:35.796784Z 01E 
2026-10-30T04:25:35.796805Z 01O Status: 1 WARNING, 1 NOTE
2026-10-30T04:25:35.797015Z 01E See
2026-10-30T04:25:35.797016Z 01E   '/builds/Rdatatable/data.table/data.table.Rcheck/00check.log'
2026-10-30T04:25:35.797016Z 01E for details.
2026-10-30T04:25:35.797018Z 01E 
2026-10-30T04:25:36.259689Z 00O section_end:1793334336:step_script

2026-10-30T04:25:36.260007Z 00O+section_start:1793334336:after_script

2026-10-30T04:25:36.260013Z 00O+Running after_script
2026-10-30T04:25:36.519612Z 01O Running after script...
2026-10-30T04:25:36.519624Z 01O $ mkdir -p bus/$CI_JOB_NAME
2026-10-30T04:25:36.520313Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id
2026-10-30T04:25:36.520342Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status
2026-10-30T04:25:36.520361Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image
2026-10-30T04:25:36.520401Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/
2026-10-30T04:25:36.662988Z 00O section_end:1793334336:after_script

2026-10-30T04:25:36.663485Z 00O+section_start:1793334336:upload_artifacts_on_success

2026-10-30T04:25:36.663490Z 00O+Uploading artifacts for successful job
2026-10-30T04:25:36.989869Z 01O Uploading artifacts...
2026-10-30T04:25:37.038460Z 01E bus/test-lin-rel-vanilla: found 701 matching artifact files and directories 
2026-10-30T04:25:38.131204Z 01E Uploading artifacts as "archive" to coordinator... 201 Created  correlation_id=86bdfa22af8046c393900d40b0d5fcf2 id=17597456898 status=201 token=74_nBMRbs
2026-10-30T04:25:38.631549Z 00O section_end:1793334338:upload_artifacts_on_success

2026-10-30T04:25:38.631822Z 00O+section_start:1793334338:cleanup_file_variables

2026-10-30T04:25:38.631827Z 00O+Cleaning up project directory and file based variables
2026-10-30T04:25:39.069507Z 00O section_end:1793334339:cleanup_file_variables

2026-10-30T04:25:39.082776Z 00O Job succeeded