2026-05-01T04:21:38.333962Z 00O Running with gitlab-runner 18.10.0~pre.705.ge11dde90 (e11dde90) 2026-05-01T04:21:38.333971Z 00O  on blue-5.saas-linux-medium-amd64.runners-manager.gitlab.com/default nEW2M-oDE, system ID: s_fe9b8d77dc4b 2026-05-01T04:21:38.333976Z 00O  feature flags: FF_USE_GIT_PROACTIVE_AUTH:true 2026-05-01T04:21:38.333992Z 00O Resolving secrets 2026-05-01T04:21:38.334127Z 00O section_start:1777609298:prepare_executor 2026-05-01T04:21:38.334128Z 00O+Preparing the "docker+machine" executor 2026-05-01T04:21:38.461290Z 00O Using Docker executor with image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-05-01T04:21:42.420762Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-05-01T04:21:42.421276Z 00O Authenticating with credentials from job payload (GitLab Registry) 2026-05-01T04:21:42.421284Z 00O Pulling docker image registry.gitlab.com/rdatatable/dockerfiles/r-data.table ... 2026-05-01T04:21:53.856010Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-05-01T04:21:53.856087Z 00O section_end:1777609313:prepare_executor 2026-05-01T04:21:53.856088Z 00O+section_start:1777609313:prepare_script 2026-05-01T04:21:53.856182Z 00O+Preparing environment 2026-05-01T04:21:53.856852Z 00O Using effective pull policy of [always] for container sha256:aded9c720664865d61747ce8401a49ea2c05f068aa6be7c36a6bd8d43d12386e 2026-05-01T04:22:05.067139Z 01O Running on runner-new2m-ode-project-3622566-concurrent-0 via runner-new2m-ode-s-l-m-amd64-1777609235-86ca27a8... 2026-05-01T04:22:05.232675Z 00O section_end:1777609325:prepare_script 2026-05-01T04:22:05.232684Z 00O+section_start:1777609325:get_sources 2026-05-01T04:22:05.233232Z 00O+Getting source from Git repository 2026-05-01T04:22:05.594847Z 01O Gitaly correlation ID: 47215995d3184902a7314c4536dccaa1 2026-05-01T04:22:05.600771Z 01O Fetching changes... 2026-05-01T04:22:05.604049Z 01O Initialized empty Git repository in /builds/Rdatatable/data.table/.git/ 2026-05-01T04:22:05.606147Z 01O Created fresh repository. 2026-05-01T04:22:11.270424Z 01O Checking out 289a1ec3 as detached HEAD (ref is master)... 2026-05-01T04:22:11.464218Z 01O 2026-05-01T04:22:11.464223Z 01O Skipping Git submodules setup 2026-05-01T04:22:11.464224Z 01O $ git remote set-url origin "${CI_REPOSITORY_URL}" || echo 'Not a git repository; skipping' 2026-05-01T04:22:11.698273Z 00O section_end:1777609331:get_sources 2026-05-01T04:22:11.698277Z 00O+section_start:1777609331:download_artifacts 2026-05-01T04:22:11.698946Z 00O+Downloading artifacts 2026-05-01T04:22:12.111488Z 01O Downloading artifacts for build (14173257970)... 2026-05-01T04:22:12.420257Z 01E Downloading artifacts from coordinator... ok  correlation_id=829475e431da43e3ac6cd356854488cf host=storage.googleapis.com id=14173257970 responseStatus=200 OK token=6e_FMAjRv 2026-05-01T04:22:12.438142Z 01O Downloading artifacts for mirror-packages (14173257969)... 2026-05-01T04:22:13.524639Z 01E Downloading artifacts from coordinator... ok  correlation_id=1340a7af448d4af9aacc8dbb6f6c6eab host=storage.googleapis.com id=14173257969 responseStatus=200 OK token=6e_FMAjRv 2026-05-01T04:22:14.542118Z 00O section_end:1777609334:download_artifacts 2026-05-01T04:22:14.542125Z 00O+section_start:1777609334:step_script 2026-05-01T04:22:14.542527Z 00O+Executing "step_script" stage of the job script 2026-05-01T04:22:14.542544Z 00O Using effective pull policy of [always] for container registry.gitlab.com/rdatatable/dockerfiles/r-data.table 2026-05-01T04:22:14.543581Z 00O Using docker image sha256:e8c9342a86b9b495336ad2119f715a2055e8157dc4712be2cef8647d2aeea81e for registry.gitlab.com/rdatatable/dockerfiles/r-data.table with digest registry.gitlab.com/rdatatable/dockerfiles/r-data.table@sha256:52e97c94b43c2a027999ce7f1dcba88da56d3daf4283cbdc6a56408d74ce227b ... 2026-05-01T04:22:14.894776Z 01O $ cp $(ls -1t bus/build/data.table_*.tar.gz | head -n 1) . 2026-05-01T04:22:14.904764Z 01O $ mkdir -p ~/.R 2026-05-01T04:22:14.906337Z 01O $ Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="all"), repos=file.path("file:", normalizePath("bus/mirror-packages/cran", mustWork=FALSE)), quiet=TRUE)' 2026-05-01T04:22:15.126621Z 01E also installing the dependencies ‘bit’, ‘R.oo’, ‘R.methodsS3’, ‘commonmark’, ‘evaluate’, ‘highr’ 2026-05-01T04:22:15.126624Z 01E 2026-05-01T04:23:19.812225Z 01O $ echo 'CFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars 2026-05-01T04:23:19.812242Z 01O $ echo 'CXXFLAGS=-g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars 2026-05-01T04:23:19.812381Z 01O $ echo '_R_CHECK_COMPILATION_FLAGS_KNOWN_=-Wvla' >> ~/.Renviron 2026-05-01T04:23:19.812435Z 01O $ res1=0; R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1) || res1=$? # collapsed multi-line command 2026-05-01T04:23:19.978655Z 01O * using log directory ‘/builds/Rdatatable/data.table/data.table.Rcheck’ 2026-05-01T04:23:19.978824Z 01O * using R version 4.5.0 (2025-04-11) 2026-05-01T04:23:19.979054Z 01O * using platform: x86_64-pc-linux-gnu 2026-05-01T04:23:19.979278Z 01O * R was compiled by 2026-05-01T04:23:19.979440Z 01O gcc (Debian 14.2.0-19) 14.2.0 2026-05-01T04:23:19.979441Z 01O GNU Fortran (Debian 14.2.0-19) 14.2.0 2026-05-01T04:23:19.979697Z 01O * running under: Debian GNU/Linux 13 (trixie) 2026-05-01T04:23:19.979924Z 01O * using session charset: UTF-8 2026-05-01T04:23:20.700723Z 01O * using option ‘--as-cran’ 2026-05-01T04:23:20.700939Z 01O * checking for file ‘data.table/DESCRIPTION’ ... OK 2026-05-01T04:23:20.703368Z 01O * this is package ‘data.table’ version ‘1.18.99’ 2026-05-01T04:23:20.703527Z 01O * package encoding: UTF-8 2026-05-01T04:23:20.703799Z 01O * checking CRAN incoming feasibility ... [13s/371s] NOTE 2026-05-01T04:29:31.623796Z 01O Maintainer: ‘Tyson Barrett ’ 2026-05-01T04:29:31.623798Z 01O 2026-05-01T04:29:31.623799Z 01O Found the following (possibly) invalid URLs: 2026-05-01T04:29:31.623799Z 01O URL: https://bugs.r-project.org/show_bug.cgi?id=17909 2026-05-01T04:29:31.623800Z 01O From: NEWS.md 2026-05-01T04:29:31.623801Z 01O Status: 418 2026-05-01T04:29:31.623801Z 01O Message: (Unused) 2026-05-01T04:29:31.623802Z 01O URL: https://mac.r-project.org/openmp (moved to https://mac.r-project.org/openmp/) 2026-05-01T04:29:31.623802Z 01O From: NEWS.md 2026-05-01T04:29:31.623803Z 01O Status: 200 2026-05-01T04:29:31.623803Z 01O Message: OK 2026-05-01T04:29:31.623804Z 01O URL: https://medium.com/basecs/getting-to-the-root-of-sorting-with-radix-sort-f8e9240d4224 2026-05-01T04:29:31.623804Z 01O From: man/setorder.Rd 2026-05-01T04:29:31.623805Z 01O Status: 403 2026-05-01T04:29:31.623805Z 01O Message: Forbidden 2026-05-01T04:29:31.623806Z 01O URL: https://medium.datadriveninvestor.com/most-starred-and-forked-github-repos-for-r-in-data-science-fb87a54d2a6a 2026-05-01T04:29:31.623806Z 01O From: README.md 2026-05-01T04:29:31.623807Z 01O Status: 403 2026-05-01T04:29:31.623807Z 01O Message: Forbidden 2026-05-01T04:29:31.623807Z 01O URL: https://stackoverflow.com/questions/10600060/how-to-do-cross-join-in-r 2026-05-01T04:29:31.623808Z 01O From: inst/doc/datatable-joins.html 2026-05-01T04:29:31.623809Z 01O Status: 403 2026-05-01T04:29:31.623809Z 01O Message: Forbidden 2026-05-01T04:29:31.623809Z 01O URL: https://stackoverflow.com/questions/11782084/reading-in-large-text-files-in-r 2026-05-01T04:29:31.623810Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623810Z 01O Status: 403 2026-05-01T04:29:31.623811Z 01O Message: Forbidden 2026-05-01T04:29:31.623811Z 01O URL: https://stackoverflow.com/questions/15170741/how-does-one-do-a-full-join-using-data-table 2026-05-01T04:29:31.623812Z 01O From: inst/doc/datatable-joins.html 2026-05-01T04:29:31.623813Z 01O Status: 403 2026-05-01T04:29:31.623813Z 01O Message: Forbidden 2026-05-01T04:29:31.623813Z 01O URL: https://stackoverflow.com/questions/1727772/quickly-reading-very-large-tables-as-dataframes-in-r 2026-05-01T04:29:31.623814Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623815Z 01O Status: 403 2026-05-01T04:29:31.623815Z 01O Message: Forbidden 2026-05-01T04:29:31.623815Z 01O URL: https://stackoverflow.com/questions/18969420/perform-a-semi-join-with-data-table 2026-05-01T04:29:31.623816Z 01O From: inst/doc/datatable-joins.html 2026-05-01T04:29:31.623816Z 01O Status: 403 2026-05-01T04:29:31.623817Z 01O Message: Forbidden 2026-05-01T04:29:31.623817Z 01O URL: https://stackoverflow.com/questions/20039335/what-is-the-purpose-of-setting-a-key-in-data-table/20057411#20057411 2026-05-01T04:29:31.623818Z 01O From: inst/doc/datatable-faq.html 2026-05-01T04:29:31.623819Z 01O Status: 403 2026-05-01T04:29:31.623819Z 01O Message: Forbidden 2026-05-01T04:29:31.623819Z 01O URL: https://stackoverflow.com/questions/20345022/convert-a-data-frame-to-a-data-table-without-copy 2026-05-01T04:29:31.623820Z 01O From: man/setDT.Rd 2026-05-01T04:29:31.623821Z 01O Status: 403 2026-05-01T04:29:31.623821Z 01O Message: Forbidden 2026-05-01T04:29:31.623821Z 01O URL: https://stackoverflow.com/questions/22137591/about-gforce-in-data-table-1-9-2 2026-05-01T04:29:31.623822Z 01O From: inst/doc/datatable-sd-usage.html 2026-05-01T04:29:31.623823Z 01O Status: 403 2026-05-01T04:29:31.623823Z 01O Message: Forbidden 2026-05-01T04:29:31.623823Z 01O URL: https://stackoverflow.com/questions/258091/when-should-i-use-mmap-for-file-access 2026-05-01T04:29:31.623824Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623824Z 01O Status: 403 2026-05-01T04:29:31.623825Z 01O Message: Forbidden 2026-05-01T04:29:31.623825Z 01O URL: https://stackoverflow.com/questions/29658627/conditional-binary-join-and-update-by-reference-using-the-data-table-package 2026-05-01T04:29:31.623855Z 01O From: inst/doc/datatable-sd-usage.html 2026-05-01T04:29:31.623855Z 01O Status: 403 2026-05-01T04:29:31.623856Z 01O Message: Forbidden 2026-05-01T04:29:31.623856Z 01O URL: https://stackoverflow.com/questions/31329939/conditional-keyed-join-update-and-update-a-flag-column-for-matches 2026-05-01T04:29:31.623857Z 01O From: inst/doc/datatable-sd-usage.html 2026-05-01T04:29:31.623857Z 01O Status: 403 2026-05-01T04:29:31.623858Z 01O Message: Forbidden 2026-05-01T04:29:31.623858Z 01O URL: https://stackoverflow.com/questions/35179911/shift-in-data-table-v1-9-6-is-slow-for-many-groups 2026-05-01T04:29:31.623859Z 01O From: NEWS.md 2026-05-01T04:29:31.623859Z 01O Status: 403 2026-05-01T04:29:31.623860Z 01O Message: Forbidden 2026-05-01T04:29:31.623860Z 01O URL: https://stackoverflow.com/questions/36256706/fread-together-with-grepl/36270543#36270543 2026-05-01T04:29:31.623861Z 01O From: inst/doc/datatable-fread-and-fwrite.html 2026-05-01T04:29:31.623861Z 01O Status: 403 2026-05-01T04:29:31.623862Z 01O Message: Forbidden 2026-05-01T04:29:31.623862Z 01O URL: https://stackoverflow.com/questions/415515/how-can-i-read-and-manipulate-csv-file-data-in-c 2026-05-01T04:29:31.623863Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623863Z 01O Status: 403 2026-05-01T04:29:31.623864Z 01O Message: Forbidden 2026-05-01T04:29:31.623864Z 01O URL: https://stackoverflow.com/questions/45972/mmap-vs-reading-blocks 2026-05-01T04:29:31.623865Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623865Z 01O Status: 403 2026-05-01T04:29:31.623866Z 01O Message: Forbidden 2026-05-01T04:29:31.623866Z 01O URL: https://stackoverflow.com/questions/9061736/faster-than-scan-with-rcpp 2026-05-01T04:29:31.623867Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623867Z 01O Status: 403 2026-05-01T04:29:31.623867Z 01O Message: Forbidden 2026-05-01T04:29:31.623868Z 01O URL: https://stackoverflow.com/questions/9352887/strategies-for-reading-in-csv-files-in-pieces 2026-05-01T04:29:31.623868Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623869Z 01O Status: 403 2026-05-01T04:29:31.623869Z 01O Message: Forbidden 2026-05-01T04:29:31.623870Z 01O URL: https://stackoverflow.com/questions/9608950/reading-huge-files-using-memory-mapped-files 2026-05-01T04:29:31.623870Z 01O From: man/fread.Rd 2026-05-01T04:29:31.623871Z 01O Status: 403 2026-05-01T04:29:31.623871Z 01O Message: Forbidden 2026-05-01T04:29:31.623872Z 01O URL: https://stackoverflow.com/questions/tagged/data.table 2026-05-01T04:29:31.623872Z 01O From: README.md 2026-05-01T04:29:31.623873Z 01O Status: 403 2026-05-01T04:29:31.623873Z 01O Message: Forbidden 2026-05-01T04:29:31.623874Z 01O URL: https://stackoverflow.com/questions/tagged/data.table/ 2026-05-01T04:29:31.623874Z 01O From: man/assign.Rd 2026-05-01T04:29:31.623875Z 01O Status: 403 2026-05-01T04:29:31.623875Z 01O Message: Forbidden 2026-05-01T04:29:31.623875Z 01O URL: https://stat.ethz.ch/pipermail/r-devel/2010-April/057249.html 2026-05-01T04:29:31.623876Z 01O From: inst/doc/datatable-faq.html 2026-05-01T04:29:31.623876Z 01O Status: Error 2026-05-01T04:29:31.623877Z 01O Message: libcurl error code 7: 2026-05-01T04:29:31.623877Z 01O Failed to connect to stat.ethz.ch port 443 after 329 ms: Could not connect to server 2026-05-01T04:29:31.623878Z 01O 2026-05-01T04:29:31.623878Z 01O Size of tarball: 6019135 bytes 2026-05-01T04:29:31.623995Z 01O * checking package namespace information ... OK 2026-05-01T04:29:31.631544Z 01O * checking package dependencies ... OK 2026-05-01T04:29:32.747199Z 01O * checking if this is a source package ... OK 2026-05-01T04:29:32.749982Z 01O * checking if there is a namespace ... OK 2026-05-01T04:29:32.753951Z 01O * checking for .dll and .exe files ... OK 2026-05-01T04:29:32.754455Z 01O * checking for hidden files and directories ... OK 2026-05-01T04:29:32.757283Z 01O * checking for portable file names ... OK 2026-05-01T04:29:32.761514Z 01O * checking for sufficient/correct file permissions ... OK 2026-05-01T04:29:32.765497Z 01O * checking whether package ‘data.table’ can be installed ... [41s/21s] OK 2026-05-01T04:29:53.495696Z 01O * used C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-05-01T04:29:53.496083Z 01O * checking installed package size ... INFO 2026-05-01T04:29:53.499663Z 01O installed size is 9.0Mb 2026-05-01T04:29:53.500270Z 01O sub-directories of 1Mb or more: 2026-05-01T04:29:53.500803Z 01O doc 1.1Mb 2026-05-01T04:29:53.500804Z 01O libs 2.6Mb 2026-05-01T04:29:53.500804Z 01O po 1.7Mb 2026-05-01T04:29:53.500805Z 01O tests 2.2Mb 2026-05-01T04:29:53.512946Z 01O * checking package directory ... OK 2026-05-01T04:29:53.513321Z 01O * checking for future file timestamps ... OK 2026-05-01T04:29:53.513890Z 01O * checking ‘build’ directory ... OK 2026-05-01T04:29:53.514705Z 01O * checking DESCRIPTION meta-information ... OK 2026-05-01T04:29:54.198757Z 01O * checking top-level files ... OK 2026-05-01T04:29:55.671965Z 01O * checking for left-over files ... OK 2026-05-01T04:29:55.674875Z 01O * checking index information ... OK 2026-05-01T04:29:55.840735Z 01O * checking package subdirectories ... OK 2026-05-01T04:29:56.290139Z 01O * checking code files for non-ASCII characters ... OK 2026-05-01T04:29:56.338506Z 01O * checking R files for syntax errors ... OK 2026-05-01T04:29:56.415318Z 01O * checking whether the package can be loaded ... OK 2026-05-01T04:29:56.606418Z 01O * checking whether the package can be loaded with stated dependencies ... OK 2026-05-01T04:29:56.754428Z 01O * checking whether the package can be unloaded cleanly ... OK 2026-05-01T04:29:56.902546Z 01O * checking whether the namespace can be loaded with stated dependencies ... OK 2026-05-01T04:29:57.055542Z 01O * checking whether the namespace can be unloaded cleanly ... OK 2026-05-01T04:29:57.246509Z 01O * checking loading without being on the library search path ... OK 2026-05-01T04:29:57.633191Z 01O * checking whether startup messages can be suppressed ... OK 2026-05-01T04:29:57.818126Z 01O * checking use of S3 registration ... OK 2026-05-01T04:29:58.767064Z 01O * checking dependencies in R code ... OK 2026-05-01T04:29:59.565466Z 01O * checking S3 generic/method consistency ... OK 2026-05-01T04:29:59.879599Z 01O * checking replacement functions ... OK 2026-05-01T04:30:00.065938Z 01O * checking foreign function calls ... OK 2026-05-01T04:30:00.832052Z 01O * checking R code for possible problems ... [16s/16s] OK 2026-05-01T04:30:16.444803Z 01O * checking Rd files ... OK 2026-05-01T04:30:17.008574Z 01O * checking Rd metadata ... OK 2026-05-01T04:30:17.049271Z 01O * checking Rd line widths ... OK 2026-05-01T04:30:17.318104Z 01O * checking Rd cross-references ... OK 2026-05-01T04:30:17.814280Z 01O * checking for missing documentation entries ... OK 2026-05-01T04:30:18.031799Z 01O * checking for code/documentation mismatches ... OK 2026-05-01T04:30:18.965526Z 01O * checking Rd \usage sections ... OK 2026-05-01T04:30:19.810197Z 01O * checking Rd contents ... OK 2026-05-01T04:30:20.237987Z 01O * checking for unstated dependencies in examples ... OK 2026-05-01T04:30:20.705733Z 01O * checking line endings in shell scripts ... OK 2026-05-01T04:30:20.706235Z 01O * checking line endings in C/C++/Fortran sources/headers ... OK 2026-05-01T04:30:20.723567Z 01O * checking line endings in Makefiles ... OK 2026-05-01T04:30:20.724132Z 01O * checking compilation flags in Makevars ... OK 2026-05-01T04:30:20.777015Z 01O * checking for GNU extensions in Makefiles ... OK 2026-05-01T04:30:20.777906Z 01O * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2026-05-01T04:30:20.779102Z 01O * checking use of PKG_*FLAGS in Makefiles ... OK 2026-05-01T04:30:20.783152Z 01O * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2026-05-01T04:30:20.789591Z 01O * checking pragmas in C/C++ headers and code ... OK 2026-05-01T04:30:20.811429Z 01O * checking compilation flags used ... OK 2026-05-01T04:30:20.812974Z 01O * checking compiled code ... NOTE 2026-05-01T04:30:20.885015Z 01O File ‘data.table/libs/data_table.so’: 2026-05-01T04:30:20.885039Z 01O Found non-API calls to R: ‘IS_GROWABLE’, ‘LEVELS’, ‘R_GetConnection’, 2026-05-01T04:30:20.885040Z 01O ‘R_ReadConnection’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, 2026-05-01T04:30:20.885041Z 01O ‘SET_TRUELENGTH’, ‘TRUELENGTH’, ‘XTRUELENGTH’ 2026-05-01T04:30:20.885560Z 01O 2026-05-01T04:30:20.885561Z 01O Compiled code should not call non-API entry points in R. 2026-05-01T04:30:20.885562Z 01O 2026-05-01T04:30:20.885562Z 01O See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, 2026-05-01T04:30:20.885563Z 01O and section ‘Moving into C API compliance’ for issues with the use of 2026-05-01T04:30:20.885563Z 01O non-API entry points. 2026-05-01T04:30:20.886634Z 01O * checking installed files from ‘inst/doc’ ... OK 2026-05-01T04:30:21.081962Z 01O * checking files in ‘vignettes’ ... OK 2026-05-01T04:30:21.290106Z 01O * checking examples ... OK 2026-05-01T04:30:27.905946Z 01O * checking examples with --run-donttest ... OK 2026-05-01T04:30:36.590669Z 01O * checking for unstated dependencies in ‘tests’ ... OK 2026-05-01T04:30:36.658727Z 01O * checking tests ... 2026-05-01T04:30:36.806717Z 01E Running ‘autoprint.R’ 2026-05-01T04:30:37.050708Z 01E Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK 2026-05-01T04:30:37.057608Z 01E Running ‘froll.R’ [434s/416s] 2026-05-01T04:37:32.565072Z 01E Running ‘litedown.R’ 2026-05-01T04:37:32.865433Z 01E Running ‘main.R’ [45s/41s] 2026-05-01T04:38:13.656845Z 01E Running ‘mergelist.R’ 2026-05-01T04:38:15.125209Z 01E Running ‘nafill.R’ 2026-05-01T04:38:15.606079Z 01E Running ‘optimize.R’ 2026-05-01T04:38:16.933339Z 01E Running ‘other.R’ 2026-05-01T04:38:17.133861Z 01E Running ‘programming.R’ 2026-05-01T04:38:17.704747Z 01E Running ‘S4.R’ 2026-05-01T04:38:18.009713Z 01E Running ‘types.R’ 2026-05-01T04:38:18.242354Z 01O [485s/462s] OK 2026-05-01T04:38:18.323334Z 01O * checking for unstated dependencies in vignettes ... OK 2026-05-01T04:38:18.589767Z 01O * checking package vignettes ... OK 2026-05-01T04:38:19.267347Z 01O * checking re-building of vignette outputs ... [27s/28s] OK 2026-05-01T04:38:47.371962Z 01O * checking PDF version of manual ... OK 2026-05-01T04:38:53.079384Z 01O * checking HTML version of manual ... OK 2026-05-01T04:38:56.409187Z 01O * checking for non-standard things in the check directory ... OK 2026-05-01T04:38:56.409682Z 01O * checking for detritus in the temp directory ... OK 2026-05-01T04:38:56.410255Z 01O * DONE 2026-05-01T04:38:56.410557Z 01E 2026-05-01T04:38:56.410711Z 01O Status: 2 NOTEs 2026-05-01T04:38:56.410896Z 01E See 2026-05-01T04:38:56.410896Z 01E ‘/builds/Rdatatable/data.table/data.table.Rcheck/00check.log’ 2026-05-01T04:38:56.410897Z 01E for details. 2026-05-01T04:38:56.411033Z 01E 2026-05-01T04:38:56.444695Z 01O * installing *source* package ‘data.table’ ... 2026-05-01T04:38:56.444697Z 01O ** this is package ‘data.table’ version ‘1.18.99’ 2026-05-01T04:38:56.444697Z 01O ** using staged installation 2026-05-01T04:38:56.444698Z 01O gcc -std=gnu23 14.2.0 2026-05-01T04:38:56.444698Z 01O zlib 1.3.1 is available ok 2026-05-01T04:38:56.444699Z 01O * checking if OpenMP works with CFLAGS='' LIBS=''... yes 2026-05-01T04:38:56.444699Z 01O ** libs 2026-05-01T04:38:56.444700Z 01O using C compiler: ‘gcc (Debian 14.2.0-19) 14.2.0’ 2026-05-01T04:38:56.444701Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c assign.c -o assign.o 2026-05-01T04:38:56.444702Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c between.c -o between.o 2026-05-01T04:38:56.444703Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c bmerge.c -o bmerge.o 2026-05-01T04:38:56.444704Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c chmatch.c -o chmatch.o 2026-05-01T04:38:56.444704Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c cj.c -o cj.o 2026-05-01T04:38:56.444705Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c coalesce.c -o coalesce.o 2026-05-01T04:38:56.444706Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c dogroups.c -o dogroups.o 2026-05-01T04:38:56.444707Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fastmean.c -o fastmean.o 2026-05-01T04:38:56.444708Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fcast.c -o fcast.o 2026-05-01T04:38:56.444709Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fifelse.c -o fifelse.o 2026-05-01T04:38:56.444710Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fmelt.c -o fmelt.o 2026-05-01T04:38:56.444711Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c forder.c -o forder.o 2026-05-01T04:38:56.444741Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frank.c -o frank.o 2026-05-01T04:38:56.444742Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fread.c -o fread.o 2026-05-01T04:38:56.444743Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c freadR.c -o freadR.o 2026-05-01T04:38:56.444744Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c froll.c -o froll.o 2026-05-01T04:38:56.444745Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollR.c -o frollR.o 2026-05-01T04:38:56.444746Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frolladaptive.c -o frolladaptive.o 2026-05-01T04:38:56.444747Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c frollapply.c -o frollapply.o 2026-05-01T04:38:56.444747Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fsort.c -o fsort.o 2026-05-01T04:38:56.444748Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwrite.c -o fwrite.o 2026-05-01T04:38:56.444749Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c fwriteR.c -o fwriteR.o 2026-05-01T04:38:56.444750Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c gsumm.c -o gsumm.o 2026-05-01T04:38:56.444751Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c hash.c -o hash.o 2026-05-01T04:38:56.444752Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c idatetime.c -o idatetime.o 2026-05-01T04:38:56.444753Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c ijoin.c -o ijoin.o 2026-05-01T04:38:56.444754Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c init.c -o init.o 2026-05-01T04:38:56.444755Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c inrange.c -o inrange.o 2026-05-01T04:38:56.444760Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c mergelist.c -o mergelist.o 2026-05-01T04:38:56.444761Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nafill.c -o nafill.o 2026-05-01T04:38:56.444762Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c negate.c -o negate.o 2026-05-01T04:38:56.444763Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c nqrecreateindices.c -o nqrecreateindices.o 2026-05-01T04:38:56.444764Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c openmp-utils.c -o openmp-utils.o 2026-05-01T04:38:56.444765Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c programming.c -o programming.o 2026-05-01T04:38:56.444766Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c quickselect.c -o quickselect.o 2026-05-01T04:38:56.444767Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c rbindlist.c -o rbindlist.o 2026-05-01T04:38:56.444768Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c reorder.c -o reorder.o 2026-05-01T04:38:56.444769Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shellsort.c -o shellsort.o 2026-05-01T04:38:56.444770Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c shift.c -o shift.o 2026-05-01T04:38:56.444771Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c snprintf.c -o snprintf.o 2026-05-01T04:38:56.444772Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o 2026-05-01T04:38:56.444773Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c transpose.c -o transpose.o 2026-05-01T04:38:56.444774Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c types.c -o types.o 2026-05-01T04:38:56.444775Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c uniqlist.c -o uniqlist.o 2026-05-01T04:38:56.444775Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o 2026-05-01T04:38:56.444780Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c vecseq.c -o vecseq.o 2026-05-01T04:38:56.444781Z 01O gcc -std=gnu23 -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -fpic -g -O3 -flto=auto -fno-common -fopenmp -Wall -Wvla -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c wrappers.c -o wrappers.o 2026-05-01T04:38:56.444782Z 01O gcc -std=gnu23 -shared -L/usr/lib/R/lib -Wl,-z,relro -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -lz -L/usr/lib/R/lib -lR 2026-05-01T04:38:56.444784Z 01O PKG_CFLAGS = -fvisibility=hidden 2026-05-01T04:38:56.444785Z 01O PKG_LIBS = -fvisibility=hidden -lz 2026-05-01T04:38:56.444785Z 01O if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi 2026-05-01T04:38:56.444786Z 01O if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi 2026-05-01T04:38:56.444787Z 01O installing to /builds/Rdatatable/data.table/data.table.Rcheck/00LOCK-data.table/00new/data.table/libs 2026-05-01T04:38:56.444787Z 01O ** R 2026-05-01T04:38:56.444788Z 01O ** inst 2026-05-01T04:38:56.444788Z 01O ** byte-compile and prepare package for lazy loading 2026-05-01T04:38:56.444789Z 01O ** help 2026-05-01T04:38:56.444789Z 01O *** installing help indices 2026-05-01T04:38:56.444790Z 01O ** building package indices 2026-05-01T04:38:56.444790Z 01O ** installing vignettes 2026-05-01T04:38:56.444790Z 01O ** testing if installed package can be loaded from temporary location 2026-05-01T04:38:56.444791Z 01O ** checking absolute paths in shared objects and dynamic libraries 2026-05-01T04:38:56.444792Z 01O ** testing if installed package can be loaded from final location 2026-05-01T04:38:56.444792Z 01O ** testing if installed package keeps a record of temporary installation path 2026-05-01T04:38:56.444793Z 01O * DONE (data.table) 2026-05-01T04:38:56.765023Z 00O section_end:1777610336:step_script 2026-05-01T04:38:56.765029Z 00O+section_start:1777610336:after_script 2026-05-01T04:38:56.765405Z 00O+Running after_script 2026-05-01T04:38:57.094393Z 01O Running after script... 2026-05-01T04:38:57.094414Z 01O $ mkdir -p bus/$CI_JOB_NAME 2026-05-01T04:38:57.095491Z 01O $ echo $CI_JOB_ID > bus/$CI_JOB_NAME/id 2026-05-01T04:38:57.095555Z 01O $ echo $CI_JOB_STATUS > bus/$CI_JOB_NAME/status 2026-05-01T04:38:57.095657Z 01O $ echo $CI_JOB_IMAGE > bus/$CI_JOB_NAME/image 2026-05-01T04:38:57.095806Z 01O $ [ -d data.table.Rcheck ] && mv data.table.Rcheck bus/$CI_JOB_NAME/ 2026-05-01T04:38:57.254762Z 00O section_end:1777610337:after_script 2026-05-01T04:38:57.254767Z 00O+section_start:1777610337:upload_artifacts_on_success 2026-05-01T04:38:57.255485Z 00O+Uploading artifacts for successful job 2026-05-01T04:38:57.648882Z 01O Uploading artifacts... 2026-05-01T04:38:57.723304Z 01E bus/test-lin-rel: found 713 matching artifact files and directories 2026-05-01T04:39:00.098832Z 01E Uploading artifacts as "archive" to coordinator... 201 Created correlation_id=ee5e9145da63438482cf00d462f7ba1e id=14173257971 responseStatus=201 Created token=6e_FMAjRv 2026-05-01T04:39:00.282889Z 00O section_end:1777610340:upload_artifacts_on_success 2026-05-01T04:39:00.282919Z 00O+section_start:1777610340:cleanup_file_variables 2026-05-01T04:39:00.283017Z 00O+Cleaning up project directory and file based variables 2026-05-01T04:39:00.754537Z 00O section_end:1777610340:cleanup_file_variables 2026-05-01T04:39:00.754540Z 00O+ 2026-05-01T04:39:00.790546Z 00O Job succeeded