2026-07-31T04:21:48.623704Z 00O Running with gitlab-runner 19.2.0~pre.1355.g471b878c (471b878c) 2026-07-31T04:21:48.623717Z 00O  on green-4.saas-linux-medium-amd64.runners-manager.gitlab.com/default Yy-Tzs3Q7, system ID: s_57a32fe7e1c1 2026-07-31T04:21:48.623723Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true, FF_HASH_CACHE_KEYS:true 2026-07-31T04:21:48.623745Z 00O Resolving secrets 2026-07-31T04:21:48.623879Z 00O section_start:1785471708:prepare_executor  2026-07-31T04:21:48.623883Z 00O+Preparing the "docker+machine" executor 2026-07-31T04:21:48.757383Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-07-31T04:21:52.383334Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-07-31T04:21:52.383807Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-07-31T04:21:52.383817Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-07-31T04:22:03.507904Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-07-31T04:22:03.507987Z 00O section_end:1785471723:prepare_executor  2026-07-31T04:22:03.508067Z 00O+section_start:1785471723:prepare_script  2026-07-31T04:22:03.508071Z 00O+Preparing environment 2026-07-31T04:22:03.508741Z 00O Using effective pull policy of [always] for container sha256:bc39cd950806374fd502ad9b2cb3465e8b6da913cf3e9a0c1f199d1685d81f5d 2026-07-31T04:22:11.909453Z 01O Running on runner-yy-tzs3q7-project-3622566-concurrent-0 via runner-yy-tzs3q7-s-l-m-amd64-1785471264-9f68232d... 2026-07-31T04:22:12.063987Z 00O section_end:1785471732:prepare_script  2026-07-31T04:22:12.064490Z 00O+section_start:1785471732:get_sources  2026-07-31T04:22:12.064497Z 00O+Getting source from Git repository 2026-07-31T04:22:12.398220Z 01O Gitaly correlation ID: 2f2717b992d24f9fb50a268ad30ca731 2026-07-31T04:22:12.404154Z 01O Fetching changes... 2026-07-31T04:22:12.407240Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-07-31T04:22:12.409301Z 01O Created fresh repository. 2026-07-31T04:22:18.165711Z 01O Checking out 7bc8bc13 as detached HEAD (ref is master)... 2026-07-31T04:22:18.346443Z 01O 2026-07-31T04:22:18.346451Z 01O Skipping Git submodules setup 2026-07-31T04:22:18.346452Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-07-31T04:22:18.534928Z 00O section_end:1785471738:get_sources  2026-07-31T04:22:18.535664Z 00O+section_start:1785471738:download_artifacts  2026-07-31T04:22:18.535673Z 00O+Downloading artifacts 2026-07-31T04:22:18.905718Z 01O Downloading artifacts for build (15637875529)... 2026-07-31T04:22:19.114985Z 01E Direct download from storage.googleapis.com  correlation_id=0bc096fd306642adadc1d65dbfc3037b id=15637875529 status=302 token=71_sMqcPD 2026-07-31T04:22:19.318404Z 01E Downloading artifacts from coordinator... ok  correlation_id=0bc096fd306642adadc1d65dbfc3037b id=15637875529 status=302 token=71_sMqcPD 2026-07-31T04:22:19.335206Z 01O Downloading artifacts for mirror-packages (15637875528)... 2026-07-31T04:22:19.556947Z 01E Direct download from storage.googleapis.com  correlation_id=d5cbbe0666724b628b6e9896c5131070 id=15637875528 status=302 token=71_sMqcPD 2026-07-31T04:22:20.108860Z 01E Downloading artifacts from coordinator... ok  correlation_id=d5cbbe0666724b628b6e9896c5131070 id=15637875528 status=302 token=71_sMqcPD 2026-07-31T04:22:21.323393Z 00O section_end:1785471741:download_artifacts  2026-07-31T04:22:21.323789Z 00O+section_start:1785471741:step_script  2026-07-31T04:22:21.323797Z 00O+Executing "step_script" stage of the job script 2026-07-31T04:22:21.323809Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-07-31T04:22:21.324797Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-07-31T04:22:21.634480Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-07-31T04:22:21.643368Z 01O $ mkdir -p ~/.R 2026-07-31T04:22:21.644642Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-07-31T04:22:21.844127Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-07-31T04:22:21.844135Z 01E 2026-07-31T04:23:23.898102Z 01O $ echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars 2026-07-31T04:23:23.898128Z 01O $ echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars 2026-07-31T04:23:23.898129Z 01O $ echo '_R_CHECK_COMPILATION_FLAGS_KNOWN_=-Wvla' >> ~/.Renviron 2026-07-31T04:23:23.898268Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-07-31T04:23:24.059921Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-07-31T04:23:24.060075Z 01O * using R version 4.5.0 (2025-04-11) 2026-07-31T04:23:24.060318Z 01O * using platform: x86_64-pc-linux-gnu 2026-07-31T04:23:24.060541Z 01O * R was compiled by 2026-07-31T04:23:24.060709Z 01O gcc (Debian 14.2.0-19) 14.2.0 2026-07-31T04:23:24.060710Z 01O GNU Fortran (Debian 14.2.0-19) 14.2.0 2026-07-31T04:23:24.060933Z 01O * running under: Debian GNU/Linux 13 (trixie) 2026-07-31T04:23:24.061175Z 01O * using session charset: UTF-8 2026-07-31T04:23:24.763523Z 01O * using option ‘--as-cran’ 2026-07-31T04:23:24.763830Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-07-31T04:23:24.766240Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-07-31T04:23:24.766385Z 01O * package encoding: UTF-8 2026-07-31T04:23:24.766623Z 01O * checking CRAN incoming feasibility ... [13s/411s] NOTE 2026-07-31T04:30:16.043588Z 01O Maintainer: ‘Tyson Barrett ’ 2026-07-31T04:30:16.043590Z 01O 2026-07-31T04:30:16.043591Z 01O Found the following (possibly) invalid URLs: 2026-07-31T04:30:16.043591Z 01O URL: https://bugs.r-project.org/show_bug.cgi?id=17909 2026-07-31T04:30:16.043592Z 01O From: NEWS.md 2026-07-31T04:30:16.043592Z 01O Status: 418 2026-07-31T04:30:16.043593Z 01O Message: (Unused) 2026-07-31T04:30:16.043594Z 01O URL: https://mac.r-project.org/openmp (moved to https://mac.r-project.org/openmp/) 2026-07-31T04:30:16.043594Z 01O From: NEWS.md 2026-07-31T04:30:16.043595Z 01O Status: 200 2026-07-31T04:30:16.043595Z 01O Message: OK 2026-07-31T04:30:16.043596Z 01O URL: https://medium.com/basecs/getting-to-the-root-of-sorting-with-radix-sort-f8e9240d4224 2026-07-31T04:30:16.043596Z 01O From: man/setorder.Rd 2026-07-31T04:30:16.043597Z 01O Status: 403 2026-07-31T04:30:16.043597Z 01O Message: Forbidden 2026-07-31T04:30:16.043598Z 01O URL: https://stackoverflow.com/questions/11782084/reading-in-large-text-files-in-r 2026-07-31T04:30:16.043598Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043599Z 01O Status: 429 2026-07-31T04:30:16.043599Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043599Z 01O URL: https://stackoverflow.com/questions/15170741/how-does-one-do-a-full-join-using-data-table 2026-07-31T04:30:16.043600Z 01O From: inst/doc/datatable-joins.html 2026-07-31T04:30:16.043601Z 01O Status: 429 2026-07-31T04:30:16.043601Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043601Z 01O URL: https://stackoverflow.com/questions/1727772/quickly-reading-very-large-tables-as-dataframes-in-r 2026-07-31T04:30:16.043602Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043602Z 01O Status: 429 2026-07-31T04:30:16.043603Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043603Z 01O URL: https://stackoverflow.com/questions/18969420/perform-a-semi-join-with-data-table 2026-07-31T04:30:16.043604Z 01O From: inst/doc/datatable-joins.html 2026-07-31T04:30:16.043604Z 01O Status: 429 2026-07-31T04:30:16.043605Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043605Z 01O URL: https://stackoverflow.com/questions/20039335/what-is-the-purpose-of-setting-a-key-in-data-table/20057411#20057411 2026-07-31T04:30:16.043606Z 01O From: inst/doc/datatable-faq.html 2026-07-31T04:30:16.043607Z 01O Status: 429 2026-07-31T04:30:16.043607Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043607Z 01O URL: https://stackoverflow.com/questions/20345022/convert-a-data-frame-to-a-data-table-without-copy 2026-07-31T04:30:16.043608Z 01O From: man/setDT.Rd 2026-07-31T04:30:16.043608Z 01O Status: 429 2026-07-31T04:30:16.043609Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043609Z 01O URL: https://stackoverflow.com/questions/22137591/about-gforce-in-data-table-1-9-2 2026-07-31T04:30:16.043610Z 01O From: inst/doc/datatable-sd-usage.html 2026-07-31T04:30:16.043610Z 01O Status: 429 2026-07-31T04:30:16.043611Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043611Z 01O URL: https://stackoverflow.com/questions/258091/when-should-i-use-mmap-for-file-access 2026-07-31T04:30:16.043612Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043612Z 01O Status: 429 2026-07-31T04:30:16.043613Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043613Z 01O URL: https://stackoverflow.com/questions/29658627/conditional-binary-join-and-update-by-reference-using-the-data-table-package 2026-07-31T04:30:16.043614Z 01O From: inst/doc/datatable-sd-usage.html 2026-07-31T04:30:16.043615Z 01O Status: 429 2026-07-31T04:30:16.043615Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043615Z 01O URL: https://stackoverflow.com/questions/31329939/conditional-keyed-join-update-and-update-a-flag-column-for-matches 2026-07-31T04:30:16.043616Z 01O From: inst/doc/datatable-sd-usage.html 2026-07-31T04:30:16.043617Z 01O Status: 429 2026-07-31T04:30:16.043650Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043651Z 01O URL: https://stackoverflow.com/questions/35179911/shift-in-data-table-v1-9-6-is-slow-for-many-groups 2026-07-31T04:30:16.043652Z 01O From: NEWS.md 2026-07-31T04:30:16.043652Z 01O Status: 429 2026-07-31T04:30:16.043652Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043653Z 01O URL: https://stackoverflow.com/questions/36256706/fread-together-with-grepl/36270543#36270543 2026-07-31T04:30:16.043653Z 01O From: inst/doc/datatable-fread-and-fwrite.html 2026-07-31T04:30:16.043654Z 01O Status: 429 2026-07-31T04:30:16.043654Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043655Z 01O URL: https://stackoverflow.com/questions/415515/how-can-i-read-and-manipulate-csv-file-data-in-c 2026-07-31T04:30:16.043655Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043656Z 01O Status: 429 2026-07-31T04:30:16.043656Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043657Z 01O URL: https://stackoverflow.com/questions/45972/mmap-vs-reading-blocks 2026-07-31T04:30:16.043657Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043658Z 01O Status: 429 2026-07-31T04:30:16.043658Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043659Z 01O URL: https://stackoverflow.com/questions/9061736/faster-than-scan-with-rcpp 2026-07-31T04:30:16.043659Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043660Z 01O Status: 429 2026-07-31T04:30:16.043660Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043660Z 01O URL: https://stackoverflow.com/questions/9352887/strategies-for-reading-in-csv-files-in-pieces 2026-07-31T04:30:16.043661Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043661Z 01O Status: 429 2026-07-31T04:30:16.043662Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043662Z 01O URL: https://stackoverflow.com/questions/9608950/reading-huge-files-using-memory-mapped-files 2026-07-31T04:30:16.043663Z 01O From: man/fread.Rd 2026-07-31T04:30:16.043663Z 01O Status: 429 2026-07-31T04:30:16.043664Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043664Z 01O URL: https://stackoverflow.com/questions/tagged/data.table 2026-07-31T04:30:16.043665Z 01O From: README.md 2026-07-31T04:30:16.043665Z 01O Status: 429 2026-07-31T04:30:16.043666Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043666Z 01O URL: https://stackoverflow.com/questions/tagged/data.table/ 2026-07-31T04:30:16.043667Z 01O From: man/assign.Rd 2026-07-31T04:30:16.043667Z 01O Status: 429 2026-07-31T04:30:16.043667Z 01O Message: Too Many Requests 2026-07-31T04:30:16.043668Z 01O 2026-07-31T04:30:16.043668Z 01O Size of tarball: 6029803 bytes 2026-07-31T04:30:16.043857Z 01O * checking package namespace information ... OK 2026-07-31T04:30:16.051499Z 01O * checking package dependencies ... OK 2026-07-31T04:30:17.139904Z 01O * checking if this is a source package ... OK 2026-07-31T04:30:17.142915Z 01O * checking if there is a namespace ... OK 2026-07-31T04:30:17.147238Z 01O * checking for .dll and .exe files ... OK 2026-07-31T04:30:17.147799Z 01O * checking for hidden files and directories ... OK 2026-07-31T04:30:17.150740Z 01O * checking for portable file names ... OK 2026-07-31T04:30:17.155082Z 01O * checking for sufficient/correct file permissions ... OK 2026-07-31T04:30:17.159193Z 01O * checking whether package ‘data.table’ can be installed ... [40s/21s] OK 2026-07-31T04:30:37.706180Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-07-31T04:30:37.706563Z 01O * checking installed package size ... INFO 2026-07-31T04:30:37.710004Z 01O installed size is 9.1Mb 2026-07-31T04:30:37.710612Z 01O sub-directories of 1Mb or more: 2026-07-31T04:30:37.711130Z 01O doc 1.1Mb 2026-07-31T04:30:37.711130Z 01O libs 2.7Mb 2026-07-31T04:30:37.711131Z 01O po 1.7Mb 2026-07-31T04:30:37.711131Z 01O tests 2.2Mb 2026-07-31T04:30:37.723409Z 01O * checking package directory ... OK 2026-07-31T04:30:37.723852Z 01O * checking for future file timestamps ... OK 2026-07-31T04:30:37.724495Z 01O * checking ‘build’ directory ... OK 2026-07-31T04:30:37.725315Z 01O * checking DESCRIPTION meta-information ... OK 2026-07-31T04:30:38.438247Z 01O * checking top-level files ... OK 2026-07-31T04:30:39.941460Z 01O * checking for left-over files ... OK 2026-07-31T04:30:39.944244Z 01O * checking index information ... OK 2026-07-31T04:30:40.104509Z 01O * checking package subdirectories ... OK 2026-07-31T04:30:40.549203Z 01O * checking code files for non-ASCII characters ... OK 2026-07-31T04:30:40.595272Z 01O * checking R files for syntax errors ... OK 2026-07-31T04:30:40.670347Z 01O * checking whether the package can be loaded ... OK 2026-07-31T04:30:40.855238Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-07-31T04:30:41.002558Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-07-31T04:30:41.150606Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-07-31T04:30:41.311904Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-07-31T04:30:41.502006Z 01O * checking loading without being on the library search path ... OK 2026-07-31T04:30:41.883591Z 01O * checking whether startup messages can be suppressed ... OK 2026-07-31T04:30:42.068495Z 01O * checking use of S3 registration ... OK 2026-07-31T04:30:42.991089Z 01O * checking dependencies in R code ... OK 2026-07-31T04:30:43.786038Z 01O * checking S3 generic/method consistency ... OK 2026-07-31T04:30:44.112781Z 01O * checking replacement functions ... OK 2026-07-31T04:30:44.302504Z 01O * checking foreign function calls ... OK 2026-07-31T04:30:45.059599Z 01O * checking R code for possible problems ... [16s/16s] OK 2026-07-31T04:31:00.964497Z 01O * checking Rd files ... OK 2026-07-31T04:31:01.533096Z 01O * checking Rd metadata ... OK 2026-07-31T04:31:01.572943Z 01O * checking Rd line widths ... OK 2026-07-31T04:31:01.857025Z 01O * checking Rd cross-references ... OK 2026-07-31T04:31:02.386421Z 01O * checking for missing documentation entries ... OK 2026-07-31T04:31:02.602652Z 01O * checking for code/documentation mismatches ... OK 2026-07-31T04:31:03.526346Z 01O * checking Rd \usage sections ... OK 2026-07-31T04:31:04.376932Z 01O * checking Rd contents ... OK 2026-07-31T04:31:04.822592Z 01O * checking for unstated dependencies in examples ... OK 2026-07-31T04:31:05.295502Z 01O * checking line endings in shell scripts ... OK 2026-07-31T04:31:05.296153Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-07-31T04:31:05.314101Z 01O * checking line endings in Makefiles ... OK 2026-07-31T04:31:05.314581Z 01O * checking compilation flags in Makevars ... OK 2026-07-31T04:31:05.369285Z 01O * checking for GNU extensions in Makefiles ... OK 2026-07-31T04:31:05.370196Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-07-31T04:31:05.371532Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-07-31T04:31:05.375848Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2026-07-31T04:31:05.382380Z 01O * checking pragmas in C/C++ headers and code ... OK 2026-07-31T04:31:05.404278Z 01O * checking compilation flags used ... OK 2026-07-31T04:31:05.406050Z 01O * checking compiled code ... NOTE 2026-07-31T04:31:05.477798Z 01O File ‘data.table/libs/data.table.so’: 2026-07-31T04:31:05.477799Z 01O Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’, 2026-07-31T04:31:05.477800Z 01O ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, 2026-07-31T04:31:05.477801Z 01O ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’ 2026-07-31T04:31:05.478435Z 01O 2026-07-31T04:31:05.478436Z 01O Compiled code should not call non-API entry points in R. 2026-07-31T04:31:05.478437Z 01O 2026-07-31T04:31:05.478437Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, 2026-07-31T04:31:05.478438Z 01O and section ‘Moving into C API compliance’ for issues with the use of 2026-07-31T04:31:05.478438Z 01O non-API entry points. 2026-07-31T04:31:05.479530Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-07-31T04:31:05.671581Z 01O * checking files in ‘vignettes’ ... OK 2026-07-31T04:31:05.864581Z 01O * checking examples ... OK 2026-07-31T04:31:12.419474Z 01O * checking examples with --run-donttest ... OK 2026-07-31T04:31:21.053920Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-07-31T04:31:21.115994Z 01O * checking tests ... 2026-07-31T04:31:21.252181Z 01E Running ‘autoprint.R’ 2026-07-31T04:31:21.482266Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-07-31T04:31:21.488365Z 01E Running ‘froll.R’ [417s/401s] 2026-07-31T04:38:02.522249Z 01E Running ‘litedown.R’ 2026-07-31T04:38:02.804955Z 01E Running ‘main.R’ [45s/41s] 2026-07-31T04:38:43.776608Z 01E Running ‘mergelist.R’ 2026-07-31T04:38:45.236271Z 01E Running ‘nafill.R’ 2026-07-31T04:38:45.706917Z 01E Running ‘optimize.R’ 2026-07-31T04:38:46.966674Z 01E Running ‘other.R’ 2026-07-31T04:38:47.165773Z 01E Running ‘programming.R’ 2026-07-31T04:38:47.727373Z 01E Running ‘S4.R’ 2026-07-31T04:38:48.034079Z 01E Running ‘types.R’ 2026-07-31T04:38:48.282716Z 01O [468s/447s] OK 2026-07-31T04:38:48.364938Z 01O * checking for unstated dependencies in vignettes ... OK 2026-07-31T04:38:48.633725Z 01O * checking package vignettes ... OK 2026-07-31T04:38:49.316703Z 01O * checking re-building of vignette outputs ... [27s/28s] OK 2026-07-31T04:39:17.094958Z 01O * checking PDF version of manual ... OK 2026-07-31T04:39:22.698272Z 01O * checking HTML version of manual ... OK 2026-07-31T04:39:25.916896Z 01O * checking for non-standard things in the check directory ... OK 2026-07-31T04:39:25.917478Z 01O * checking for detritus in the temp directory ... OK 2026-07-31T04:39:25.918131Z 01O * DONE 2026-07-31T04:39:25.918567Z 01E 2026-07-31T04:39:25.918667Z 01O Status: 2 NOTEs 2026-07-31T04:39:25.918864Z 01E See 2026-07-31T04:39:25.918865Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-07-31T04:39:25.918866Z 01E for details. 2026-07-31T04:39:25.918957Z 01E 2026-07-31T04:39:25.954185Z 01O * installing *source* package ‘data.table’ ... 2026-07-31T04:39:25.954189Z 01O ** this is package ‘data.table’ version ‘1.18.99’ 2026-07-31T04:39:25.954190Z 01O ** using staged installation 2026-07-31T04:39:25.954190Z 01O gcc -std=gnu23 14.2.0 2026-07-31T04:39:25.954191Z 01O zlib 1.3.1 is available ok 2026-07-31T04:39:25.954191Z 01O * checking if OpenMP works with CFLAGS='' LIBS=''... yes 2026-07-31T04:39:25.954191Z 01O ** libs 2026-07-31T04:39:25.954192Z 01O using C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-07-31T04:39:25.954192Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c assign.c -o assign.o 2026-07-31T04:39:25.954194Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c between.c -o between.o 2026-07-31T04:39:25.954195Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c bmerge.c -o bmerge.o 2026-07-31T04:39:25.954195Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c chmatch.c -o chmatch.o 2026-07-31T04:39:25.954196Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c cj.c -o cj.o 2026-07-31T04:39:25.954197Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c coalesce.c -o coalesce.o 2026-07-31T04:39:25.954198Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c deleterows.c -o deleterows.o 2026-07-31T04:39:25.954199Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c dogroups.c -o dogroups.o 2026-07-31T04:39:25.954200Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fastmean.c -o fastmean.o 2026-07-31T04:39:25.954201Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fcast.c -o fcast.o 2026-07-31T04:39:25.954202Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fifelse.c -o fifelse.o 2026-07-31T04:39:25.954203Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fmelt.c -o fmelt.o 2026-07-31T04:39:25.954259Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c forder.c -o forder.o 2026-07-31T04:39:25.954260Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frank.c -o frank.o 2026-07-31T04:39:25.954261Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fread.c -o fread.o 2026-07-31T04:39:25.954262Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c freadR.c -o freadR.o 2026-07-31T04:39:25.954263Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c froll.c -o froll.o 2026-07-31T04:39:25.954264Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollR.c -o frollR.o 2026-07-31T04:39:25.954265Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frolladaptive.c -o frolladaptive.o 2026-07-31T04:39:25.954267Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollapply.c -o frollapply.o 2026-07-31T04:39:25.954268Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fsort.c -o fsort.o 2026-07-31T04:39:25.954269Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwrite.c -o fwrite.o 2026-07-31T04:39:25.954270Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwriteR.c -o fwriteR.o 2026-07-31T04:39:25.954271Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c gsumm.c -o gsumm.o 2026-07-31T04:39:25.954272Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c hash.c -o hash.o 2026-07-31T04:39:25.954273Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c idatetime.c -o idatetime.o 2026-07-31T04:39:25.954274Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c ijoin.c -o ijoin.o 2026-07-31T04:39:25.954275Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c init.c -o init.o 2026-07-31T04:39:25.954280Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c inrange.c -o inrange.o 2026-07-31T04:39:25.954281Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c mergelist.c -o mergelist.o 2026-07-31T04:39:25.954282Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nafill.c -o nafill.o 2026-07-31T04:39:25.954283Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c negate.c -o negate.o 2026-07-31T04:39:25.954284Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nqrecreateindices.c -o nqrecreateindices.o 2026-07-31T04:39:25.954285Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c openmp-utils.c -o openmp-utils.o 2026-07-31T04:39:25.954286Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c programming.c -o programming.o 2026-07-31T04:39:25.954287Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c quickselect.c -o quickselect.o 2026-07-31T04:39:25.954288Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c rbindlist.c -o rbindlist.o 2026-07-31T04:39:25.954290Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c reorder.c -o reorder.o 2026-07-31T04:39:25.954291Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shellsort.c -o shellsort.o 2026-07-31T04:39:25.954292Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shift.c -o shift.o 2026-07-31T04:39:25.954293Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c snprintf.c -o snprintf.o 2026-07-31T04:39:25.954294Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o 2026-07-31T04:39:25.954295Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c transpose.c -o transpose.o 2026-07-31T04:39:25.954296Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c types.c -o types.o 2026-07-31T04:39:25.954297Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c uniqlist.c -o uniqlist.o 2026-07-31T04:39:25.954302Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o 2026-07-31T04:39:25.954303Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c vecseq.c -o vecseq.o 2026-07-31T04:39:25.954304Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c wrappers.c -o wrappers.o 2026-07-31T04:39:25.954305Z 01O gcc -std=gnu23 -shared -L/usr/lib/R/lib -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o deleterows.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -lz -L/usr/lib/R/lib -lR 2026-07-31T04:39:25.954307Z 01O PKG_CFLAGS = -fvisibility=hidden 2026-07-31T04:39:25.954308Z 01O PKG_LIBS = -fvisibility=hidden -lz 2026-07-31T04:39:25.954308Z 01O installing to /builds/Rdatatable/data.table/data.table.Rcheck/00LOCK-data.table/00new/data.table/libs 2026-07-31T04:39:25.954309Z 01O ** R 2026-07-31T04:39:25.954310Z 01O ** inst 2026-07-31T04:39:25.954310Z 01O ** byte-compile and prepare package for lazy loading 2026-07-31T04:39:25.954310Z 01O ** help 2026-07-31T04:39:25.954311Z 01O *** installing help indices 2026-07-31T04:39:25.954311Z 01O ** building package indices 2026-07-31T04:39:25.954312Z 01O ** installing vignettes 2026-07-31T04:39:25.954312Z 01O ** testing if installed package can be loaded from temporary location 2026-07-31T04:39:25.954313Z 01O ** checking absolute paths in shared objects and dynamic libraries 2026-07-31T04:39:25.954313Z 01O ** testing if installed package can be loaded from final location 2026-07-31T04:39:25.954314Z 01O ** testing if installed package keeps a record of temporary installation path 2026-07-31T04:39:25.954314Z 01O * DONE (data.table) 2026-07-31T04:39:26.244170Z 00O section_end:1785472766:step_script  2026-07-31T04:39:26.244581Z 00O+section_start:1785472766:after_script  2026-07-31T04:39:26.244587Z 00O+Running after_script 2026-07-31T04:39:26.551436Z 01O Running after script... 2026-07-31T04:39:26.551462Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-07-31T04:39:26.552555Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-07-31T04:39:26.552622Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-07-31T04:39:26.552765Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-07-31T04:39:26.552795Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-07-31T04:39:26.704699Z 00O section_end:1785472766:after_script  2026-07-31T04:39:26.705443Z 00O+section_start:1785472766:upload_artifacts_on_success  2026-07-31T04:39:26.705451Z 00O+Uploading artifacts for successful job 2026-07-31T04:39:27.096968Z 01O Uploading artifacts... 2026-07-31T04:39:27.156115Z 01E bus/test-lin-rel: found 715 matching artifact files and directories 2026-07-31T04:39:29.455814Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=4b3211ba04b24b8dba1d122d209c4a61 id=15637875530 status=201 token=71_sMqcPD 2026-07-31T04:39:29.618886Z 00O section_end:1785472769:upload_artifacts_on_success  2026-07-31T04:39:29.619023Z 00O+section_start:1785472769:cleanup_file_variables  2026-07-31T04:39:29.619028Z 00O+Cleaning up project directory and file based variables 2026-07-31T04:39:30.074573Z 00O section_end:1785472770:cleanup_file_variables  2026-07-31T04:39:30.107930Z 00O Job succeeded